data_4P38 # _model_server_result.job_id LOc-pFVscaKhSQnaLKyt-A _model_server_result.datetime_utc '2024-12-10 20:36:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4P38 # _exptl.entry_id 4P38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P38 _cell.length_a 103.516 _cell.length_b 103.516 _cell.length_c 134.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 44.926667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 303 n n PA O2A NDP sing 304 n n PA O5B NDP sing 305 n n PA O3 NDP sing 306 n n O2A HOA2 NDP sing 307 n n O5B C5B NDP sing 308 n n C5B C4B NDP sing 309 n n C5B H51A NDP sing 310 n n C5B H52A NDP sing 311 n n C4B O4B NDP sing 312 n n C4B C3B NDP sing 313 n n C4B H4B NDP sing 314 n n O4B C1B NDP sing 315 n n C3B O3B NDP sing 316 n n C3B C2B NDP sing 317 n n C3B H3B NDP sing 318 n n O3B HO3A NDP sing 319 n n C2B O2B NDP sing 320 n n C2B C1B NDP sing 321 n n C2B H2B NDP sing 322 n n O2B P2B NDP sing 323 n n C1B N9A NDP sing 324 n n C1B H1B NDP sing 325 n n N9A C8A NDP sing 326 n y N9A C4A NDP sing 327 n y C8A N7A NDP doub 328 n y C8A H8A NDP sing 329 n n N7A C5A NDP sing 330 n y C5A C6A NDP sing 331 n y C5A C4A NDP doub 332 n y C6A N6A NDP sing 333 n n C6A N1A NDP doub 334 n y N6A H61A NDP sing 335 n n N6A H62A NDP sing 336 n n N1A C2A NDP sing 337 n y C2A N3A NDP doub 338 n y C2A H2A NDP sing 339 n n N3A C4A NDP sing 340 n y O3 PN NDP sing 341 n n PN O1N NDP doub 342 n n PN O2N NDP sing 343 n n PN O5D NDP sing 344 n n O2N H21N NDP sing 345 n n O5D C5D NDP sing 346 n n C5D C4D NDP sing 347 n n C5D H51N NDP sing 348 n n C5D H52N NDP sing 349 n n C4D O4D NDP sing 350 n n C4D C3D NDP sing 351 n n C4D H4D NDP sing 352 n n O4D C1D NDP sing 353 n n C3D O3D NDP sing 354 n n C3D C2D NDP sing 355 n n C3D H3D NDP sing 356 n n O3D HO3N NDP sing 357 n n C2D O2D NDP sing 358 n n C2D C1D NDP sing 359 n n C2D H2D NDP sing 360 n n O2D HO2N NDP sing 361 n n C1D N1N NDP sing 362 n n C1D H1D NDP sing 363 n n N1N C2N NDP sing 364 n n N1N C6N NDP sing 365 n n C2N C3N NDP doub 366 n n C2N H2N NDP sing 367 n n C3N C7N NDP sing 368 n n C3N C4N NDP sing 369 n n C7N O7N NDP doub 370 n n C7N N7N NDP sing 371 n n N7N H71N NDP sing 372 n n N7N H72N NDP sing 373 n n C4N C5N NDP sing 374 n n C4N H41N NDP sing 375 n n C4N H42N NDP sing 376 n n C5N C6N NDP doub 377 n n C5N H5N NDP sing 378 n n C6N H6N NDP sing 379 n n P2B O1X NDP doub 380 n n P2B O2X NDP sing 381 n n P2B O3X NDP sing 382 n n O2X HOP2 NDP sing 383 n n O3X HOP3 NDP sing 384 n n # _atom_sites.entry_id 4P38 _atom_sites.fract_transf_matrix[1][1] 0.00966 _atom_sites.fract_transf_matrix[1][2] 0.005577 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 300 NDP NAP . D 3 21T A 1 302 1 21T INH . E 4 CL A 1 303 1 CL CL . F 2 NDP B 1 301 301 NDP NAP . G 3 21T B 1 302 2 21T INH . H 4 CL B 1 303 2 CL CL . I 5 HOH A 1 401 22 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 4 HOH HOH . I 5 HOH A 4 404 6 HOH HOH . I 5 HOH A 5 405 10 HOH HOH . I 5 HOH A 6 406 11 HOH HOH . I 5 HOH A 7 407 12 HOH HOH . I 5 HOH A 8 408 13 HOH HOH . I 5 HOH A 9 409 14 HOH HOH . I 5 HOH A 10 410 15 HOH HOH . I 5 HOH A 11 411 16 HOH HOH . I 5 HOH A 12 412 17 HOH HOH . I 5 HOH A 13 413 26 HOH HOH . I 5 HOH A 14 414 29 HOH HOH . I 5 HOH A 15 415 31 HOH HOH . I 5 HOH A 16 416 33 HOH HOH . I 5 HOH A 17 417 36 HOH HOH . I 5 HOH A 18 418 38 HOH HOH . I 5 HOH A 19 419 39 HOH HOH . J 5 HOH B 1 401 19 HOH HOH . J 5 HOH B 2 402 23 HOH HOH . J 5 HOH B 3 403 18 HOH HOH . J 5 HOH B 4 404 1 HOH HOH . J 5 HOH B 5 405 8 HOH HOH . J 5 HOH B 6 406 24 HOH HOH . J 5 HOH B 7 407 28 HOH HOH . J 5 HOH B 8 408 34 HOH HOH . J 5 HOH B 9 409 40 HOH HOH . J 5 HOH B 10 410 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -4.194 68.166 22.435 1 67.31 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . C 2 -2.859 67.52 22.422 1 68.39 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . C 2 -4.451 68.92 21.127 1 68.55 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . C 2 -4.261 69.154 23.642 1 67.33 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . C 2 -3.662 68.697 24.867 1 65.48 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . C 2 -3.724 69.833 25.846 1 67.98 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . C 2 -3.225 69.4 27.135 1 69.66 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . C 2 -2.917 71.067 25.456 1 69.96 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . C 2 -3.572 72.269 25.845 1 71.28 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . C 2 -1.627 70.845 26.23 1 71.23 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . C 2 -0.912 72.09 26.362 1 70.26 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . C 2 -2.136 70.209 27.526 1 68.31 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . C 2 -1.197 69.392 28.296 1 62.85 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . C 2 -0.335 68.434 27.822 1 63.42 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . C 2 0.454 67.923 28.736 1 63.01 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . C 2 0.086 68.587 29.899 1 60.5 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . C 2 0.565 68.524 31.23 1 60.25 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . C 2 1.511 67.665 31.646 1 59.95 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . C 2 -0.008 69.347 32.143 1 58.5 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . C 2 -1.007 70.151 31.755 1 56.26 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . C 2 -1.552 70.283 30.541 1 55.38 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . C 2 -0.945 69.483 29.646 1 58.6 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . C 2 -5.264 67.002 22.685 1 67.98 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . C 2 -6.686 66.532 22.125 1 69.66 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . C 2 -6.42 65.641 20.967 1 63.86 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . C 2 -7.554 67.726 21.994 1 71.48 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . C 2 -7.217 65.639 23.334 1 69.47 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . C 2 -7.997 66.17 24.436 1 66.39 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . C 2 -8.681 65.039 25.171 1 61.86 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . C 2 -9.45 64.246 24.237 1 61.98 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . C 2 -7.749 64.055 25.874 1 60.92 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . C 2 -8.263 63.701 27.147 1 60.93 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . C 2 -7.765 62.853 24.934 1 64.06 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . C 2 -7.478 61.632 25.609 1 65.97 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . C 2 -9.228 62.877 24.467 1 62.45 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . C 2 -9.4 62.073 23.186 1 61.52 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . C 2 -8.837 62.593 21.986 1 62.91 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . C 2 -8.808 61.809 20.844 1 63.16 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . C 2 -8.288 62.366 19.537 1 65.98 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . C 2 -8.099 61.596 18.575 1 67.94 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . C 2 -7.983 63.678 19.481 1 66.7 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . C 2 -9.346 60.52 20.901 1 62.2 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . C 2 -9.943 60.05 22.068 1 58.13 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . C 2 -9.966 60.852 23.205 1 57.62 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . C 2 0.571 72.162 26.86 1 69.51 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . C 2 0.751 72.066 28.27 1 69.69 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . C 2 1.253 70.977 26.082 1 64.96 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . C 2 0.869 73.561 26.26 1 70 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #