data_4P38 # _model_server_result.job_id h-9KvYRI4JVK0bBJEeFmeg _model_server_result.datetime_utc '2024-11-04 23:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4P38 # _exptl.entry_id 4P38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P38 _cell.length_a 103.516 _cell.length_b 103.516 _cell.length_c 134.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 44.926667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 303 n n PA O2A NDP sing 304 n n PA O5B NDP sing 305 n n PA O3 NDP sing 306 n n O2A HOA2 NDP sing 307 n n O5B C5B NDP sing 308 n n C5B C4B NDP sing 309 n n C5B H51A NDP sing 310 n n C5B H52A NDP sing 311 n n C4B O4B NDP sing 312 n n C4B C3B NDP sing 313 n n C4B H4B NDP sing 314 n n O4B C1B NDP sing 315 n n C3B O3B NDP sing 316 n n C3B C2B NDP sing 317 n n C3B H3B NDP sing 318 n n O3B HO3A NDP sing 319 n n C2B O2B NDP sing 320 n n C2B C1B NDP sing 321 n n C2B H2B NDP sing 322 n n O2B P2B NDP sing 323 n n C1B N9A NDP sing 324 n n C1B H1B NDP sing 325 n n N9A C8A NDP sing 326 n y N9A C4A NDP sing 327 n y C8A N7A NDP doub 328 n y C8A H8A NDP sing 329 n n N7A C5A NDP sing 330 n y C5A C6A NDP sing 331 n y C5A C4A NDP doub 332 n y C6A N6A NDP sing 333 n n C6A N1A NDP doub 334 n y N6A H61A NDP sing 335 n n N6A H62A NDP sing 336 n n N1A C2A NDP sing 337 n y C2A N3A NDP doub 338 n y C2A H2A NDP sing 339 n n N3A C4A NDP sing 340 n y O3 PN NDP sing 341 n n PN O1N NDP doub 342 n n PN O2N NDP sing 343 n n PN O5D NDP sing 344 n n O2N H21N NDP sing 345 n n O5D C5D NDP sing 346 n n C5D C4D NDP sing 347 n n C5D H51N NDP sing 348 n n C5D H52N NDP sing 349 n n C4D O4D NDP sing 350 n n C4D C3D NDP sing 351 n n C4D H4D NDP sing 352 n n O4D C1D NDP sing 353 n n C3D O3D NDP sing 354 n n C3D C2D NDP sing 355 n n C3D H3D NDP sing 356 n n O3D HO3N NDP sing 357 n n C2D O2D NDP sing 358 n n C2D C1D NDP sing 359 n n C2D H2D NDP sing 360 n n O2D HO2N NDP sing 361 n n C1D N1N NDP sing 362 n n C1D H1D NDP sing 363 n n N1N C2N NDP sing 364 n n N1N C6N NDP sing 365 n n C2N C3N NDP doub 366 n n C2N H2N NDP sing 367 n n C3N C7N NDP sing 368 n n C3N C4N NDP sing 369 n n C7N O7N NDP doub 370 n n C7N N7N NDP sing 371 n n N7N H71N NDP sing 372 n n N7N H72N NDP sing 373 n n C4N C5N NDP sing 374 n n C4N H41N NDP sing 375 n n C4N H42N NDP sing 376 n n C5N C6N NDP doub 377 n n C5N H5N NDP sing 378 n n C6N H6N NDP sing 379 n n P2B O1X NDP doub 380 n n P2B O2X NDP sing 381 n n P2B O3X NDP sing 382 n n O2X HOP2 NDP sing 383 n n O3X HOP3 NDP sing 384 n n # _atom_sites.entry_id 4P38 _atom_sites.fract_transf_matrix[1][1] 0.00966 _atom_sites.fract_transf_matrix[1][2] 0.005577 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 300 NDP NAP . D 3 21T A 1 302 1 21T INH . E 4 CL A 1 303 1 CL CL . F 2 NDP B 1 301 301 NDP NAP . G 3 21T B 1 302 2 21T INH . H 4 CL B 1 303 2 CL CL . I 5 HOH A 1 401 22 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 4 HOH HOH . I 5 HOH A 4 404 6 HOH HOH . I 5 HOH A 5 405 10 HOH HOH . I 5 HOH A 6 406 11 HOH HOH . I 5 HOH A 7 407 12 HOH HOH . I 5 HOH A 8 408 13 HOH HOH . I 5 HOH A 9 409 14 HOH HOH . I 5 HOH A 10 410 15 HOH HOH . I 5 HOH A 11 411 16 HOH HOH . I 5 HOH A 12 412 17 HOH HOH . I 5 HOH A 13 413 26 HOH HOH . I 5 HOH A 14 414 29 HOH HOH . I 5 HOH A 15 415 31 HOH HOH . I 5 HOH A 16 416 33 HOH HOH . I 5 HOH A 17 417 36 HOH HOH . I 5 HOH A 18 418 38 HOH HOH . I 5 HOH A 19 419 39 HOH HOH . J 5 HOH B 1 401 19 HOH HOH . J 5 HOH B 2 402 23 HOH HOH . J 5 HOH B 3 403 18 HOH HOH . J 5 HOH B 4 404 1 HOH HOH . J 5 HOH B 5 405 8 HOH HOH . J 5 HOH B 6 406 24 HOH HOH . J 5 HOH B 7 407 28 HOH HOH . J 5 HOH B 8 408 34 HOH HOH . J 5 HOH B 9 409 40 HOH HOH . J 5 HOH B 10 410 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 2 -6.723 39.083 51.083 1 67.9 ? PA NDP 301 B 1 HETATM 2 O O1A NDP . . . F 2 -6.733 40.346 51.873 1 62.82 ? O1A NDP 301 B 1 HETATM 3 O O2A NDP . . . F 2 -7.22 37.894 51.928 1 61.85 ? O2A NDP 301 B 1 HETATM 4 O O5B NDP . . . F 2 -5.248 38.788 50.609 1 71.66 ? O5B NDP 301 B 1 HETATM 5 C C5B NDP . . . F 2 -4.481 39.79 49.916 1 69.54 ? C5B NDP 301 B 1 HETATM 6 C C4B NDP . . . F 2 -3.054 39.317 49.824 1 68.86 ? C4B NDP 301 B 1 HETATM 7 O O4B NDP . . . F 2 -2.213 40.415 49.393 1 70.99 ? O4B NDP 301 B 1 HETATM 8 C C3B NDP . . . F 2 -2.448 38.788 51.122 1 68.47 ? C3B NDP 301 B 1 HETATM 9 O O3B NDP . . . F 2 -1.724 37.574 50.953 1 69.05 ? O3B NDP 301 B 1 HETATM 10 C C2B NDP . . . F 2 -1.56 39.936 51.584 1 69.81 ? C2B NDP 301 B 1 HETATM 11 O O2B NDP . . . F 2 -0.454 39.498 52.397 1 72.7 ? O2B NDP 301 B 1 HETATM 12 C C1B NDP . . . F 2 -1.109 40.558 50.266 1 67.86 ? C1B NDP 301 B 1 HETATM 13 N N9A NDP . . . F 2 -0.778 41.979 50.377 1 61.45 ? N9A NDP 301 B 1 HETATM 14 C C8A NDP . . . F 2 -1.555 42.949 50.957 1 60.92 ? C8A NDP 301 B 1 HETATM 15 N N7A NDP . . . F 2 -1.008 44.139 50.965 1 58.18 ? N7A NDP 301 B 1 HETATM 16 C C5A NDP . . . F 2 0.218 43.942 50.347 1 58 ? C5A NDP 301 B 1 HETATM 17 C C6A NDP . . . F 2 1.283 44.821 50.049 1 59.58 ? C6A NDP 301 B 1 HETATM 18 N N6A NDP . . . F 2 1.295 46.118 50.407 1 60.48 ? N6A NDP 301 B 1 HETATM 19 N N1A NDP . . . F 2 2.354 44.31 49.394 1 55.85 ? N1A NDP 301 B 1 HETATM 20 C C2A NDP . . . F 2 2.363 43.006 49.093 1 54.87 ? C2A NDP 301 B 1 HETATM 21 N N3A NDP . . . F 2 1.431 42.078 49.346 1 55.44 ? N3A NDP 301 B 1 HETATM 22 C C4A NDP . . . F 2 0.372 42.616 49.973 1 57.25 ? C4A NDP 301 B 1 HETATM 23 O O3 NDP . . . F 2 -7.638 39.264 49.775 1 71.43 ? O3 NDP 301 B 1 HETATM 24 P PN NDP . . . F 2 -8.438 38.257 48.812 1 68.99 ? PN NDP 301 B 1 HETATM 25 O O1N NDP . . . F 2 -9.874 38.353 49.169 1 63.89 ? O1N NDP 301 B 1 HETATM 26 O O2N NDP . . . F 2 -7.74 36.949 48.88 1 64.93 ? O2N NDP 301 B 1 HETATM 27 O O5D NDP . . . F 2 -8.275 38.928 47.372 1 67.91 ? O5D NDP 301 B 1 HETATM 28 C C5D NDP . . . F 2 -7.342 38.4 46.398 1 67.44 ? C5D NDP 301 B 1 HETATM 29 C C4D NDP . . . F 2 -7.577 39.017 45.038 1 65.23 ? C4D NDP 301 B 1 HETATM 30 O O4D NDP . . . F 2 -8.937 38.769 44.623 1 64.77 ? O4D NDP 301 B 1 HETATM 31 C C3D NDP . . . F 2 -7.383 40.528 44.917 1 63.25 ? C3D NDP 301 B 1 HETATM 32 O O3D NDP . . . F 2 -6.73 40.855 43.687 1 60.89 ? O3D NDP 301 B 1 HETATM 33 C C2D NDP . . . F 2 -8.819 41.048 45.01 1 61.48 ? C2D NDP 301 B 1 HETATM 34 O O2D NDP . . . F 2 -9.011 42.281 44.325 1 62.66 ? O2D NDP 301 B 1 HETATM 35 C C1D NDP . . . F 2 -9.55 39.962 44.208 1 62.04 ? C1D NDP 301 B 1 HETATM 36 N N1N NDP . . . F 2 -11.025 39.919 44.506 1 60.43 ? N1N NDP 301 B 1 HETATM 37 C C2N NDP . . . F 2 -11.454 39.436 45.749 1 62.92 ? C2N NDP 301 B 1 HETATM 38 C C3N NDP . . . F 2 -12.796 39.451 46.079 1 65.11 ? C3N NDP 301 B 1 HETATM 39 C C7N NDP . . . F 2 -13.252 38.964 47.424 1 69.56 ? C7N NDP 301 B 1 HETATM 40 O O7N NDP . . . F 2 -14.436 39.114 47.759 1 72.83 ? O7N NDP 301 B 1 HETATM 41 N N7N NDP . . . F 2 -12.344 38.458 48.241 1 70.63 ? N7N NDP 301 B 1 HETATM 42 C C4N NDP . . . F 2 -13.707 39.929 45.141 1 64.53 ? C4N NDP 301 B 1 HETATM 43 C C5N NDP . . . F 2 -13.269 40.381 43.906 1 63.2 ? C5N NDP 301 B 1 HETATM 44 C C6N NDP . . . F 2 -11.916 40.367 43.604 1 60.47 ? C6N NDP 301 B 1 HETATM 45 P P2B NDP . . . F 2 0.16 40.42 53.516 1 69.87 ? P2B NDP 301 B 1 HETATM 46 O O1X NDP . . . F 2 -0.805 41.249 54.288 1 71.05 ? O1X NDP 301 B 1 HETATM 47 O O2X NDP . . . F 2 0.849 39.345 54.28 1 71.55 ? O2X NDP 301 B 1 HETATM 48 O O3X NDP . . . F 2 1.211 41.167 52.725 1 66.08 ? O3X NDP 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #