data_4P3G # _model_server_result.job_id B2ns7E47uIaIyPOZLZjh0w _model_server_result.datetime_utc '2024-12-27 16:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4P3G # _exptl.entry_id 4P3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P3G _cell.length_a 46.84 _cell.length_b 95.05 _cell.length_c 223.859 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P3G _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 87 A ALA 80 1_555 A N MSE 88 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 88 A MSE 81 1_555 A N ALA 89 A ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 89 A ALA 82 1_555 A N MSE 90 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 90 A MSE 83 1_555 A N LYS 91 A LYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C GLY 100 A GLY 93 1_555 A N MSE 101 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 101 A MSE 94 1_555 A N THR 102 A THR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C SER 197 A SER 190 1_555 A N MSE 198 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 A C MSE 198 A MSE 191 1_555 A N ARG 199 A ARG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C ALA 87 B ALA 80 1_555 B N MSE 88 B MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 88 B MSE 81 1_555 B N ALA 89 B ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C ALA 89 B ALA 82 1_555 B N MSE 90 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 90 B MSE 83 1_555 B N LYS 91 B LYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale13 B C GLY 100 B GLY 93 1_555 B N MSE 101 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 101 B MSE 94 1_555 B N THR 102 B THR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C SER 197 B SER 190 1_555 B N MSE 198 B MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 B C MSE 198 B MSE 191 1_555 B N ARG 199 B ARG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C ALA 87 C ALA 80 1_555 C N MSE 88 C MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale18 C C MSE 88 C MSE 81 1_555 C N ALA 89 C ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 C C ALA 89 C ALA 82 1_555 C N MSE 90 C MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 C C MSE 90 C MSE 83 1_555 C N LYS 91 C LYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 C C MSE 101 C MSE 94 1_555 C N THR 102 C THR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 C C SER 197 C SER 190 1_555 C N MSE 198 C MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale23 C C MSE 198 C MSE 191 1_555 C N ARG 199 C ARG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale24 D C ALA 87 D ALA 80 1_555 D N MSE 88 D MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale25 D C MSE 88 D MSE 81 1_555 D N ALA 89 D ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 D C ALA 89 D ALA 82 1_555 D N MSE 90 D MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 D C MSE 90 D MSE 83 1_555 D N LYS 91 D LYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale28 D C GLY 100 D GLY 93 1_555 D N MSE 101 D MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale29 D C MSE 101 D MSE 94 1_555 D N THR 102 D THR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale30 D C SER 197 D SER 190 1_555 D N MSE 198 D MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale31 D C MSE 198 D MSE 191 1_555 D N ARG 199 D ARG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4P3G _atom_sites.fract_transf_matrix[1][1] 0.021349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 301 5 PO4 PO4 . F 2 PO4 B 1 301 1 PO4 PO4 . G 2 PO4 B 1 302 4 PO4 PO4 . H 2 PO4 C 1 301 2 PO4 PO4 . I 2 PO4 D 1 301 3 PO4 PO4 . J 3 HOH A 1 401 5 HOH HOH . J 3 HOH A 2 402 8 HOH HOH . J 3 HOH A 3 403 9 HOH HOH . K 3 HOH B 1 401 1 HOH HOH . K 3 HOH B 2 402 2 HOH HOH . K 3 HOH B 3 403 6 HOH HOH . L 3 HOH C 1 401 10 HOH HOH . L 3 HOH C 2 402 4 HOH HOH . L 3 HOH C 3 403 11 HOH HOH . L 3 HOH C 4 404 12 HOH HOH . M 3 HOH D 1 401 3 HOH HOH . M 3 HOH D 2 402 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 2 -27.096 -22.797 -39.169 1 143.77 ? P PO4 302 B 1 HETATM 2 O O1 PO4 . . . G 2 -27.789 -21.822 -40.091 1 144.12 ? O1 PO4 302 B 1 HETATM 3 O O2 PO4 . . . G 2 -27.342 -24.199 -39.643 1 146.3 ? O2 PO4 302 B 1 HETATM 4 O O3 PO4 . . . G 2 -27.661 -22.64 -37.774 1 146.48 ? O3 PO4 302 B 1 HETATM 5 O O4 PO4 . . . G 2 -25.605 -22.567 -39.188 1 142.37 ? O4 PO4 302 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #