data_4P32 # _model_server_result.job_id 9ZSj_Qp7B4pJp1xX5BelZQ _model_server_result.datetime_utc '2024-11-16 17:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4P32 # _exptl.entry_id 4P32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.16 _cell.angle_gamma 90 _cell.entry_id 4P32 _cell.length_a 191.9 _cell.length_b 36.02 _cell.length_c 64.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P32 _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 42 A THR 43 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A OE1 GLN 84 A GLN 85 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 C O1B ADP . A ADP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 D MG MG . A MG 402 1_555 G O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 D MG MG . A MG 402 1_555 G O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc7 B OG1 THR 42 B THR 43 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc8 B OE1 GLN 84 B GLN 85 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 E O2B ADP . B ADP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc10 F MG MG . B MG 402 1_555 H O HOH . B HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 F MG MG . B MG 402 1_555 H O HOH . B HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc12 F MG MG . B MG 402 1_555 H O HOH . B HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4P32 _atom_sites.fract_transf_matrix[1][1] 0.005211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000562 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 401 ADP ADP . D 3 MG A 1 402 411 MG MG . E 2 ADP B 1 401 401 ADP ADP . F 3 MG B 1 402 411 MG MG . G 4 HOH A 1 501 151 HOH HOH . G 4 HOH A 2 502 20 HOH HOH . G 4 HOH A 3 503 148 HOH HOH . G 4 HOH A 4 504 8 HOH HOH . G 4 HOH A 5 505 97 HOH HOH . G 4 HOH A 6 506 127 HOH HOH . G 4 HOH A 7 507 36 HOH HOH . G 4 HOH A 8 508 30 HOH HOH . G 4 HOH A 9 509 111 HOH HOH . G 4 HOH A 10 510 63 HOH HOH . G 4 HOH A 11 511 47 HOH HOH . G 4 HOH A 12 512 143 HOH HOH . G 4 HOH A 13 513 131 HOH HOH . G 4 HOH A 14 514 41 HOH HOH . G 4 HOH A 15 515 155 HOH HOH . G 4 HOH A 16 516 164 HOH HOH . G 4 HOH A 17 517 9 HOH HOH . G 4 HOH A 18 518 135 HOH HOH . G 4 HOH A 19 519 136 HOH HOH . G 4 HOH A 20 520 73 HOH HOH . G 4 HOH A 21 521 50 HOH HOH . G 4 HOH A 22 522 115 HOH HOH . G 4 HOH A 23 523 1 HOH HOH . G 4 HOH A 24 524 3 HOH HOH . G 4 HOH A 25 525 5 HOH HOH . G 4 HOH A 26 526 7 HOH HOH . G 4 HOH A 27 527 10 HOH HOH . G 4 HOH A 28 528 11 HOH HOH . G 4 HOH A 29 529 12 HOH HOH . G 4 HOH A 30 530 13 HOH HOH . G 4 HOH A 31 531 14 HOH HOH . G 4 HOH A 32 532 15 HOH HOH . G 4 HOH A 33 533 16 HOH HOH . G 4 HOH A 34 534 17 HOH HOH . G 4 HOH A 35 535 23 HOH HOH . G 4 HOH A 36 536 29 HOH HOH . G 4 HOH A 37 537 31 HOH HOH . G 4 HOH A 38 538 33 HOH HOH . G 4 HOH A 39 539 34 HOH HOH . G 4 HOH A 40 540 35 HOH HOH . G 4 HOH A 41 541 37 HOH HOH . G 4 HOH A 42 542 39 HOH HOH . G 4 HOH A 43 543 42 HOH HOH . G 4 HOH A 44 544 44 HOH HOH . G 4 HOH A 45 545 45 HOH HOH . G 4 HOH A 46 546 48 HOH HOH . G 4 HOH A 47 547 54 HOH HOH . G 4 HOH A 48 548 58 HOH HOH . G 4 HOH A 49 549 65 HOH HOH . G 4 HOH A 50 550 67 HOH HOH . G 4 HOH A 51 551 68 HOH HOH . G 4 HOH A 52 552 69 HOH HOH . G 4 HOH A 53 553 70 HOH HOH . G 4 HOH A 54 554 77 HOH HOH . G 4 HOH A 55 555 79 HOH HOH . G 4 HOH A 56 556 84 HOH HOH . G 4 HOH A 57 557 85 HOH HOH . G 4 HOH A 58 558 86 HOH HOH . G 4 HOH A 59 559 89 HOH HOH . G 4 HOH A 60 560 90 HOH HOH . G 4 HOH A 61 561 92 HOH HOH . G 4 HOH A 62 562 94 HOH HOH . G 4 HOH A 63 563 95 HOH HOH . G 4 HOH A 64 564 96 HOH HOH . G 4 HOH A 65 565 99 HOH HOH . G 4 HOH A 66 566 105 HOH HOH . G 4 HOH A 67 567 109 HOH HOH . G 4 HOH A 68 568 113 HOH HOH . G 4 HOH A 69 569 114 HOH HOH . G 4 HOH A 70 570 117 HOH HOH . G 4 HOH A 71 571 118 HOH HOH . G 4 HOH A 72 572 121 HOH HOH . G 4 HOH A 73 573 122 HOH HOH . G 4 HOH A 74 574 125 HOH HOH . G 4 HOH A 75 575 130 HOH HOH . G 4 HOH A 76 576 133 HOH HOH . G 4 HOH A 77 577 140 HOH HOH . G 4 HOH A 78 578 141 HOH HOH . G 4 HOH A 79 579 145 HOH HOH . G 4 HOH A 80 580 146 HOH HOH . G 4 HOH A 81 581 150 HOH HOH . G 4 HOH A 82 582 152 HOH HOH . G 4 HOH A 83 583 160 HOH HOH . G 4 HOH A 84 584 161 HOH HOH . G 4 HOH A 85 585 165 HOH HOH . G 4 HOH A 86 586 168 HOH HOH . H 4 HOH B 1 501 46 HOH HOH . H 4 HOH B 2 502 76 HOH HOH . H 4 HOH B 3 503 106 HOH HOH . H 4 HOH B 4 504 144 HOH HOH . H 4 HOH B 5 505 40 HOH HOH . H 4 HOH B 6 506 129 HOH HOH . H 4 HOH B 7 507 22 HOH HOH . H 4 HOH B 8 508 93 HOH HOH . H 4 HOH B 9 509 60 HOH HOH . H 4 HOH B 10 510 166 HOH HOH . H 4 HOH B 11 511 137 HOH HOH . H 4 HOH B 12 512 26 HOH HOH . H 4 HOH B 13 513 102 HOH HOH . H 4 HOH B 14 514 55 HOH HOH . H 4 HOH B 15 515 72 HOH HOH . H 4 HOH B 16 516 80 HOH HOH . H 4 HOH B 17 517 53 HOH HOH . H 4 HOH B 18 518 128 HOH HOH . H 4 HOH B 19 519 74 HOH HOH . H 4 HOH B 20 520 138 HOH HOH . H 4 HOH B 21 521 134 HOH HOH . H 4 HOH B 22 522 163 HOH HOH . H 4 HOH B 23 523 108 HOH HOH . H 4 HOH B 24 524 75 HOH HOH . H 4 HOH B 25 525 159 HOH HOH . H 4 HOH B 26 526 156 HOH HOH . H 4 HOH B 27 527 139 HOH HOH . H 4 HOH B 28 528 2 HOH HOH . H 4 HOH B 29 529 4 HOH HOH . H 4 HOH B 30 530 6 HOH HOH . H 4 HOH B 31 531 18 HOH HOH . H 4 HOH B 32 532 19 HOH HOH . H 4 HOH B 33 533 21 HOH HOH . H 4 HOH B 34 534 24 HOH HOH . H 4 HOH B 35 535 25 HOH HOH . H 4 HOH B 36 536 27 HOH HOH . H 4 HOH B 37 537 28 HOH HOH . H 4 HOH B 38 538 32 HOH HOH . H 4 HOH B 39 539 38 HOH HOH . H 4 HOH B 40 540 43 HOH HOH . H 4 HOH B 41 541 49 HOH HOH . H 4 HOH B 42 542 51 HOH HOH . H 4 HOH B 43 543 52 HOH HOH . H 4 HOH B 44 544 56 HOH HOH . H 4 HOH B 45 545 57 HOH HOH . H 4 HOH B 46 546 59 HOH HOH . H 4 HOH B 47 547 61 HOH HOH . H 4 HOH B 48 548 62 HOH HOH . H 4 HOH B 49 549 64 HOH HOH . H 4 HOH B 50 550 66 HOH HOH . H 4 HOH B 51 551 71 HOH HOH . H 4 HOH B 52 552 78 HOH HOH . H 4 HOH B 53 553 81 HOH HOH . H 4 HOH B 54 554 82 HOH HOH . H 4 HOH B 55 555 83 HOH HOH . H 4 HOH B 56 556 87 HOH HOH . H 4 HOH B 57 557 88 HOH HOH . H 4 HOH B 58 558 91 HOH HOH . H 4 HOH B 59 559 98 HOH HOH . H 4 HOH B 60 560 100 HOH HOH . H 4 HOH B 61 561 101 HOH HOH . H 4 HOH B 62 562 103 HOH HOH . H 4 HOH B 63 563 104 HOH HOH . H 4 HOH B 64 564 107 HOH HOH . H 4 HOH B 65 565 110 HOH HOH . H 4 HOH B 66 566 112 HOH HOH . H 4 HOH B 67 567 116 HOH HOH . H 4 HOH B 68 568 119 HOH HOH . H 4 HOH B 69 569 120 HOH HOH . H 4 HOH B 70 570 123 HOH HOH . H 4 HOH B 71 571 124 HOH HOH . H 4 HOH B 72 572 126 HOH HOH . H 4 HOH B 73 573 132 HOH HOH . H 4 HOH B 74 574 142 HOH HOH . H 4 HOH B 75 575 147 HOH HOH . H 4 HOH B 76 576 149 HOH HOH . H 4 HOH B 77 577 153 HOH HOH . H 4 HOH B 78 578 154 HOH HOH . H 4 HOH B 79 579 157 HOH HOH . H 4 HOH B 80 580 158 HOH HOH . H 4 HOH B 81 581 162 HOH HOH . H 4 HOH B 82 582 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 55.772 37.822 15.097 1 20.29 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . C 2 56.652 36.803 15.806 1 20.17 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . C 2 56.42 39.178 14.967 1 21.11 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . C 2 55.193 37.271 13.821 1 21.46 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . C 2 54.252 37.477 17.557 1 21.59 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . C 2 55.471 37.684 18.428 1 22.75 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . C 2 53.608 36.129 17.484 1 18.49 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . C 2 54.512 38.065 16.079 1 21.5 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . C 2 53.124 38.482 18.118 1 23.86 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . C 2 51.86 38.512 17.462 1 25.25 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . C 2 51.013 39.559 18.164 1 26.19 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . C 2 50.669 39.059 19.454 1 27.53 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . C 2 51.788 40.849 18.368 1 33.49 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . C 2 51.03 41.938 17.836 1 39.1 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . C 2 51.912 41.008 19.871 1 34.39 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . C 2 51.664 42.354 20.277 1 39.89 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . C 2 50.846 40.082 20.424 1 28.32 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . C 2 51.269 39.471 21.698 1 30.83 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . C 2 52.282 38.594 21.869 1 32.17 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . C 2 52.388 38.228 23.171 1 31.41 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . C 2 51.427 38.885 23.852 1 31.52 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . C 2 50.982 38.96 25.26 1 32.65 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . C 2 51.601 38.241 26.226 1 35.67 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . C 2 49.937 39.769 25.546 1 33.42 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . C 2 49.313 40.488 24.594 1 33.88 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . C 2 49.66 40.468 23.295 1 32.9 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . C 2 50.695 39.701 22.876 1 32.15 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #