data_4P33
#
_model_server_result.job_id            lR7GaHB2YtJ7YX_Fo8vusg 
_model_server_result.datetime_utc      '2024-11-26 01:37:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    4P33 
#
_exptl.entry_id    4P33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P33 
_cell.length_a            66.62 
_cell.length_b            138.36 
_cell.length_c            101.28 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P33 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1,2 
B,H,I,J,K,M 2 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 50.64 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 42 A THR 43 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 A OE1 GLN 84 A GLN 85 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc3 C NA NA . A NA 401 1_555 D O1G ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 C NA NA . A NA 401 1_555 D O1B ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc5 C NA NA . A NA 401 1_555 L O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc6 C NA NA . A NA 401 1_555 L O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc7 B OG1 THR 42 B THR 43 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc8 B OE1 GLN 84 B GLN 85 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc9 H NA NA . B NA 401 1_555 I O3G ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc10 H NA NA . B NA 401 1_555 I O2B ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc11 H NA NA . B NA 401 1_555 M O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc12 H NA NA . B NA 401 1_555 M O HOH . B HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     4P33 
_atom_sites.fract_transf_matrix[1][1]    0.015011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007228 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 401 401 NA NA . 
D 3 ATP A 1 402 501 ATP ATP . 
E 4 GOL A 1 403 1 GOL GOL . 
F 4 GOL A 1 404 4 GOL GOL . 
G 4 GOL A 1 405 5 GOL GOL . 
H 2 NA B 1 401 401 NA NA . 
I 3 ATP B 1 402 501 ATP ATP . 
J 4 GOL B 1 403 2 GOL GOL . 
K 4 GOL B 1 404 3 GOL GOL . 
L 5 HOH A 1 501 55 HOH HOH . 
L 5 HOH A 2 502 137 HOH HOH . 
L 5 HOH A 3 503 61 HOH HOH . 
L 5 HOH A 4 504 51 HOH HOH . 
L 5 HOH A 5 505 77 HOH HOH . 
L 5 HOH A 6 506 141 HOH HOH . 
L 5 HOH A 7 507 57 HOH HOH . 
L 5 HOH A 8 508 71 HOH HOH . 
L 5 HOH A 9 509 8 HOH HOH . 
L 5 HOH A 10 510 104 HOH HOH . 
L 5 HOH A 11 511 42 HOH HOH . 
L 5 HOH A 12 512 65 HOH HOH . 
L 5 HOH A 13 513 25 HOH HOH . 
L 5 HOH A 14 514 41 HOH HOH . 
L 5 HOH A 15 515 43 HOH HOH . 
L 5 HOH A 16 516 90 HOH HOH . 
L 5 HOH A 17 517 72 HOH HOH . 
L 5 HOH A 18 518 75 HOH HOH . 
L 5 HOH A 19 519 44 HOH HOH . 
L 5 HOH A 20 520 123 HOH HOH . 
L 5 HOH A 21 521 35 HOH HOH . 
L 5 HOH A 22 522 56 HOH HOH . 
L 5 HOH A 23 523 114 HOH HOH . 
L 5 HOH A 24 524 12 HOH HOH . 
L 5 HOH A 25 525 120 HOH HOH . 
L 5 HOH A 26 526 81 HOH HOH . 
L 5 HOH A 27 527 1 HOH HOH . 
L 5 HOH A 28 528 4 HOH HOH . 
L 5 HOH A 29 529 17 HOH HOH . 
L 5 HOH A 30 530 27 HOH HOH . 
L 5 HOH A 31 531 32 HOH HOH . 
L 5 HOH A 32 532 33 HOH HOH . 
L 5 HOH A 33 533 36 HOH HOH . 
L 5 HOH A 34 534 37 HOH HOH . 
L 5 HOH A 35 535 39 HOH HOH . 
L 5 HOH A 36 536 40 HOH HOH . 
L 5 HOH A 37 537 47 HOH HOH . 
L 5 HOH A 38 538 52 HOH HOH . 
L 5 HOH A 39 539 54 HOH HOH . 
L 5 HOH A 40 540 58 HOH HOH . 
L 5 HOH A 41 541 59 HOH HOH . 
L 5 HOH A 42 542 60 HOH HOH . 
L 5 HOH A 43 543 63 HOH HOH . 
L 5 HOH A 44 544 76 HOH HOH . 
L 5 HOH A 45 545 83 HOH HOH . 
L 5 HOH A 46 546 84 HOH HOH . 
L 5 HOH A 47 547 88 HOH HOH . 
L 5 HOH A 48 548 89 HOH HOH . 
L 5 HOH A 49 549 94 HOH HOH . 
L 5 HOH A 50 550 106 HOH HOH . 
L 5 HOH A 51 551 110 HOH HOH . 
L 5 HOH A 52 552 111 HOH HOH . 
L 5 HOH A 53 553 112 HOH HOH . 
L 5 HOH A 54 554 113 HOH HOH . 
L 5 HOH A 55 555 116 HOH HOH . 
L 5 HOH A 56 556 125 HOH HOH . 
L 5 HOH A 57 557 127 HOH HOH . 
L 5 HOH A 58 558 129 HOH HOH . 
L 5 HOH A 59 559 133 HOH HOH . 
L 5 HOH A 60 560 134 HOH HOH . 
L 5 HOH A 61 561 135 HOH HOH . 
L 5 HOH A 62 562 136 HOH HOH . 
L 5 HOH A 63 563 140 HOH HOH . 
L 5 HOH A 64 564 142 HOH HOH . 
L 5 HOH A 65 565 145 HOH HOH . 
L 5 HOH A 66 566 148 HOH HOH . 
L 5 HOH A 67 567 149 HOH HOH . 
M 5 HOH B 1 501 144 HOH HOH . 
M 5 HOH B 2 502 78 HOH HOH . 
M 5 HOH B 3 503 6 HOH HOH . 
M 5 HOH B 4 504 82 HOH HOH . 
M 5 HOH B 5 505 101 HOH HOH . 
M 5 HOH B 6 506 130 HOH HOH . 
M 5 HOH B 7 507 70 HOH HOH . 
M 5 HOH B 8 508 131 HOH HOH . 
M 5 HOH B 9 509 45 HOH HOH . 
M 5 HOH B 10 510 15 HOH HOH . 
M 5 HOH B 11 511 7 HOH HOH . 
M 5 HOH B 12 512 48 HOH HOH . 
M 5 HOH B 13 513 73 HOH HOH . 
M 5 HOH B 14 514 2 HOH HOH . 
M 5 HOH B 15 515 49 HOH HOH . 
M 5 HOH B 16 516 87 HOH HOH . 
M 5 HOH B 17 517 91 HOH HOH . 
M 5 HOH B 18 518 46 HOH HOH . 
M 5 HOH B 19 519 30 HOH HOH . 
M 5 HOH B 20 520 26 HOH HOH . 
M 5 HOH B 21 521 24 HOH HOH . 
M 5 HOH B 22 522 97 HOH HOH . 
M 5 HOH B 23 523 22 HOH HOH . 
M 5 HOH B 24 524 79 HOH HOH . 
M 5 HOH B 25 525 100 HOH HOH . 
M 5 HOH B 26 526 115 HOH HOH . 
M 5 HOH B 27 527 69 HOH HOH . 
M 5 HOH B 28 528 66 HOH HOH . 
M 5 HOH B 29 529 62 HOH HOH . 
M 5 HOH B 30 530 34 HOH HOH . 
M 5 HOH B 31 531 53 HOH HOH . 
M 5 HOH B 32 532 139 HOH HOH . 
M 5 HOH B 33 533 20 HOH HOH . 
M 5 HOH B 34 534 93 HOH HOH . 
M 5 HOH B 35 535 143 HOH HOH . 
M 5 HOH B 36 536 50 HOH HOH . 
M 5 HOH B 37 537 126 HOH HOH . 
M 5 HOH B 38 538 68 HOH HOH . 
M 5 HOH B 39 539 105 HOH HOH . 
M 5 HOH B 40 540 64 HOH HOH . 
M 5 HOH B 41 541 107 HOH HOH . 
M 5 HOH B 42 542 147 HOH HOH . 
M 5 HOH B 43 543 98 HOH HOH . 
M 5 HOH B 44 544 122 HOH HOH . 
M 5 HOH B 45 545 3 HOH HOH . 
M 5 HOH B 46 546 5 HOH HOH . 
M 5 HOH B 47 547 9 HOH HOH . 
M 5 HOH B 48 548 10 HOH HOH . 
M 5 HOH B 49 549 11 HOH HOH . 
M 5 HOH B 50 550 13 HOH HOH . 
M 5 HOH B 51 551 14 HOH HOH . 
M 5 HOH B 52 552 16 HOH HOH . 
M 5 HOH B 53 553 18 HOH HOH . 
M 5 HOH B 54 554 19 HOH HOH . 
M 5 HOH B 55 555 21 HOH HOH . 
M 5 HOH B 56 556 23 HOH HOH . 
M 5 HOH B 57 557 28 HOH HOH . 
M 5 HOH B 58 558 29 HOH HOH . 
M 5 HOH B 59 559 31 HOH HOH . 
M 5 HOH B 60 560 38 HOH HOH . 
M 5 HOH B 61 561 67 HOH HOH . 
M 5 HOH B 62 562 74 HOH HOH . 
M 5 HOH B 63 563 80 HOH HOH . 
M 5 HOH B 64 564 85 HOH HOH . 
M 5 HOH B 65 565 86 HOH HOH . 
M 5 HOH B 66 566 92 HOH HOH . 
M 5 HOH B 67 567 95 HOH HOH . 
M 5 HOH B 68 568 96 HOH HOH . 
M 5 HOH B 69 569 99 HOH HOH . 
M 5 HOH B 70 570 102 HOH HOH . 
M 5 HOH B 71 571 103 HOH HOH . 
M 5 HOH B 72 572 108 HOH HOH . 
M 5 HOH B 73 573 109 HOH HOH . 
M 5 HOH B 74 574 117 HOH HOH . 
M 5 HOH B 75 575 118 HOH HOH . 
M 5 HOH B 76 576 119 HOH HOH . 
M 5 HOH B 77 577 121 HOH HOH . 
M 5 HOH B 78 578 124 HOH HOH . 
M 5 HOH B 79 579 128 HOH HOH . 
M 5 HOH B 80 580 132 HOH HOH . 
M 5 HOH B 81 581 138 HOH HOH . 
M 5 HOH B 82 582 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 2.238 -13.891 13.358 0.9 18.58 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 4 1.172 -13.349 12.622 0.9 18.63 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 4 2.155 -15.414 13.283 0.9 18.24 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 4 2.323 -15.839 11.942 0.9 19.78 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 4 0.805 -15.897 13.799 0.9 19.13 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 4 0.821 -17.312 13.862 0.9 19.38 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#