data_4P5F
#
_model_server_result.job_id            7DrRG9vcEhWVrDzPpWvQ9g 
_model_server_result.datetime_utc      '2024-11-29 13:51:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    4P5F 
#
_exptl.entry_id    4P5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P5F 
_cell.length_a            47.999 
_cell.length_b            73.808 
_cell.length_c            201.943 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 35 A ASP 116 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc2 A OD1 ASP 42 A ASP 123 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc3 A OD2 ASP 42 A ASP 123 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc4 A O ILE 151 A ILE 232 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc5 A OD2 ASP 318 A ASP 399 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc6 C CA CA . A CA 501 1_555 G O HOH . A HOH 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc7 C CA CA . A CA 501 1_555 G O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc8 C CA CA . A CA 501 1_555 G O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc9 B OD1 ASP 35 B ASP 116 1_555 D CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc10 B OD1 ASP 42 B ASP 123 1_555 D CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc11 B OD2 ASP 42 B ASP 123 1_555 D CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc12 B O ILE 151 B ILE 232 1_555 D CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc13 B OD2 ASP 318 B ASP 399 1_555 D CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc14 D CA CA . B CA 501 1_555 F O1D AR6 . B AR6 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc15 D CA CA . B CA 501 1_555 F O2D AR6 . B AR6 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc16 D CA CA . B CA 501 1_555 F O3D AR6 . B AR6 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc17 E CA CA . B CA 502 1_555 H O HOH . B HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc18 E CA CA . B CA 502 1_555 H O HOH . B HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4P5F 
_atom_sites.fract_transf_matrix[1][1]    0.020834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 501 1 CA CA . 
D 2 CA B 1 501 1 CA CA . 
E 2 CA B 1 502 1 CA CA . 
F 3 AR6 B 1 503 1 AR6 AR6 . 
G 4 HOH A 1 601 181 HOH HOH . 
G 4 HOH A 2 602 132 HOH HOH . 
G 4 HOH A 3 603 157 HOH HOH . 
G 4 HOH A 4 604 32 HOH HOH . 
G 4 HOH A 5 605 45 HOH HOH . 
G 4 HOH A 6 606 82 HOH HOH . 
G 4 HOH A 7 607 136 HOH HOH . 
G 4 HOH A 8 608 51 HOH HOH . 
G 4 HOH A 9 609 137 HOH HOH . 
G 4 HOH A 10 610 171 HOH HOH . 
G 4 HOH A 11 611 87 HOH HOH . 
G 4 HOH A 12 612 124 HOH HOH . 
G 4 HOH A 13 613 111 HOH HOH . 
G 4 HOH A 14 614 3 HOH HOH . 
G 4 HOH A 15 615 134 HOH HOH . 
G 4 HOH A 16 616 163 HOH HOH . 
G 4 HOH A 17 617 168 HOH HOH . 
G 4 HOH A 18 618 177 HOH HOH . 
G 4 HOH A 19 619 1 HOH HOH . 
G 4 HOH A 20 620 2 HOH HOH . 
G 4 HOH A 21 621 4 HOH HOH . 
G 4 HOH A 22 622 5 HOH HOH . 
G 4 HOH A 23 623 6 HOH HOH . 
G 4 HOH A 24 624 8 HOH HOH . 
G 4 HOH A 25 625 9 HOH HOH . 
G 4 HOH A 26 626 11 HOH HOH . 
G 4 HOH A 27 627 12 HOH HOH . 
G 4 HOH A 28 628 13 HOH HOH . 
G 4 HOH A 29 629 14 HOH HOH . 
G 4 HOH A 30 630 16 HOH HOH . 
G 4 HOH A 31 631 17 HOH HOH . 
G 4 HOH A 32 632 20 HOH HOH . 
G 4 HOH A 33 633 22 HOH HOH . 
G 4 HOH A 34 634 24 HOH HOH . 
G 4 HOH A 35 635 25 HOH HOH . 
G 4 HOH A 36 636 26 HOH HOH . 
G 4 HOH A 37 637 27 HOH HOH . 
G 4 HOH A 38 638 28 HOH HOH . 
G 4 HOH A 39 639 29 HOH HOH . 
G 4 HOH A 40 640 31 HOH HOH . 
G 4 HOH A 41 641 33 HOH HOH . 
G 4 HOH A 42 642 34 HOH HOH . 
G 4 HOH A 43 643 36 HOH HOH . 
G 4 HOH A 44 644 40 HOH HOH . 
G 4 HOH A 45 645 41 HOH HOH . 
G 4 HOH A 46 646 42 HOH HOH . 
G 4 HOH A 47 647 43 HOH HOH . 
G 4 HOH A 48 648 44 HOH HOH . 
G 4 HOH A 49 649 46 HOH HOH . 
G 4 HOH A 50 650 49 HOH HOH . 
G 4 HOH A 51 651 52 HOH HOH . 
G 4 HOH A 52 652 53 HOH HOH . 
G 4 HOH A 53 653 56 HOH HOH . 
G 4 HOH A 54 654 58 HOH HOH . 
G 4 HOH A 55 655 59 HOH HOH . 
G 4 HOH A 56 656 62 HOH HOH . 
G 4 HOH A 57 657 63 HOH HOH . 
G 4 HOH A 58 658 64 HOH HOH . 
G 4 HOH A 59 659 65 HOH HOH . 
G 4 HOH A 60 660 72 HOH HOH . 
G 4 HOH A 61 661 73 HOH HOH . 
G 4 HOH A 62 662 74 HOH HOH . 
G 4 HOH A 63 663 76 HOH HOH . 
G 4 HOH A 64 664 77 HOH HOH . 
G 4 HOH A 65 665 80 HOH HOH . 
G 4 HOH A 66 666 83 HOH HOH . 
G 4 HOH A 67 667 86 HOH HOH . 
G 4 HOH A 68 668 88 HOH HOH . 
G 4 HOH A 69 669 91 HOH HOH . 
G 4 HOH A 70 670 95 HOH HOH . 
G 4 HOH A 71 671 98 HOH HOH . 
G 4 HOH A 72 672 99 HOH HOH . 
G 4 HOH A 73 673 103 HOH HOH . 
G 4 HOH A 74 674 105 HOH HOH . 
G 4 HOH A 75 675 108 HOH HOH . 
G 4 HOH A 76 676 115 HOH HOH . 
G 4 HOH A 77 677 117 HOH HOH . 
G 4 HOH A 78 678 119 HOH HOH . 
G 4 HOH A 79 679 126 HOH HOH . 
G 4 HOH A 80 680 131 HOH HOH . 
G 4 HOH A 81 681 133 HOH HOH . 
G 4 HOH A 82 682 135 HOH HOH . 
G 4 HOH A 83 683 140 HOH HOH . 
G 4 HOH A 84 684 144 HOH HOH . 
G 4 HOH A 85 685 145 HOH HOH . 
G 4 HOH A 86 686 148 HOH HOH . 
G 4 HOH A 87 687 150 HOH HOH . 
G 4 HOH A 88 688 151 HOH HOH . 
G 4 HOH A 89 689 153 HOH HOH . 
G 4 HOH A 90 690 154 HOH HOH . 
G 4 HOH A 91 691 156 HOH HOH . 
G 4 HOH A 92 692 158 HOH HOH . 
G 4 HOH A 93 693 159 HOH HOH . 
G 4 HOH A 94 694 161 HOH HOH . 
G 4 HOH A 95 695 162 HOH HOH . 
G 4 HOH A 96 696 164 HOH HOH . 
G 4 HOH A 97 697 169 HOH HOH . 
G 4 HOH A 98 698 179 HOH HOH . 
G 4 HOH A 99 699 180 HOH HOH . 
G 4 HOH A 100 700 182 HOH HOH . 
G 4 HOH A 101 701 183 HOH HOH . 
G 4 HOH A 102 702 188 HOH HOH . 
H 4 HOH B 1 601 89 HOH HOH . 
H 4 HOH B 2 602 101 HOH HOH . 
H 4 HOH B 3 603 122 HOH HOH . 
H 4 HOH B 4 604 121 HOH HOH . 
H 4 HOH B 5 605 141 HOH HOH . 
H 4 HOH B 6 606 176 HOH HOH . 
H 4 HOH B 7 607 57 HOH HOH . 
H 4 HOH B 8 608 97 HOH HOH . 
H 4 HOH B 9 609 47 HOH HOH . 
H 4 HOH B 10 610 178 HOH HOH . 
H 4 HOH B 11 611 7 HOH HOH . 
H 4 HOH B 12 612 10 HOH HOH . 
H 4 HOH B 13 613 15 HOH HOH . 
H 4 HOH B 14 614 18 HOH HOH . 
H 4 HOH B 15 615 19 HOH HOH . 
H 4 HOH B 16 616 21 HOH HOH . 
H 4 HOH B 17 617 23 HOH HOH . 
H 4 HOH B 18 618 30 HOH HOH . 
H 4 HOH B 19 619 35 HOH HOH . 
H 4 HOH B 20 620 37 HOH HOH . 
H 4 HOH B 21 621 38 HOH HOH . 
H 4 HOH B 22 622 39 HOH HOH . 
H 4 HOH B 23 623 48 HOH HOH . 
H 4 HOH B 24 624 50 HOH HOH . 
H 4 HOH B 25 625 54 HOH HOH . 
H 4 HOH B 26 626 55 HOH HOH . 
H 4 HOH B 27 627 60 HOH HOH . 
H 4 HOH B 28 628 61 HOH HOH . 
H 4 HOH B 29 629 66 HOH HOH . 
H 4 HOH B 30 630 67 HOH HOH . 
H 4 HOH B 31 631 68 HOH HOH . 
H 4 HOH B 32 632 69 HOH HOH . 
H 4 HOH B 33 633 70 HOH HOH . 
H 4 HOH B 34 634 71 HOH HOH . 
H 4 HOH B 35 635 75 HOH HOH . 
H 4 HOH B 36 636 78 HOH HOH . 
H 4 HOH B 37 637 79 HOH HOH . 
H 4 HOH B 38 638 81 HOH HOH . 
H 4 HOH B 39 639 84 HOH HOH . 
H 4 HOH B 40 640 85 HOH HOH . 
H 4 HOH B 41 641 90 HOH HOH . 
H 4 HOH B 42 642 92 HOH HOH . 
H 4 HOH B 43 643 93 HOH HOH . 
H 4 HOH B 44 644 94 HOH HOH . 
H 4 HOH B 45 645 96 HOH HOH . 
H 4 HOH B 46 646 100 HOH HOH . 
H 4 HOH B 47 647 102 HOH HOH . 
H 4 HOH B 48 648 104 HOH HOH . 
H 4 HOH B 49 649 106 HOH HOH . 
H 4 HOH B 50 650 107 HOH HOH . 
H 4 HOH B 51 651 109 HOH HOH . 
H 4 HOH B 52 652 110 HOH HOH . 
H 4 HOH B 53 653 112 HOH HOH . 
H 4 HOH B 54 654 113 HOH HOH . 
H 4 HOH B 55 655 114 HOH HOH . 
H 4 HOH B 56 656 116 HOH HOH . 
H 4 HOH B 57 657 118 HOH HOH . 
H 4 HOH B 58 658 120 HOH HOH . 
H 4 HOH B 59 659 123 HOH HOH . 
H 4 HOH B 60 660 125 HOH HOH . 
H 4 HOH B 61 661 127 HOH HOH . 
H 4 HOH B 62 662 128 HOH HOH . 
H 4 HOH B 63 663 129 HOH HOH . 
H 4 HOH B 64 664 130 HOH HOH . 
H 4 HOH B 65 665 138 HOH HOH . 
H 4 HOH B 66 666 139 HOH HOH . 
H 4 HOH B 67 667 142 HOH HOH . 
H 4 HOH B 68 668 143 HOH HOH . 
H 4 HOH B 69 669 146 HOH HOH . 
H 4 HOH B 70 670 147 HOH HOH . 
H 4 HOH B 71 671 149 HOH HOH . 
H 4 HOH B 72 672 152 HOH HOH . 
H 4 HOH B 73 673 155 HOH HOH . 
H 4 HOH B 74 674 160 HOH HOH . 
H 4 HOH B 75 675 165 HOH HOH . 
H 4 HOH B 76 676 166 HOH HOH . 
H 4 HOH B 77 677 167 HOH HOH . 
H 4 HOH B 78 678 170 HOH HOH . 
H 4 HOH B 79 679 172 HOH HOH . 
H 4 HOH B 80 680 173 HOH HOH . 
H 4 HOH B 81 681 174 HOH HOH . 
H 4 HOH B 82 682 175 HOH HOH . 
H 4 HOH B 83 683 184 HOH HOH . 
H 4 HOH B 84 684 185 HOH HOH . 
H 4 HOH B 85 685 186 HOH HOH . 
H 4 HOH B 86 686 187 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -3.869 
_atom_site.Cartn_y               4.229 
_atom_site.Cartn_z               -42.794 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        10.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           49 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#