data_4P2X # _model_server_result.job_id jAUx-f2xusQpFJV7xJZ1BQ _model_server_result.datetime_utc '2024-12-26 01:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 4P2X # _exptl.entry_id 4P2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P2X _cell.length_a 75.57 _cell.length_b 75.57 _cell.length_c 133.17 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 59 A ASP 245 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A OH TYR 61 A TYR 247 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc3 A O ALA 168 A ALA 354 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 224 n n C1 C2 PEG sing 225 n n C1 H11 PEG sing 226 n n C1 H12 PEG sing 227 n n O1 HO1 PEG sing 228 n n C2 O2 PEG sing 229 n n C2 H21 PEG sing 230 n n C2 H22 PEG sing 231 n n O2 C3 PEG sing 232 n n C3 C4 PEG sing 233 n n C3 H31 PEG sing 234 n n C3 H32 PEG sing 235 n n C4 O4 PEG sing 236 n n C4 H41 PEG sing 237 n n C4 H42 PEG sing 238 n n O4 HO4 PEG sing 239 n n # _atom_sites.entry_id 4P2X _atom_sites.fract_transf_matrix[1][1] 0.013233 _atom_sites.fract_transf_matrix[1][2] 0.00764 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 1 SO4 SO4 . D 3 PEG A 1 502 2 PEG PEG . E 3 PEG A 1 503 3 PEG PEG . F 4 MG A 1 504 1 MG MG . G 3 PEG B 1 501 1 PEG PEG . H 3 PEG B 1 502 4 PEG PEG . I 5 CL B 1 503 1 CL CL . J 6 HOH A 1 601 19 HOH HOH . J 6 HOH A 2 602 13 HOH HOH . J 6 HOH A 3 603 23 HOH HOH . J 6 HOH A 4 604 44 HOH HOH . J 6 HOH A 5 605 8 HOH HOH . J 6 HOH A 6 606 27 HOH HOH . J 6 HOH A 7 607 38 HOH HOH . J 6 HOH A 8 608 26 HOH HOH . J 6 HOH A 9 609 14 HOH HOH . J 6 HOH A 10 610 34 HOH HOH . J 6 HOH A 11 611 17 HOH HOH . J 6 HOH A 12 612 51 HOH HOH . J 6 HOH A 13 613 53 HOH HOH . J 6 HOH A 14 614 25 HOH HOH . J 6 HOH A 15 615 1 HOH HOH . J 6 HOH A 16 616 2 HOH HOH . J 6 HOH A 17 617 3 HOH HOH . J 6 HOH A 18 618 6 HOH HOH . J 6 HOH A 19 619 7 HOH HOH . J 6 HOH A 20 620 15 HOH HOH . J 6 HOH A 21 621 16 HOH HOH . J 6 HOH A 22 622 24 HOH HOH . J 6 HOH A 23 623 31 HOH HOH . J 6 HOH A 24 624 35 HOH HOH . J 6 HOH A 25 625 36 HOH HOH . J 6 HOH A 26 626 37 HOH HOH . J 6 HOH A 27 627 39 HOH HOH . J 6 HOH A 28 628 41 HOH HOH . J 6 HOH A 29 629 47 HOH HOH . J 6 HOH A 30 630 48 HOH HOH . K 6 HOH B 1 601 18 HOH HOH . K 6 HOH B 2 602 40 HOH HOH . K 6 HOH B 3 603 42 HOH HOH . K 6 HOH B 4 604 43 HOH HOH . K 6 HOH B 5 605 46 HOH HOH . K 6 HOH B 6 606 4 HOH HOH . K 6 HOH B 7 607 5 HOH HOH . K 6 HOH B 8 608 9 HOH HOH . K 6 HOH B 9 609 10 HOH HOH . K 6 HOH B 10 610 11 HOH HOH . K 6 HOH B 11 611 12 HOH HOH . K 6 HOH B 12 612 20 HOH HOH . K 6 HOH B 13 613 21 HOH HOH . K 6 HOH B 14 614 22 HOH HOH . K 6 HOH B 15 615 28 HOH HOH . K 6 HOH B 16 616 29 HOH HOH . K 6 HOH B 17 617 30 HOH HOH . K 6 HOH B 18 618 32 HOH HOH . K 6 HOH B 19 619 33 HOH HOH . K 6 HOH B 20 620 45 HOH HOH . K 6 HOH B 21 621 49 HOH HOH . K 6 HOH B 22 622 50 HOH HOH . K 6 HOH B 23 623 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . G 3 77.294 11.793 13.778 1 45.97 ? C1 PEG 501 B 1 HETATM 2 O O1 PEG . . . G 3 77.733 12.96 14.48 1 42.32 ? O1 PEG 501 B 1 HETATM 3 C C2 PEG . . . G 3 75.889 12.011 13.212 1 46.12 ? C2 PEG 501 B 1 HETATM 4 O O2 PEG . . . G 3 75.56 11.131 12.127 1 50.89 ? O2 PEG 501 B 1 HETATM 5 C C3 PEG . . . G 3 76.4 11.292 10.967 1 56.17 ? C3 PEG 501 B 1 HETATM 6 C C4 PEG . . . G 3 77.431 10.158 10.884 1 57.61 ? C4 PEG 501 B 1 HETATM 7 O O4 PEG . . . G 3 78.761 10.615 10.571 1 59.86 ? O4 PEG 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #