data_4P3Z # _model_server_result.job_id Lg_x-y8dafryjxph1XGUUA _model_server_result.datetime_utc '2024-11-05 00:09:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 4P3Z # _exptl.entry_id 4P3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P3Z _cell.length_a 62.7 _cell.length_b 62.7 _cell.length_c 85.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P3Z _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 274 A LEU 248 1_555 A N MLZ 275 A MLZ 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MLZ 275 A MLZ 249 1_555 A N ARG 276 A ARG 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 A C HIS 338 A HIS 312 1_555 A N MLZ 339 A MLZ 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MLZ 339 A MLZ 313 1_555 A N ILE 340 A ILE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 A C SER 349 A SER 323 1_555 A N MLZ 350 A MLZ 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MLZ 350 A MLZ 324 1_555 A N VAL 351 A VAL 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale7 A C ASP 389 A ASP 363 1_555 A N MLZ 390 A MLZ 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MLZ 390 A MLZ 364 1_555 A N ARG 391 A ARG 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4P3Z _atom_sites.fract_transf_matrix[1][1] 0.015949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 2 SO4 A 1 403 3 SO4 SO4 . E 2 SO4 A 1 404 4 SO4 SO4 . F 2 SO4 A 1 405 5 SO4 SO4 . G 3 GOL A 1 406 1 GOL GOL . H 3 GOL A 1 407 2 GOL GOL . I 4 HOH A 1 501 105 HOH HOH . I 4 HOH A 2 502 1 HOH HOH . I 4 HOH A 3 503 26 HOH HOH . I 4 HOH A 4 504 72 HOH HOH . I 4 HOH A 5 505 66 HOH HOH . I 4 HOH A 6 506 53 HOH HOH . I 4 HOH A 7 507 57 HOH HOH . I 4 HOH A 8 508 15 HOH HOH . I 4 HOH A 9 509 138 HOH HOH . I 4 HOH A 10 510 146 HOH HOH . I 4 HOH A 11 511 8 HOH HOH . I 4 HOH A 12 512 92 HOH HOH . I 4 HOH A 13 513 20 HOH HOH . I 4 HOH A 14 514 127 HOH HOH . I 4 HOH A 15 515 134 HOH HOH . I 4 HOH A 16 516 35 HOH HOH . I 4 HOH A 17 517 7 HOH HOH . I 4 HOH A 18 518 131 HOH HOH . I 4 HOH A 19 519 95 HOH HOH . I 4 HOH A 20 520 132 HOH HOH . I 4 HOH A 21 521 16 HOH HOH . I 4 HOH A 22 522 45 HOH HOH . I 4 HOH A 23 523 142 HOH HOH . I 4 HOH A 24 524 133 HOH HOH . I 4 HOH A 25 525 119 HOH HOH . I 4 HOH A 26 526 42 HOH HOH . I 4 HOH A 27 527 13 HOH HOH . I 4 HOH A 28 528 54 HOH HOH . I 4 HOH A 29 529 128 HOH HOH . I 4 HOH A 30 530 120 HOH HOH . I 4 HOH A 31 531 3 HOH HOH . I 4 HOH A 32 532 48 HOH HOH . I 4 HOH A 33 533 124 HOH HOH . I 4 HOH A 34 534 38 HOH HOH . I 4 HOH A 35 535 30 HOH HOH . I 4 HOH A 36 536 33 HOH HOH . I 4 HOH A 37 537 43 HOH HOH . I 4 HOH A 38 538 151 HOH HOH . I 4 HOH A 39 539 78 HOH HOH . I 4 HOH A 40 540 70 HOH HOH . I 4 HOH A 41 541 113 HOH HOH . I 4 HOH A 42 542 68 HOH HOH . I 4 HOH A 43 543 29 HOH HOH . I 4 HOH A 44 544 50 HOH HOH . I 4 HOH A 45 545 18 HOH HOH . I 4 HOH A 46 546 36 HOH HOH . I 4 HOH A 47 547 10 HOH HOH . I 4 HOH A 48 548 34 HOH HOH . I 4 HOH A 49 549 122 HOH HOH . I 4 HOH A 50 550 69 HOH HOH . I 4 HOH A 51 551 80 HOH HOH . I 4 HOH A 52 552 82 HOH HOH . I 4 HOH A 53 553 52 HOH HOH . I 4 HOH A 54 554 123 HOH HOH . I 4 HOH A 55 555 51 HOH HOH . I 4 HOH A 56 556 61 HOH HOH . I 4 HOH A 57 557 62 HOH HOH . I 4 HOH A 58 558 75 HOH HOH . I 4 HOH A 59 559 37 HOH HOH . I 4 HOH A 60 560 81 HOH HOH . I 4 HOH A 61 561 2 HOH HOH . I 4 HOH A 62 562 4 HOH HOH . I 4 HOH A 63 563 5 HOH HOH . I 4 HOH A 64 564 6 HOH HOH . I 4 HOH A 65 565 9 HOH HOH . I 4 HOH A 66 566 11 HOH HOH . I 4 HOH A 67 567 12 HOH HOH . I 4 HOH A 68 568 14 HOH HOH . I 4 HOH A 69 569 17 HOH HOH . I 4 HOH A 70 570 19 HOH HOH . I 4 HOH A 71 571 21 HOH HOH . I 4 HOH A 72 572 22 HOH HOH . I 4 HOH A 73 573 23 HOH HOH . I 4 HOH A 74 574 24 HOH HOH . I 4 HOH A 75 575 25 HOH HOH . I 4 HOH A 76 576 27 HOH HOH . I 4 HOH A 77 577 28 HOH HOH . I 4 HOH A 78 578 31 HOH HOH . I 4 HOH A 79 579 32 HOH HOH . I 4 HOH A 80 580 39 HOH HOH . I 4 HOH A 81 581 40 HOH HOH . I 4 HOH A 82 582 41 HOH HOH . I 4 HOH A 83 583 44 HOH HOH . I 4 HOH A 84 584 46 HOH HOH . I 4 HOH A 85 585 47 HOH HOH . I 4 HOH A 86 586 49 HOH HOH . I 4 HOH A 87 587 55 HOH HOH . I 4 HOH A 88 588 56 HOH HOH . I 4 HOH A 89 589 58 HOH HOH . I 4 HOH A 90 590 59 HOH HOH . I 4 HOH A 91 591 60 HOH HOH . I 4 HOH A 92 592 63 HOH HOH . I 4 HOH A 93 593 64 HOH HOH . I 4 HOH A 94 594 65 HOH HOH . I 4 HOH A 95 595 67 HOH HOH . I 4 HOH A 96 596 71 HOH HOH . I 4 HOH A 97 597 73 HOH HOH . I 4 HOH A 98 598 74 HOH HOH . I 4 HOH A 99 599 76 HOH HOH . I 4 HOH A 100 600 77 HOH HOH . I 4 HOH A 101 601 79 HOH HOH . I 4 HOH A 102 602 83 HOH HOH . I 4 HOH A 103 603 84 HOH HOH . I 4 HOH A 104 604 85 HOH HOH . I 4 HOH A 105 605 86 HOH HOH . I 4 HOH A 106 606 87 HOH HOH . I 4 HOH A 107 607 88 HOH HOH . I 4 HOH A 108 608 89 HOH HOH . I 4 HOH A 109 609 90 HOH HOH . I 4 HOH A 110 610 91 HOH HOH . I 4 HOH A 111 611 93 HOH HOH . I 4 HOH A 112 612 94 HOH HOH . I 4 HOH A 113 613 96 HOH HOH . I 4 HOH A 114 614 97 HOH HOH . I 4 HOH A 115 615 98 HOH HOH . I 4 HOH A 116 616 99 HOH HOH . I 4 HOH A 117 617 100 HOH HOH . I 4 HOH A 118 618 101 HOH HOH . I 4 HOH A 119 619 102 HOH HOH . I 4 HOH A 120 620 103 HOH HOH . I 4 HOH A 121 621 104 HOH HOH . I 4 HOH A 122 622 106 HOH HOH . I 4 HOH A 123 623 107 HOH HOH . I 4 HOH A 124 624 108 HOH HOH . I 4 HOH A 125 625 109 HOH HOH . I 4 HOH A 126 626 110 HOH HOH . I 4 HOH A 127 627 111 HOH HOH . I 4 HOH A 128 628 112 HOH HOH . I 4 HOH A 129 629 114 HOH HOH . I 4 HOH A 130 630 115 HOH HOH . I 4 HOH A 131 631 116 HOH HOH . I 4 HOH A 132 632 117 HOH HOH . I 4 HOH A 133 633 118 HOH HOH . I 4 HOH A 134 634 121 HOH HOH . I 4 HOH A 135 635 125 HOH HOH . I 4 HOH A 136 636 126 HOH HOH . I 4 HOH A 137 637 129 HOH HOH . I 4 HOH A 138 638 130 HOH HOH . I 4 HOH A 139 639 135 HOH HOH . I 4 HOH A 140 640 136 HOH HOH . I 4 HOH A 141 641 137 HOH HOH . I 4 HOH A 142 642 139 HOH HOH . I 4 HOH A 143 643 140 HOH HOH . I 4 HOH A 144 644 141 HOH HOH . I 4 HOH A 145 645 143 HOH HOH . I 4 HOH A 146 646 144 HOH HOH . I 4 HOH A 147 647 145 HOH HOH . I 4 HOH A 148 648 147 HOH HOH . I 4 HOH A 149 649 148 HOH HOH . I 4 HOH A 150 650 149 HOH HOH . I 4 HOH A 151 651 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -56.103 -54.712 -28.927 1 60.16 ? C1 GOL 406 A 1 HETATM 2 O O1 GOL . . . G 3 -54.875 -55.44 -28.884 1 62.7 ? O1 GOL 406 A 1 HETATM 3 C C2 GOL . . . G 3 -57.256 -55.516 -28.35 1 57.56 ? C2 GOL 406 A 1 HETATM 4 O O2 GOL . . . G 3 -57.02 -55.853 -26.976 1 61.82 ? O2 GOL 406 A 1 HETATM 5 C C3 GOL . . . G 3 -58.487 -54.642 -28.475 1 49.21 ? C3 GOL 406 A 1 HETATM 6 O O3 GOL . . . G 3 -58.972 -54.247 -27.192 1 46.56 ? O3 GOL 406 A 1 HETATM 7 H H11 GOL . . . G 3 -56.305 -54.477 -29.846 1 72.2 ? H11 GOL 406 A 1 HETATM 8 H H12 GOL . . . G 3 -56.005 -53.887 -28.426 1 72.2 ? H12 GOL 406 A 1 HETATM 9 H HO1 GOL . . . G 3 -54.26 -54.97 -29.209 1 75.24 ? HO1 GOL 406 A 1 HETATM 10 H H2 GOL . . . G 3 -57.38 -56.32 -28.879 1 69.07 ? H2 GOL 406 A 1 HETATM 11 H HO2 GOL . . . G 3 -56.904 -55.15 -26.531 1 74.18 ? HO2 GOL 406 A 1 HETATM 12 H H31 GOL . . . G 3 -59.182 -55.128 -28.947 1 59.05 ? H31 GOL 406 A 1 HETATM 13 H H32 GOL . . . G 3 -58.27 -53.853 -28.995 1 59.05 ? H32 GOL 406 A 1 HETATM 14 H HO3 GOL . . . G 3 -59.653 -53.765 -27.286 1 55.87 ? HO3 GOL 406 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #