data_4P33 # _model_server_result.job_id okKPIoEtYpiNKlUeHXgwjQ _model_server_result.datetime_utc '2024-11-26 01:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4P33 # _exptl.entry_id 4P33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P33 _cell.length_a 66.62 _cell.length_b 138.36 _cell.length_c 101.28 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P33 _symmetry.cell_setting . _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1,2 B,H,I,J,K,M 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 50.64 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 42 A THR 43 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A OE1 GLN 84 A GLN 85 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 C NA NA . A NA 401 1_555 D O1G ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 C NA NA . A NA 401 1_555 D O1B ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 C NA NA . A NA 401 1_555 L O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc6 C NA NA . A NA 401 1_555 L O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc7 B OG1 THR 42 B THR 43 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc8 B OE1 GLN 84 B GLN 85 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 H NA NA . B NA 401 1_555 I O3G ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc10 H NA NA . B NA 401 1_555 I O2B ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc11 H NA NA . B NA 401 1_555 M O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 H NA NA . B NA 401 1_555 M O HOH . B HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4P33 _atom_sites.fract_transf_matrix[1][1] 0.015011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 401 NA NA . D 3 ATP A 1 402 501 ATP ATP . E 4 GOL A 1 403 1 GOL GOL . F 4 GOL A 1 404 4 GOL GOL . G 4 GOL A 1 405 5 GOL GOL . H 2 NA B 1 401 401 NA NA . I 3 ATP B 1 402 501 ATP ATP . J 4 GOL B 1 403 2 GOL GOL . K 4 GOL B 1 404 3 GOL GOL . L 5 HOH A 1 501 55 HOH HOH . L 5 HOH A 2 502 137 HOH HOH . L 5 HOH A 3 503 61 HOH HOH . L 5 HOH A 4 504 51 HOH HOH . L 5 HOH A 5 505 77 HOH HOH . L 5 HOH A 6 506 141 HOH HOH . L 5 HOH A 7 507 57 HOH HOH . L 5 HOH A 8 508 71 HOH HOH . L 5 HOH A 9 509 8 HOH HOH . L 5 HOH A 10 510 104 HOH HOH . L 5 HOH A 11 511 42 HOH HOH . L 5 HOH A 12 512 65 HOH HOH . L 5 HOH A 13 513 25 HOH HOH . L 5 HOH A 14 514 41 HOH HOH . L 5 HOH A 15 515 43 HOH HOH . L 5 HOH A 16 516 90 HOH HOH . L 5 HOH A 17 517 72 HOH HOH . L 5 HOH A 18 518 75 HOH HOH . L 5 HOH A 19 519 44 HOH HOH . L 5 HOH A 20 520 123 HOH HOH . L 5 HOH A 21 521 35 HOH HOH . L 5 HOH A 22 522 56 HOH HOH . L 5 HOH A 23 523 114 HOH HOH . L 5 HOH A 24 524 12 HOH HOH . L 5 HOH A 25 525 120 HOH HOH . L 5 HOH A 26 526 81 HOH HOH . L 5 HOH A 27 527 1 HOH HOH . L 5 HOH A 28 528 4 HOH HOH . L 5 HOH A 29 529 17 HOH HOH . L 5 HOH A 30 530 27 HOH HOH . L 5 HOH A 31 531 32 HOH HOH . L 5 HOH A 32 532 33 HOH HOH . L 5 HOH A 33 533 36 HOH HOH . L 5 HOH A 34 534 37 HOH HOH . L 5 HOH A 35 535 39 HOH HOH . L 5 HOH A 36 536 40 HOH HOH . L 5 HOH A 37 537 47 HOH HOH . L 5 HOH A 38 538 52 HOH HOH . L 5 HOH A 39 539 54 HOH HOH . L 5 HOH A 40 540 58 HOH HOH . L 5 HOH A 41 541 59 HOH HOH . L 5 HOH A 42 542 60 HOH HOH . L 5 HOH A 43 543 63 HOH HOH . L 5 HOH A 44 544 76 HOH HOH . L 5 HOH A 45 545 83 HOH HOH . L 5 HOH A 46 546 84 HOH HOH . L 5 HOH A 47 547 88 HOH HOH . L 5 HOH A 48 548 89 HOH HOH . L 5 HOH A 49 549 94 HOH HOH . L 5 HOH A 50 550 106 HOH HOH . L 5 HOH A 51 551 110 HOH HOH . L 5 HOH A 52 552 111 HOH HOH . L 5 HOH A 53 553 112 HOH HOH . L 5 HOH A 54 554 113 HOH HOH . L 5 HOH A 55 555 116 HOH HOH . L 5 HOH A 56 556 125 HOH HOH . L 5 HOH A 57 557 127 HOH HOH . L 5 HOH A 58 558 129 HOH HOH . L 5 HOH A 59 559 133 HOH HOH . L 5 HOH A 60 560 134 HOH HOH . L 5 HOH A 61 561 135 HOH HOH . L 5 HOH A 62 562 136 HOH HOH . L 5 HOH A 63 563 140 HOH HOH . L 5 HOH A 64 564 142 HOH HOH . L 5 HOH A 65 565 145 HOH HOH . L 5 HOH A 66 566 148 HOH HOH . L 5 HOH A 67 567 149 HOH HOH . M 5 HOH B 1 501 144 HOH HOH . M 5 HOH B 2 502 78 HOH HOH . M 5 HOH B 3 503 6 HOH HOH . M 5 HOH B 4 504 82 HOH HOH . M 5 HOH B 5 505 101 HOH HOH . M 5 HOH B 6 506 130 HOH HOH . M 5 HOH B 7 507 70 HOH HOH . M 5 HOH B 8 508 131 HOH HOH . M 5 HOH B 9 509 45 HOH HOH . M 5 HOH B 10 510 15 HOH HOH . M 5 HOH B 11 511 7 HOH HOH . M 5 HOH B 12 512 48 HOH HOH . M 5 HOH B 13 513 73 HOH HOH . M 5 HOH B 14 514 2 HOH HOH . M 5 HOH B 15 515 49 HOH HOH . M 5 HOH B 16 516 87 HOH HOH . M 5 HOH B 17 517 91 HOH HOH . M 5 HOH B 18 518 46 HOH HOH . M 5 HOH B 19 519 30 HOH HOH . M 5 HOH B 20 520 26 HOH HOH . M 5 HOH B 21 521 24 HOH HOH . M 5 HOH B 22 522 97 HOH HOH . M 5 HOH B 23 523 22 HOH HOH . M 5 HOH B 24 524 79 HOH HOH . M 5 HOH B 25 525 100 HOH HOH . M 5 HOH B 26 526 115 HOH HOH . M 5 HOH B 27 527 69 HOH HOH . M 5 HOH B 28 528 66 HOH HOH . M 5 HOH B 29 529 62 HOH HOH . M 5 HOH B 30 530 34 HOH HOH . M 5 HOH B 31 531 53 HOH HOH . M 5 HOH B 32 532 139 HOH HOH . M 5 HOH B 33 533 20 HOH HOH . M 5 HOH B 34 534 93 HOH HOH . M 5 HOH B 35 535 143 HOH HOH . M 5 HOH B 36 536 50 HOH HOH . M 5 HOH B 37 537 126 HOH HOH . M 5 HOH B 38 538 68 HOH HOH . M 5 HOH B 39 539 105 HOH HOH . M 5 HOH B 40 540 64 HOH HOH . M 5 HOH B 41 541 107 HOH HOH . M 5 HOH B 42 542 147 HOH HOH . M 5 HOH B 43 543 98 HOH HOH . M 5 HOH B 44 544 122 HOH HOH . M 5 HOH B 45 545 3 HOH HOH . M 5 HOH B 46 546 5 HOH HOH . M 5 HOH B 47 547 9 HOH HOH . M 5 HOH B 48 548 10 HOH HOH . M 5 HOH B 49 549 11 HOH HOH . M 5 HOH B 50 550 13 HOH HOH . M 5 HOH B 51 551 14 HOH HOH . M 5 HOH B 52 552 16 HOH HOH . M 5 HOH B 53 553 18 HOH HOH . M 5 HOH B 54 554 19 HOH HOH . M 5 HOH B 55 555 21 HOH HOH . M 5 HOH B 56 556 23 HOH HOH . M 5 HOH B 57 557 28 HOH HOH . M 5 HOH B 58 558 29 HOH HOH . M 5 HOH B 59 559 31 HOH HOH . M 5 HOH B 60 560 38 HOH HOH . M 5 HOH B 61 561 67 HOH HOH . M 5 HOH B 62 562 74 HOH HOH . M 5 HOH B 63 563 80 HOH HOH . M 5 HOH B 64 564 85 HOH HOH . M 5 HOH B 65 565 86 HOH HOH . M 5 HOH B 66 566 92 HOH HOH . M 5 HOH B 67 567 95 HOH HOH . M 5 HOH B 68 568 96 HOH HOH . M 5 HOH B 69 569 99 HOH HOH . M 5 HOH B 70 570 102 HOH HOH . M 5 HOH B 71 571 103 HOH HOH . M 5 HOH B 72 572 108 HOH HOH . M 5 HOH B 73 573 109 HOH HOH . M 5 HOH B 74 574 117 HOH HOH . M 5 HOH B 75 575 118 HOH HOH . M 5 HOH B 76 576 119 HOH HOH . M 5 HOH B 77 577 121 HOH HOH . M 5 HOH B 78 578 124 HOH HOH . M 5 HOH B 79 579 128 HOH HOH . M 5 HOH B 80 580 132 HOH HOH . M 5 HOH B 81 581 138 HOH HOH . M 5 HOH B 82 582 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 0.288 -40.16 35.802 1 13.6 ? PG ATP 402 A 1 HETATM 2 O O1G ATP . . . D 3 1.062 -39.305 34.83 1 13.6 ? O1G ATP 402 A 1 HETATM 3 O O2G ATP . . . D 3 -1.201 -39.926 35.817 1 13.17 ? O2G ATP 402 A 1 HETATM 4 O O3G ATP . . . D 3 0.649 -41.635 35.734 1 16.56 ? O3G ATP 402 A 1 HETATM 5 P PB ATP . . . D 3 2.17 -39.508 37.984 1 14.27 ? PB ATP 402 A 1 HETATM 6 O O1B ATP . . . D 3 3.218 -38.983 37.045 1 13.97 ? O1B ATP 402 A 1 HETATM 7 O O2B ATP . . . D 3 2.466 -40.735 38.82 1 16.58 ? O2B ATP 402 A 1 HETATM 8 O O3B ATP . . . D 3 0.733 -39.728 37.297 1 12.84 ? O3B ATP 402 A 1 HETATM 9 P PA ATP . . . D 3 2.338 -36.883 39.224 1 14.99 ? PA ATP 402 A 1 HETATM 10 O O1A ATP . . . D 3 2.219 -36.096 37.941 1 16.05 ? O1A ATP 402 A 1 HETATM 11 O O2A ATP . . . D 3 3.659 -36.965 39.924 1 16.36 ? O2A ATP 402 A 1 HETATM 12 O O3A ATP . . . D 3 1.742 -38.366 39.041 1 14.73 ? O3A ATP 402 A 1 HETATM 13 O O5' ATP . . . D 3 1.22 -36.307 40.232 1 16.85 ? O5' ATP 402 A 1 HETATM 14 C C5' ATP . . . D 3 1.144 -36.783 41.573 1 16.8 ? C5' ATP 402 A 1 HETATM 15 C C4' ATP . . . D 3 -0.041 -36.105 42.248 1 15.46 ? C4' ATP 402 A 1 HETATM 16 O O4' ATP . . . D 3 0.299 -34.749 42.505 1 17.36 ? O4' ATP 402 A 1 HETATM 17 C C3' ATP . . . D 3 -1.28 -36.105 41.372 1 17.23 ? C3' ATP 402 A 1 HETATM 18 O O3' ATP . . . D 3 -2.364 -36.641 42.136 1 16.69 ? O3' ATP 402 A 1 HETATM 19 C C2' ATP . . . D 3 -1.542 -34.647 41.038 1 18.36 ? C2' ATP 402 A 1 HETATM 20 O O2' ATP . . . D 3 -2.933 -34.316 41.093 1 18.72 ? O2' ATP 402 A 1 HETATM 21 C C1' ATP . . . D 3 -0.771 -33.892 42.106 1 16.47 ? C1' ATP 402 A 1 HETATM 22 N N9 ATP . . . D 3 -0.153 -32.65 41.619 1 16.58 ? N9 ATP 402 A 1 HETATM 23 C C8 ATP . . . D 3 0.765 -32.544 40.637 1 18.09 ? C8 ATP 402 A 1 HETATM 24 N N7 ATP . . . D 3 1.134 -31.253 40.467 1 18.96 ? N7 ATP 402 A 1 HETATM 25 C C5 ATP . . . D 3 0.454 -30.516 41.366 1 20.09 ? C5 ATP 402 A 1 HETATM 26 C C6 ATP . . . D 3 0.366 -29.085 41.724 1 21.16 ? C6 ATP 402 A 1 HETATM 27 N N6 ATP . . . D 3 1.109 -28.159 41.077 1 24.13 ? N6 ATP 402 A 1 HETATM 28 N N1 ATP . . . D 3 -0.478 -28.747 42.724 1 20.22 ? N1 ATP 402 A 1 HETATM 29 C C2 ATP . . . D 3 -1.219 -29.656 43.38 1 20.51 ? C2 ATP 402 A 1 HETATM 30 N N3 ATP . . . D 3 -1.196 -30.974 43.104 1 19.68 ? N3 ATP 402 A 1 HETATM 31 C C4 ATP . . . D 3 -0.392 -31.442 42.123 1 18.37 ? C4 ATP 402 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #