data_4P3Y # _model_server_result.job_id Dezc88PM6A2d2fgJsJQsNw _model_server_result.datetime_utc '2024-11-01 09:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4P3Y # _exptl.entry_id 4P3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P3Y _cell.length_a 74.318 _cell.length_b 78.19 _cell.length_c 122.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P3Y _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 26 A THR 26 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 C MG MG . A MG 401 1_555 D O3B GDP . A GDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 C MG MG . A MG 401 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 C MG MG . A MG 401 1_555 F O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc5 C MG MG . A MG 401 1_555 F O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 C MG MG . A MG 401 1_555 F O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 4P3Y _atom_sites.fract_transf_matrix[1][1] 0.013456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 GDP A 1 402 1 GDP GDP . E 5 GOL A 1 403 1 GOL GOL . F 6 HOH A 1 501 232 HOH HOH . F 6 HOH A 2 502 52 HOH HOH . F 6 HOH A 3 503 20 HOH HOH . F 6 HOH A 4 504 32 HOH HOH . F 6 HOH A 5 505 201 HOH HOH . F 6 HOH A 6 506 149 HOH HOH . F 6 HOH A 7 507 189 HOH HOH . F 6 HOH A 8 508 61 HOH HOH . F 6 HOH A 9 509 104 HOH HOH . F 6 HOH A 10 510 36 HOH HOH . F 6 HOH A 11 511 166 HOH HOH . F 6 HOH A 12 512 195 HOH HOH . F 6 HOH A 13 513 13 HOH HOH . F 6 HOH A 14 514 198 HOH HOH . F 6 HOH A 15 515 129 HOH HOH . F 6 HOH A 16 516 234 HOH HOH . F 6 HOH A 17 517 250 HOH HOH . F 6 HOH A 18 518 123 HOH HOH . F 6 HOH A 19 519 12 HOH HOH . F 6 HOH A 20 520 89 HOH HOH . F 6 HOH A 21 521 133 HOH HOH . F 6 HOH A 22 522 128 HOH HOH . F 6 HOH A 23 523 71 HOH HOH . F 6 HOH A 24 524 208 HOH HOH . F 6 HOH A 25 525 172 HOH HOH . F 6 HOH A 26 526 19 HOH HOH . F 6 HOH A 27 527 17 HOH HOH . F 6 HOH A 28 528 49 HOH HOH . F 6 HOH A 29 529 3 HOH HOH . F 6 HOH A 30 530 91 HOH HOH . F 6 HOH A 31 531 199 HOH HOH . F 6 HOH A 32 532 188 HOH HOH . F 6 HOH A 33 533 54 HOH HOH . F 6 HOH A 34 534 239 HOH HOH . F 6 HOH A 35 535 83 HOH HOH . F 6 HOH A 36 536 171 HOH HOH . F 6 HOH A 37 537 82 HOH HOH . F 6 HOH A 38 538 21 HOH HOH . F 6 HOH A 39 539 73 HOH HOH . F 6 HOH A 40 540 38 HOH HOH . F 6 HOH A 41 541 186 HOH HOH . F 6 HOH A 42 542 182 HOH HOH . F 6 HOH A 43 543 74 HOH HOH . F 6 HOH A 44 544 87 HOH HOH . F 6 HOH A 45 545 7 HOH HOH . F 6 HOH A 46 546 93 HOH HOH . F 6 HOH A 47 547 66 HOH HOH . F 6 HOH A 48 548 156 HOH HOH . F 6 HOH A 49 549 94 HOH HOH . F 6 HOH A 50 550 235 HOH HOH . F 6 HOH A 51 551 151 HOH HOH . F 6 HOH A 52 552 148 HOH HOH . F 6 HOH A 53 553 29 HOH HOH . F 6 HOH A 54 554 27 HOH HOH . F 6 HOH A 55 555 30 HOH HOH . F 6 HOH A 56 556 35 HOH HOH . F 6 HOH A 57 557 169 HOH HOH . F 6 HOH A 58 558 8 HOH HOH . F 6 HOH A 59 559 193 HOH HOH . F 6 HOH A 60 560 105 HOH HOH . F 6 HOH A 61 561 10 HOH HOH . F 6 HOH A 62 562 229 HOH HOH . F 6 HOH A 63 563 4 HOH HOH . F 6 HOH A 64 564 43 HOH HOH . F 6 HOH A 65 565 213 HOH HOH . F 6 HOH A 66 566 130 HOH HOH . F 6 HOH A 67 567 34 HOH HOH . F 6 HOH A 68 568 144 HOH HOH . F 6 HOH A 69 569 196 HOH HOH . F 6 HOH A 70 570 228 HOH HOH . F 6 HOH A 71 571 11 HOH HOH . F 6 HOH A 72 572 22 HOH HOH . F 6 HOH A 73 573 72 HOH HOH . F 6 HOH A 74 574 164 HOH HOH . F 6 HOH A 75 575 24 HOH HOH . F 6 HOH A 76 576 65 HOH HOH . F 6 HOH A 77 577 40 HOH HOH . F 6 HOH A 78 578 115 HOH HOH . F 6 HOH A 79 579 96 HOH HOH . F 6 HOH A 80 580 45 HOH HOH . F 6 HOH A 81 581 57 HOH HOH . F 6 HOH A 82 582 25 HOH HOH . F 6 HOH A 83 583 251 HOH HOH . F 6 HOH A 84 584 126 HOH HOH . F 6 HOH A 85 585 217 HOH HOH . F 6 HOH A 86 586 183 HOH HOH . F 6 HOH A 87 587 85 HOH HOH . F 6 HOH A 88 588 16 HOH HOH . F 6 HOH A 89 589 28 HOH HOH . F 6 HOH A 90 590 108 HOH HOH . F 6 HOH A 91 591 220 HOH HOH . F 6 HOH A 92 592 15 HOH HOH . F 6 HOH A 93 593 62 HOH HOH . F 6 HOH A 94 594 174 HOH HOH . F 6 HOH A 95 595 64 HOH HOH . F 6 HOH A 96 596 118 HOH HOH . F 6 HOH A 97 597 6 HOH HOH . F 6 HOH A 98 598 223 HOH HOH . F 6 HOH A 99 599 80 HOH HOH . F 6 HOH A 100 600 122 HOH HOH . F 6 HOH A 101 601 59 HOH HOH . F 6 HOH A 102 602 173 HOH HOH . F 6 HOH A 103 603 18 HOH HOH . F 6 HOH A 104 604 227 HOH HOH . F 6 HOH A 105 605 107 HOH HOH . F 6 HOH A 106 606 125 HOH HOH . F 6 HOH A 107 607 48 HOH HOH . F 6 HOH A 108 608 112 HOH HOH . F 6 HOH A 109 609 120 HOH HOH . F 6 HOH A 110 610 141 HOH HOH . F 6 HOH A 111 611 23 HOH HOH . F 6 HOH A 112 612 170 HOH HOH . F 6 HOH A 113 613 63 HOH HOH . F 6 HOH A 114 614 142 HOH HOH . F 6 HOH A 115 615 68 HOH HOH . F 6 HOH A 116 616 39 HOH HOH . F 6 HOH A 117 617 147 HOH HOH . F 6 HOH A 118 618 218 HOH HOH . F 6 HOH A 119 619 76 HOH HOH . F 6 HOH A 120 620 41 HOH HOH . F 6 HOH A 121 621 86 HOH HOH . F 6 HOH A 122 622 134 HOH HOH . F 6 HOH A 123 623 101 HOH HOH . F 6 HOH A 124 624 225 HOH HOH . F 6 HOH A 125 625 135 HOH HOH . F 6 HOH A 126 626 116 HOH HOH . F 6 HOH A 127 627 55 HOH HOH . F 6 HOH A 128 628 75 HOH HOH . F 6 HOH A 129 629 26 HOH HOH . F 6 HOH A 130 630 180 HOH HOH . F 6 HOH A 131 631 117 HOH HOH . F 6 HOH A 132 632 136 HOH HOH . F 6 HOH A 133 633 203 HOH HOH . F 6 HOH A 134 634 84 HOH HOH . F 6 HOH A 135 635 81 HOH HOH . F 6 HOH A 136 636 200 HOH HOH . F 6 HOH A 137 637 121 HOH HOH . F 6 HOH A 138 638 67 HOH HOH . F 6 HOH A 139 639 102 HOH HOH . F 6 HOH A 140 640 192 HOH HOH . F 6 HOH A 141 641 216 HOH HOH . F 6 HOH A 142 642 175 HOH HOH . F 6 HOH A 143 643 150 HOH HOH . F 6 HOH A 144 644 181 HOH HOH . F 6 HOH A 145 645 119 HOH HOH . F 6 HOH A 146 646 222 HOH HOH . F 6 HOH A 147 647 146 HOH HOH . F 6 HOH A 148 648 60 HOH HOH . F 6 HOH A 149 649 178 HOH HOH . F 6 HOH A 150 650 137 HOH HOH . F 6 HOH A 151 651 207 HOH HOH . F 6 HOH A 152 652 99 HOH HOH . F 6 HOH A 153 653 163 HOH HOH . F 6 HOH A 154 654 190 HOH HOH . F 6 HOH A 155 655 214 HOH HOH . F 6 HOH A 156 656 5 HOH HOH . F 6 HOH A 157 657 152 HOH HOH . F 6 HOH A 158 658 140 HOH HOH . F 6 HOH A 159 659 79 HOH HOH . F 6 HOH A 160 660 100 HOH HOH . F 6 HOH A 161 661 179 HOH HOH . F 6 HOH A 162 662 205 HOH HOH . F 6 HOH A 163 663 224 HOH HOH . F 6 HOH A 164 664 165 HOH HOH . F 6 HOH A 165 665 231 HOH HOH . F 6 HOH A 166 666 168 HOH HOH . F 6 HOH A 167 667 51 HOH HOH . F 6 HOH A 168 668 191 HOH HOH . F 6 HOH A 169 669 211 HOH HOH . F 6 HOH A 170 670 233 HOH HOH . F 6 HOH A 171 671 249 HOH HOH . F 6 HOH A 172 672 209 HOH HOH . F 6 HOH A 173 673 238 HOH HOH . F 6 HOH A 174 674 246 HOH HOH . F 6 HOH A 175 675 212 HOH HOH . F 6 HOH A 176 676 158 HOH HOH . F 6 HOH A 177 677 155 HOH HOH . F 6 HOH A 178 678 92 HOH HOH . F 6 HOH A 179 679 243 HOH HOH . F 6 HOH A 180 680 160 HOH HOH . F 6 HOH A 181 681 88 HOH HOH . F 6 HOH A 182 682 53 HOH HOH . F 6 HOH A 183 683 167 HOH HOH . F 6 HOH A 184 684 114 HOH HOH . F 6 HOH A 185 685 248 HOH HOH . F 6 HOH A 186 686 145 HOH HOH . F 6 HOH A 187 687 185 HOH HOH . F 6 HOH A 188 688 230 HOH HOH . F 6 HOH A 189 689 90 HOH HOH . F 6 HOH A 190 690 153 HOH HOH . F 6 HOH A 191 691 194 HOH HOH . G 6 HOH B 1 201 50 HOH HOH . G 6 HOH B 2 202 95 HOH HOH . G 6 HOH B 3 203 110 HOH HOH . G 6 HOH B 4 204 56 HOH HOH . G 6 HOH B 5 205 204 HOH HOH . G 6 HOH B 6 206 77 HOH HOH . G 6 HOH B 7 207 131 HOH HOH . G 6 HOH B 8 208 106 HOH HOH . G 6 HOH B 9 209 2 HOH HOH . G 6 HOH B 10 210 215 HOH HOH . G 6 HOH B 11 211 176 HOH HOH . G 6 HOH B 12 212 187 HOH HOH . G 6 HOH B 13 213 226 HOH HOH . G 6 HOH B 14 214 37 HOH HOH . G 6 HOH B 15 215 124 HOH HOH . G 6 HOH B 16 216 47 HOH HOH . G 6 HOH B 17 217 44 HOH HOH . G 6 HOH B 18 218 154 HOH HOH . G 6 HOH B 19 219 42 HOH HOH . G 6 HOH B 20 220 69 HOH HOH . G 6 HOH B 21 221 33 HOH HOH . G 6 HOH B 22 222 9 HOH HOH . G 6 HOH B 23 223 132 HOH HOH . G 6 HOH B 24 224 31 HOH HOH . G 6 HOH B 25 225 1 HOH HOH . G 6 HOH B 26 226 247 HOH HOH . G 6 HOH B 27 227 161 HOH HOH . G 6 HOH B 28 228 202 HOH HOH . G 6 HOH B 29 229 111 HOH HOH . G 6 HOH B 30 230 197 HOH HOH . G 6 HOH B 31 231 58 HOH HOH . G 6 HOH B 32 232 219 HOH HOH . G 6 HOH B 33 233 113 HOH HOH . G 6 HOH B 34 234 242 HOH HOH . G 6 HOH B 35 235 241 HOH HOH . G 6 HOH B 36 236 78 HOH HOH . G 6 HOH B 37 237 98 HOH HOH . G 6 HOH B 38 238 103 HOH HOH . G 6 HOH B 39 239 206 HOH HOH . G 6 HOH B 40 240 138 HOH HOH . G 6 HOH B 41 241 236 HOH HOH . G 6 HOH B 42 242 162 HOH HOH . G 6 HOH B 43 243 46 HOH HOH . G 6 HOH B 44 244 184 HOH HOH . G 6 HOH B 45 245 245 HOH HOH . G 6 HOH B 46 246 237 HOH HOH . G 6 HOH B 47 247 14 HOH HOH . G 6 HOH B 48 248 127 HOH HOH . G 6 HOH B 49 249 157 HOH HOH . G 6 HOH B 50 250 70 HOH HOH . G 6 HOH B 51 251 143 HOH HOH . G 6 HOH B 52 252 159 HOH HOH . G 6 HOH B 53 253 139 HOH HOH . G 6 HOH B 54 254 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 12.241 -37.502 16.951 1 73.19 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 5 11.224 -36.553 16.702 1 65.81 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 5 11.677 -38.921 16.907 1 77.26 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 5 10.382 -38.899 16.333 1 78.55 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 5 12.598 -39.835 16.093 1 75.12 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 5 13.956 -39.649 16.448 1 70.26 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . E 5 12.638 -37.335 17.947 1 73.19 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . E 5 13.046 -37.382 16.226 1 73.19 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . E 5 11.41 -36.132 15.84 1 65.81 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . E 5 11.621 -39.304 17.926 1 77.26 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . E 5 10.439 -38.574 15.41 1 78.55 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . E 5 12.467 -39.65 15.03 1 75.12 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . E 5 12.322 -40.873 16.279 1 75.12 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . E 5 14.494 -40.379 16.077 1 70.26 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #