data_4P4R
#
_model_server_result.job_id            HLdF680U_GA6Jy5SlX5MWw 
_model_server_result.datetime_utc      '2024-11-22 16:23:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    4P4R 
#
_exptl.entry_id    4P4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P4R 
_cell.length_a            77.25 
_cell.length_b            102.44 
_cell.length_c            120.878 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P4R 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 B SG CYS 38 B CYS 15 1_555 B SG CYS 100 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 138 B CYS 115 1_555 B SG CYS 194 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 C SG CYS 107 C CYS 107 1_555 C SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf5 D SG CYS 38 D CYS 15 1_555 D SG CYS 100 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf6 D SG CYS 138 D CYS 115 1_555 D SG CYS 194 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 F C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 E C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 C ND2 ASN 78 C ASN 78 1_555 H C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 C ND2 ASN 118 C ASN 118 1_555 G C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4P4R 
_atom_sites.fract_transf_matrix[1][1]    0.012945 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008273 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 201 1 NAG NAG . 
F 3 NAG A 1 202 2 NAG NAG . 
G 3 NAG C 1 201 1 NAG NAG . 
H 3 NAG C 1 202 2 NAG NAG . 
I 4 HOH A 1 301 25 HOH HOH . 
I 4 HOH A 2 302 89 HOH HOH . 
I 4 HOH A 3 303 160 HOH HOH . 
I 4 HOH A 4 304 57 HOH HOH . 
I 4 HOH A 5 305 93 HOH HOH . 
I 4 HOH A 6 306 4 HOH HOH . 
I 4 HOH A 7 307 90 HOH HOH . 
I 4 HOH A 8 308 94 HOH HOH . 
I 4 HOH A 9 309 2 HOH HOH . 
I 4 HOH A 10 310 8 HOH HOH . 
I 4 HOH A 11 311 10 HOH HOH . 
I 4 HOH A 12 312 13 HOH HOH . 
I 4 HOH A 13 313 15 HOH HOH . 
I 4 HOH A 14 314 19 HOH HOH . 
I 4 HOH A 15 315 22 HOH HOH . 
I 4 HOH A 16 316 29 HOH HOH . 
I 4 HOH A 17 317 31 HOH HOH . 
I 4 HOH A 18 318 32 HOH HOH . 
I 4 HOH A 19 319 36 HOH HOH . 
I 4 HOH A 20 320 41 HOH HOH . 
I 4 HOH A 21 321 43 HOH HOH . 
I 4 HOH A 22 322 49 HOH HOH . 
I 4 HOH A 23 323 52 HOH HOH . 
I 4 HOH A 24 324 53 HOH HOH . 
I 4 HOH A 25 325 62 HOH HOH . 
I 4 HOH A 26 326 70 HOH HOH . 
I 4 HOH A 27 327 72 HOH HOH . 
I 4 HOH A 28 328 75 HOH HOH . 
I 4 HOH A 29 329 100 HOH HOH . 
I 4 HOH A 30 330 111 HOH HOH . 
I 4 HOH A 31 331 112 HOH HOH . 
I 4 HOH A 32 332 123 HOH HOH . 
I 4 HOH A 33 333 129 HOH HOH . 
I 4 HOH A 34 334 130 HOH HOH . 
I 4 HOH A 35 335 141 HOH HOH . 
I 4 HOH A 36 336 145 HOH HOH . 
I 4 HOH A 37 337 153 HOH HOH . 
I 4 HOH A 38 338 163 HOH HOH . 
I 4 HOH A 39 339 173 HOH HOH . 
I 4 HOH A 40 340 178 HOH HOH . 
J 4 HOH B 1 301 6 HOH HOH . 
J 4 HOH B 2 302 14 HOH HOH . 
J 4 HOH B 3 303 18 HOH HOH . 
J 4 HOH B 4 304 30 HOH HOH . 
J 4 HOH B 5 305 47 HOH HOH . 
J 4 HOH B 6 306 56 HOH HOH . 
J 4 HOH B 7 307 63 HOH HOH . 
J 4 HOH B 8 308 84 HOH HOH . 
J 4 HOH B 9 309 87 HOH HOH . 
J 4 HOH B 10 310 91 HOH HOH . 
J 4 HOH B 11 311 119 HOH HOH . 
J 4 HOH B 12 312 124 HOH HOH . 
J 4 HOH B 13 313 168 HOH HOH . 
J 4 HOH B 14 314 175 HOH HOH . 
K 4 HOH C 1 301 27 HOH HOH . 
K 4 HOH C 2 302 151 HOH HOH . 
K 4 HOH C 3 303 54 HOH HOH . 
K 4 HOH C 4 304 7 HOH HOH . 
K 4 HOH C 5 305 9 HOH HOH . 
K 4 HOH C 6 306 12 HOH HOH . 
K 4 HOH C 7 307 16 HOH HOH . 
K 4 HOH C 8 308 17 HOH HOH . 
K 4 HOH C 9 309 28 HOH HOH . 
K 4 HOH C 10 310 33 HOH HOH . 
K 4 HOH C 11 311 39 HOH HOH . 
K 4 HOH C 12 312 44 HOH HOH . 
K 4 HOH C 13 313 46 HOH HOH . 
K 4 HOH C 14 314 55 HOH HOH . 
K 4 HOH C 15 315 61 HOH HOH . 
K 4 HOH C 16 316 65 HOH HOH . 
K 4 HOH C 17 317 66 HOH HOH . 
K 4 HOH C 18 318 76 HOH HOH . 
K 4 HOH C 19 319 78 HOH HOH . 
K 4 HOH C 20 320 80 HOH HOH . 
K 4 HOH C 21 321 95 HOH HOH . 
K 4 HOH C 22 322 98 HOH HOH . 
K 4 HOH C 23 323 106 HOH HOH . 
K 4 HOH C 24 324 110 HOH HOH . 
K 4 HOH C 25 325 120 HOH HOH . 
K 4 HOH C 26 326 139 HOH HOH . 
K 4 HOH C 27 327 147 HOH HOH . 
K 4 HOH C 28 328 150 HOH HOH . 
K 4 HOH C 29 329 152 HOH HOH . 
K 4 HOH C 30 330 154 HOH HOH . 
K 4 HOH C 31 331 156 HOH HOH . 
K 4 HOH C 32 332 161 HOH HOH . 
K 4 HOH C 33 333 169 HOH HOH . 
K 4 HOH C 34 334 170 HOH HOH . 
K 4 HOH C 35 335 176 HOH HOH . 
L 4 HOH D 1 301 73 HOH HOH . 
L 4 HOH D 2 302 83 HOH HOH . 
L 4 HOH D 3 303 103 HOH HOH . 
L 4 HOH D 4 304 20 HOH HOH . 
L 4 HOH D 5 305 45 HOH HOH . 
L 4 HOH D 6 306 48 HOH HOH . 
L 4 HOH D 7 307 82 HOH HOH . 
L 4 HOH D 8 308 34 HOH HOH . 
L 4 HOH D 9 309 1 HOH HOH . 
L 4 HOH D 10 310 11 HOH HOH . 
L 4 HOH D 11 311 21 HOH HOH . 
L 4 HOH D 12 312 26 HOH HOH . 
L 4 HOH D 13 313 38 HOH HOH . 
L 4 HOH D 14 314 40 HOH HOH . 
L 4 HOH D 15 315 42 HOH HOH . 
L 4 HOH D 16 316 50 HOH HOH . 
L 4 HOH D 17 317 51 HOH HOH . 
L 4 HOH D 18 318 67 HOH HOH . 
L 4 HOH D 19 319 68 HOH HOH . 
L 4 HOH D 20 320 69 HOH HOH . 
L 4 HOH D 21 321 81 HOH HOH . 
L 4 HOH D 22 322 86 HOH HOH . 
L 4 HOH D 23 323 88 HOH HOH . 
L 4 HOH D 24 324 92 HOH HOH . 
L 4 HOH D 25 325 101 HOH HOH . 
L 4 HOH D 26 326 104 HOH HOH . 
L 4 HOH D 27 327 134 HOH HOH . 
L 4 HOH D 28 328 140 HOH HOH . 
L 4 HOH D 29 329 166 HOH HOH . 
L 4 HOH D 30 330 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 3 47.632 -6.498 -41.88 1 119.64 ? C1 NAG 202 A 1 
HETATM 2 C C2 NAG . . . F 3 47.351 -6.085 -43.326 1 121.39 ? C2 NAG 202 A 1 
HETATM 3 C C3 NAG . . . F 3 48.337 -6.913 -44.151 1 121.66 ? C3 NAG 202 A 1 
HETATM 4 C C4 NAG . . . F 3 49.778 -6.607 -43.741 1 122.38 ? C4 NAG 202 A 1 
HETATM 5 C C5 NAG . . . F 3 49.976 -6.781 -42.232 1 123.1 ? C5 NAG 202 A 1 
HETATM 6 C C6 NAG . . . F 3 51.297 -6.245 -41.727 1 123.95 ? C6 NAG 202 A 1 
HETATM 7 C C7 NAG . . . F 3 45.283 -5.495 -44.553 1 123.11 ? C7 NAG 202 A 1 
HETATM 8 C C8 NAG . . . F 3 43.944 -5.994 -45.005 1 122.68 ? C8 NAG 202 A 1 
HETATM 9 N N2 NAG . . . F 3 45.985 -6.334 -43.765 1 122.51 ? N2 NAG 202 A 1 
HETATM 10 O O3 NAG . . . F 3 48.16 -6.658 -45.541 1 121.31 ? O3 NAG 202 A 1 
HETATM 11 O O4 NAG . . . F 3 50.639 -7.497 -44.447 1 121.84 ? O4 NAG 202 A 1 
HETATM 12 O O5 NAG . . . F 3 48.945 -6.09 -41.498 1 121.89 ? O5 NAG 202 A 1 
HETATM 13 O O6 NAG . . . F 3 51.488 -6.552 -40.35 1 124.04 ? O6 NAG 202 A 1 
HETATM 14 O O7 NAG . . . F 3 45.712 -4.392 -44.886 1 123.56 ? O7 NAG 202 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#