data_4P53
#
_model_server_result.job_id            5j2aQiYSr0Q82LJ56aT2WA 
_model_server_result.datetime_utc      '2025-08-31 17:19:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4P53 
#
_exptl.entry_id    4P53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4P53 
_cell.length_a            77.186 
_cell.length_b            77.186 
_cell.length_c            99.074 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 99.074 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 219 A GLU 213 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 A NE2 HIS 290 A HIS 284 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc3 A NE2 HIS 306 A HIS 300 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4P53 
_atom_sites.fract_transf_matrix[1][1]    0.012956 
_atom_sites.fract_transf_matrix[1][2]    0.00748 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01496 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 NAI A 1 502 502 NAI NAD . 
D 4 PEG A 1 503 503 PEG PEG . 
E 5 HOH A 1 601 302 HOH HOH . 
E 5 HOH A 2 602 250 HOH HOH . 
E 5 HOH A 3 603 81 HOH HOH . 
E 5 HOH A 4 604 294 HOH HOH . 
E 5 HOH A 5 605 301 HOH HOH . 
E 5 HOH A 6 606 249 HOH HOH . 
E 5 HOH A 7 607 47 HOH HOH . 
E 5 HOH A 8 608 233 HOH HOH . 
E 5 HOH A 9 609 212 HOH HOH . 
E 5 HOH A 10 610 194 HOH HOH . 
E 5 HOH A 11 611 30 HOH HOH . 
E 5 HOH A 12 612 77 HOH HOH . 
E 5 HOH A 13 613 304 HOH HOH . 
E 5 HOH A 14 614 75 HOH HOH . 
E 5 HOH A 15 615 272 HOH HOH . 
E 5 HOH A 16 616 190 HOH HOH . 
E 5 HOH A 17 617 273 HOH HOH . 
E 5 HOH A 18 618 149 HOH HOH . 
E 5 HOH A 19 619 20 HOH HOH . 
E 5 HOH A 20 620 307 HOH HOH . 
E 5 HOH A 21 621 150 HOH HOH . 
E 5 HOH A 22 622 191 HOH HOH . 
E 5 HOH A 23 623 183 HOH HOH . 
E 5 HOH A 24 624 122 HOH HOH . 
E 5 HOH A 25 625 317 HOH HOH . 
E 5 HOH A 26 626 46 HOH HOH . 
E 5 HOH A 27 627 109 HOH HOH . 
E 5 HOH A 28 628 102 HOH HOH . 
E 5 HOH A 29 629 305 HOH HOH . 
E 5 HOH A 30 630 261 HOH HOH . 
E 5 HOH A 31 631 298 HOH HOH . 
E 5 HOH A 32 632 13 HOH HOH . 
E 5 HOH A 33 633 74 HOH HOH . 
E 5 HOH A 34 634 257 HOH HOH . 
E 5 HOH A 35 635 255 HOH HOH . 
E 5 HOH A 36 636 293 HOH HOH . 
E 5 HOH A 37 637 200 HOH HOH . 
E 5 HOH A 38 638 232 HOH HOH . 
E 5 HOH A 39 639 42 HOH HOH . 
E 5 HOH A 40 640 310 HOH HOH . 
E 5 HOH A 41 641 192 HOH HOH . 
E 5 HOH A 42 642 226 HOH HOH . 
E 5 HOH A 43 643 251 HOH HOH . 
E 5 HOH A 44 644 253 HOH HOH . 
E 5 HOH A 45 645 240 HOH HOH . 
E 5 HOH A 46 646 281 HOH HOH . 
E 5 HOH A 47 647 312 HOH HOH . 
E 5 HOH A 48 648 297 HOH HOH . 
E 5 HOH A 49 649 130 HOH HOH . 
E 5 HOH A 50 650 286 HOH HOH . 
E 5 HOH A 51 651 197 HOH HOH . 
E 5 HOH A 52 652 313 HOH HOH . 
E 5 HOH A 53 653 315 HOH HOH . 
E 5 HOH A 54 654 308 HOH HOH . 
E 5 HOH A 55 655 141 HOH HOH . 
E 5 HOH A 56 656 269 HOH HOH . 
E 5 HOH A 57 657 314 HOH HOH . 
E 5 HOH A 58 658 3 HOH HOH . 
E 5 HOH A 59 659 5 HOH HOH . 
E 5 HOH A 60 660 7 HOH HOH . 
E 5 HOH A 61 661 8 HOH HOH . 
E 5 HOH A 62 662 14 HOH HOH . 
E 5 HOH A 63 663 15 HOH HOH . 
E 5 HOH A 64 664 24 HOH HOH . 
E 5 HOH A 65 665 25 HOH HOH . 
E 5 HOH A 66 666 32 HOH HOH . 
E 5 HOH A 67 667 34 HOH HOH . 
E 5 HOH A 68 668 35 HOH HOH . 
E 5 HOH A 69 669 38 HOH HOH . 
E 5 HOH A 70 670 40 HOH HOH . 
E 5 HOH A 71 671 45 HOH HOH . 
E 5 HOH A 72 672 50 HOH HOH . 
E 5 HOH A 73 673 52 HOH HOH . 
E 5 HOH A 74 674 54 HOH HOH . 
E 5 HOH A 75 675 55 HOH HOH . 
E 5 HOH A 76 676 58 HOH HOH . 
E 5 HOH A 77 677 59 HOH HOH . 
E 5 HOH A 78 678 61 HOH HOH . 
E 5 HOH A 79 679 63 HOH HOH . 
E 5 HOH A 80 680 65 HOH HOH . 
E 5 HOH A 81 681 67 HOH HOH . 
E 5 HOH A 82 682 68 HOH HOH . 
E 5 HOH A 83 683 76 HOH HOH . 
E 5 HOH A 84 684 78 HOH HOH . 
E 5 HOH A 85 685 79 HOH HOH . 
E 5 HOH A 86 686 84 HOH HOH . 
E 5 HOH A 87 687 92 HOH HOH . 
E 5 HOH A 88 688 93 HOH HOH . 
E 5 HOH A 89 689 97 HOH HOH . 
E 5 HOH A 90 690 103 HOH HOH . 
E 5 HOH A 91 691 105 HOH HOH . 
E 5 HOH A 92 692 107 HOH HOH . 
E 5 HOH A 93 693 112 HOH HOH . 
E 5 HOH A 94 694 113 HOH HOH . 
E 5 HOH A 95 695 115 HOH HOH . 
E 5 HOH A 96 696 119 HOH HOH . 
E 5 HOH A 97 697 120 HOH HOH . 
E 5 HOH A 98 698 134 HOH HOH . 
E 5 HOH A 99 699 137 HOH HOH . 
E 5 HOH A 100 700 138 HOH HOH . 
E 5 HOH A 101 701 146 HOH HOH . 
E 5 HOH A 102 702 147 HOH HOH . 
E 5 HOH A 103 703 148 HOH HOH . 
E 5 HOH A 104 704 151 HOH HOH . 
E 5 HOH A 105 705 152 HOH HOH . 
E 5 HOH A 106 706 154 HOH HOH . 
E 5 HOH A 107 707 156 HOH HOH . 
E 5 HOH A 108 708 157 HOH HOH . 
E 5 HOH A 109 709 158 HOH HOH . 
E 5 HOH A 110 710 159 HOH HOH . 
E 5 HOH A 111 711 160 HOH HOH . 
E 5 HOH A 112 712 161 HOH HOH . 
E 5 HOH A 113 713 162 HOH HOH . 
E 5 HOH A 114 714 163 HOH HOH . 
E 5 HOH A 115 715 166 HOH HOH . 
E 5 HOH A 116 716 184 HOH HOH . 
E 5 HOH A 117 717 186 HOH HOH . 
E 5 HOH A 118 718 187 HOH HOH . 
E 5 HOH A 119 719 188 HOH HOH . 
E 5 HOH A 120 720 189 HOH HOH . 
E 5 HOH A 121 721 195 HOH HOH . 
E 5 HOH A 122 722 196 HOH HOH . 
E 5 HOH A 123 723 198 HOH HOH . 
E 5 HOH A 124 724 201 HOH HOH . 
E 5 HOH A 125 725 202 HOH HOH . 
E 5 HOH A 126 726 206 HOH HOH . 
E 5 HOH A 127 727 208 HOH HOH . 
E 5 HOH A 128 728 209 HOH HOH . 
E 5 HOH A 129 729 210 HOH HOH . 
E 5 HOH A 130 730 211 HOH HOH . 
E 5 HOH A 131 731 213 HOH HOH . 
E 5 HOH A 132 732 218 HOH HOH . 
E 5 HOH A 133 733 219 HOH HOH . 
E 5 HOH A 134 734 220 HOH HOH . 
E 5 HOH A 135 735 221 HOH HOH . 
E 5 HOH A 136 736 224 HOH HOH . 
E 5 HOH A 137 737 225 HOH HOH . 
E 5 HOH A 138 738 227 HOH HOH . 
E 5 HOH A 139 739 229 HOH HOH . 
E 5 HOH A 140 740 231 HOH HOH . 
E 5 HOH A 141 741 234 HOH HOH . 
E 5 HOH A 142 742 235 HOH HOH . 
E 5 HOH A 143 743 236 HOH HOH . 
E 5 HOH A 144 744 237 HOH HOH . 
E 5 HOH A 145 745 238 HOH HOH . 
E 5 HOH A 146 746 241 HOH HOH . 
E 5 HOH A 147 747 242 HOH HOH . 
E 5 HOH A 148 748 243 HOH HOH . 
E 5 HOH A 149 749 244 HOH HOH . 
E 5 HOH A 150 750 246 HOH HOH . 
E 5 HOH A 151 751 247 HOH HOH . 
E 5 HOH A 152 752 248 HOH HOH . 
E 5 HOH A 153 753 252 HOH HOH . 
E 5 HOH A 154 754 254 HOH HOH . 
E 5 HOH A 155 755 256 HOH HOH . 
E 5 HOH A 156 756 258 HOH HOH . 
E 5 HOH A 157 757 259 HOH HOH . 
E 5 HOH A 158 758 260 HOH HOH . 
E 5 HOH A 159 759 262 HOH HOH . 
E 5 HOH A 160 760 263 HOH HOH . 
E 5 HOH A 161 761 264 HOH HOH . 
E 5 HOH A 162 762 265 HOH HOH . 
E 5 HOH A 163 763 266 HOH HOH . 
E 5 HOH A 164 764 267 HOH HOH . 
E 5 HOH A 165 765 268 HOH HOH . 
E 5 HOH A 166 766 270 HOH HOH . 
E 5 HOH A 167 767 271 HOH HOH . 
E 5 HOH A 168 768 274 HOH HOH . 
E 5 HOH A 169 769 276 HOH HOH . 
E 5 HOH A 170 770 277 HOH HOH . 
E 5 HOH A 171 771 278 HOH HOH . 
E 5 HOH A 172 772 279 HOH HOH . 
E 5 HOH A 173 773 280 HOH HOH . 
E 5 HOH A 174 774 282 HOH HOH . 
E 5 HOH A 175 775 283 HOH HOH . 
E 5 HOH A 176 776 284 HOH HOH . 
E 5 HOH A 177 777 285 HOH HOH . 
E 5 HOH A 178 778 288 HOH HOH . 
E 5 HOH A 179 779 289 HOH HOH . 
E 5 HOH A 180 780 290 HOH HOH . 
E 5 HOH A 181 781 291 HOH HOH . 
E 5 HOH A 182 782 292 HOH HOH . 
E 5 HOH A 183 783 299 HOH HOH . 
E 5 HOH A 184 784 300 HOH HOH . 
E 5 HOH A 185 785 303 HOH HOH . 
E 5 HOH A 186 786 306 HOH HOH . 
E 5 HOH A 187 787 309 HOH HOH . 
E 5 HOH A 188 788 311 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.909 
_atom_site.Cartn_y               46.781 
_atom_site.Cartn_z               29.184 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.8 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           57 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           417 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#