data_4P5N # _model_server_result.job_id tSMOgi9LrlkbzcvhOjum7A _model_server_result.datetime_utc '2024-10-28 02:21:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":103}' # _entry.id 4P5N # _exptl.entry_id 4P5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 73.93 _cell.angle_beta 72.85 _cell.angle_gamma 79.46 _cell.entry_id 4P5N _cell.length_a 31.775 _cell.length_b 34.686 _cell.length_c 38.253 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P5N _symmetry.cell_setting . _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 18 A THR 19 1_555 J CD CD . B CD 101 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 A OG1 THR 21 A THR 22 1_555 C CD CD . A CD 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.431 ? metalc ? metalc3 A OD1 ASP 34 A ASP 35 1_555 D CD CD . A CD 102 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.55 ? metalc ? metalc4 A O ILE 35 A ILE 36 1_555 D CD CD . A CD 102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 A OE1 GLU 41 A GLU 42 1_555 D CD CD . A CD 102 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.531 ? metalc ? metalc6 A OE1 GLU 41 A GLU 42 1_555 D CD CD . A CD 102 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A OD1 ASN 49 A ASN 50 1_555 N CD CD . B CD 105 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 A NE2 HIS 65 A HIS 66 1_555 C CD CD . A CD 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 A NE2 HIS 65 A HIS 66 1_555 C CD CD . A CD 101 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.618 ? metalc ? metalc10 A OD1 ASP 74 A ASP 75 1_555 J CD CD . B CD 101 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 A OD2 ASP 74 A ASP 75 1_555 J CD CD . B CD 101 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc12 C CD CD . A CD 101 1_555 R O HOH . A HOH 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 C CD CD . A CD 101 1_555 R O HOH . A HOH 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc14 C CD CD . A CD 101 1_555 R O HOH . A HOH 216 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc15 C CD CD . A CD 101 1_555 R O HOH . A HOH 246 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.498 ? metalc ? metalc16 C CD CD . A CD 101 1_555 R O HOH . A HOH 246 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.179 ? metalc ? metalc17 C CD CD . A CD 101 1_555 R O HOH . A HOH 248 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc18 D CD CD . A CD 102 1_555 R O HOH . A HOH 274 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc19 R O HOH . A HOH 202 1_655 N CD CD . B CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc20 R O HOH . A HOH 217 1_655 M CD CD . B CD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc21 R O HOH . A HOH 219 1_555 M CD CD . B CD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc22 R O HOH . A HOH 220 1_565 J CD CD . B CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc23 R O HOH . A HOH 223 1_655 N CD CD . B CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc24 R O HOH . A HOH 230 1_565 J CD CD . B CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc25 R O HOH . A HOH 240 1_655 M CD CD . B CD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc26 B OG1 THR 18 B THR 19 1_555 N CD CD . B CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc27 B OG1 THR 21 B THR 22 1_555 K CD CD . B CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc28 B OD1 ASP 34 B ASP 35 1_555 L CD CD . B CD 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc29 B OE2 GLU 41 B GLU 42 1_555 L CD CD . B CD 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc30 B OD1 ASN 49 B ASN 50 1_555 J CD CD . B CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc31 B OD1 ASP 62 B ASP 63 1_555 M CD CD . B CD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc32 B OD2 ASP 62 B ASP 63 1_555 M CD CD . B CD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc33 B NE2 HIS 65 B HIS 66 1_555 K CD CD . B CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc34 B OD1 ASP 74 B ASP 75 1_555 N CD CD . B CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc35 K CD CD . B CD 102 1_555 S O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc36 K CD CD . B CD 102 1_555 S O HOH . B HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc37 K CD CD . B CD 102 1_555 S O HOH . B HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc38 K CD CD . B CD 102 1_555 S O HOH . B HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc39 L CD CD . B CD 103 1_555 S O HOH . B HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc40 L CD CD . B CD 103 1_555 S O HOH . B HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc41 M CD CD . B CD 104 1_555 S O HOH . B HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc42 N CD CD . B CD 105 1_555 S O HOH . B HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4P5N _atom_sites.fract_transf_matrix[1][1] 0.031471 _atom_sites.fract_transf_matrix[1][2] -0.005853 _atom_sites.fract_transf_matrix[1][3] -0.008565 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029324 _atom_sites.fract_transf_matrix[2][3] -0.007162 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 101 102 CD CD . D 2 CD A 1 102 103 CD CD . E 3 SO4 A 1 103 104 SO4 SO4 . F 3 SO4 A 1 104 105 SO4 SO4 . G 3 SO4 A 1 105 106 SO4 SO4 . H 3 SO4 A 1 106 107 SO4 SO4 . I 4 GOL A 1 107 108 GOL GOL . J 2 CD B 1 101 101 CD CD . K 2 CD B 1 102 101 CD CD . L 2 CD B 1 103 102 CD CD . M 2 CD B 1 104 103 CD CD . N 2 CD B 1 105 104 CD CD . O 3 SO4 B 1 106 105 SO4 SO4 . P 3 SO4 B 1 107 106 SO4 SO4 . Q 3 SO4 B 1 108 107 SO4 SO4 . R 5 HOH A 1 201 127 HOH HOH . R 5 HOH A 2 202 14 HOH HOH . R 5 HOH A 3 203 62 HOH HOH . R 5 HOH A 4 204 150 HOH HOH . R 5 HOH A 5 205 115 HOH HOH . R 5 HOH A 6 206 35 HOH HOH . R 5 HOH A 7 207 148 HOH HOH . R 5 HOH A 8 208 86 HOH HOH . R 5 HOH A 9 209 105 HOH HOH . R 5 HOH A 10 210 128 HOH HOH . R 5 HOH A 11 211 99 HOH HOH . R 5 HOH A 12 212 140 HOH HOH . R 5 HOH A 13 213 92 HOH HOH . R 5 HOH A 14 214 137 HOH HOH . R 5 HOH A 15 215 53 HOH HOH . R 5 HOH A 16 216 60 HOH HOH . R 5 HOH A 17 217 87 HOH HOH . R 5 HOH A 18 218 120 HOH HOH . R 5 HOH A 19 219 117 HOH HOH . R 5 HOH A 20 220 147 HOH HOH . R 5 HOH A 21 221 51 HOH HOH . R 5 HOH A 22 222 84 HOH HOH . R 5 HOH A 23 223 89 HOH HOH . R 5 HOH A 24 224 110 HOH HOH . R 5 HOH A 25 225 136 HOH HOH . R 5 HOH A 26 226 112 HOH HOH . R 5 HOH A 27 227 135 HOH HOH . R 5 HOH A 28 228 102 HOH HOH . R 5 HOH A 29 229 155 HOH HOH . R 5 HOH A 30 230 146 HOH HOH . R 5 HOH A 31 231 77 HOH HOH . R 5 HOH A 32 232 121 HOH HOH . R 5 HOH A 33 233 24 HOH HOH . R 5 HOH A 34 234 122 HOH HOH . R 5 HOH A 35 235 130 HOH HOH . R 5 HOH A 36 236 113 HOH HOH . R 5 HOH A 37 237 91 HOH HOH . R 5 HOH A 38 238 81 HOH HOH . R 5 HOH A 39 239 103 HOH HOH . R 5 HOH A 40 240 68 HOH HOH . R 5 HOH A 41 241 65 HOH HOH . R 5 HOH A 42 242 47 HOH HOH . R 5 HOH A 43 243 63 HOH HOH . R 5 HOH A 44 244 40 HOH HOH . R 5 HOH A 45 245 41 HOH HOH . R 5 HOH A 46 246 61 HOH HOH . R 5 HOH A 47 247 64 HOH HOH . R 5 HOH A 48 248 67 HOH HOH . R 5 HOH A 49 249 69 HOH HOH . R 5 HOH A 50 250 82 HOH HOH . R 5 HOH A 51 251 85 HOH HOH . R 5 HOH A 52 252 88 HOH HOH . R 5 HOH A 53 253 93 HOH HOH . R 5 HOH A 54 254 94 HOH HOH . R 5 HOH A 55 255 95 HOH HOH . R 5 HOH A 56 256 96 HOH HOH . R 5 HOH A 57 257 97 HOH HOH . R 5 HOH A 58 258 98 HOH HOH . R 5 HOH A 59 259 100 HOH HOH . R 5 HOH A 60 260 106 HOH HOH . R 5 HOH A 61 261 107 HOH HOH . R 5 HOH A 62 262 108 HOH HOH . R 5 HOH A 63 263 109 HOH HOH . R 5 HOH A 64 264 111 HOH HOH . R 5 HOH A 65 265 116 HOH HOH . R 5 HOH A 66 266 118 HOH HOH . R 5 HOH A 67 267 119 HOH HOH . R 5 HOH A 68 268 123 HOH HOH . R 5 HOH A 69 269 124 HOH HOH . R 5 HOH A 70 270 125 HOH HOH . R 5 HOH A 71 271 133 HOH HOH . R 5 HOH A 72 272 134 HOH HOH . R 5 HOH A 73 273 139 HOH HOH . R 5 HOH A 74 274 143 HOH HOH . R 5 HOH A 75 275 149 HOH HOH . R 5 HOH A 76 276 151 HOH HOH . S 5 HOH B 1 201 114 HOH HOH . S 5 HOH B 2 202 5 HOH HOH . S 5 HOH B 3 203 1 HOH HOH . S 5 HOH B 4 204 6 HOH HOH . S 5 HOH B 5 205 55 HOH HOH . S 5 HOH B 6 206 15 HOH HOH . S 5 HOH B 7 207 49 HOH HOH . S 5 HOH B 8 208 101 HOH HOH . S 5 HOH B 9 209 22 HOH HOH . S 5 HOH B 10 210 11 HOH HOH . S 5 HOH B 11 211 71 HOH HOH . S 5 HOH B 12 212 42 HOH HOH . S 5 HOH B 13 213 52 HOH HOH . S 5 HOH B 14 214 48 HOH HOH . S 5 HOH B 15 215 126 HOH HOH . S 5 HOH B 16 216 72 HOH HOH . S 5 HOH B 17 217 26 HOH HOH . S 5 HOH B 18 218 73 HOH HOH . S 5 HOH B 19 219 21 HOH HOH . S 5 HOH B 20 220 23 HOH HOH . S 5 HOH B 21 221 39 HOH HOH . S 5 HOH B 22 222 56 HOH HOH . S 5 HOH B 23 223 54 HOH HOH . S 5 HOH B 24 224 13 HOH HOH . S 5 HOH B 25 225 131 HOH HOH . S 5 HOH B 26 226 28 HOH HOH . S 5 HOH B 27 227 46 HOH HOH . S 5 HOH B 28 228 74 HOH HOH . S 5 HOH B 29 229 31 HOH HOH . S 5 HOH B 30 230 10 HOH HOH . S 5 HOH B 31 231 153 HOH HOH . S 5 HOH B 32 232 104 HOH HOH . S 5 HOH B 33 233 141 HOH HOH . S 5 HOH B 34 234 17 HOH HOH . S 5 HOH B 35 235 7 HOH HOH . S 5 HOH B 36 236 45 HOH HOH . S 5 HOH B 37 237 50 HOH HOH . S 5 HOH B 38 238 59 HOH HOH . S 5 HOH B 39 239 36 HOH HOH . S 5 HOH B 40 240 138 HOH HOH . S 5 HOH B 41 241 145 HOH HOH . S 5 HOH B 42 242 27 HOH HOH . S 5 HOH B 43 243 66 HOH HOH . S 5 HOH B 44 244 152 HOH HOH . S 5 HOH B 45 245 83 HOH HOH . S 5 HOH B 46 246 29 HOH HOH . S 5 HOH B 47 247 2 HOH HOH . S 5 HOH B 48 248 3 HOH HOH . S 5 HOH B 49 249 4 HOH HOH . S 5 HOH B 50 250 8 HOH HOH . S 5 HOH B 51 251 9 HOH HOH . S 5 HOH B 52 252 12 HOH HOH . S 5 HOH B 53 253 16 HOH HOH . S 5 HOH B 54 254 18 HOH HOH . S 5 HOH B 55 255 19 HOH HOH . S 5 HOH B 56 256 20 HOH HOH . S 5 HOH B 57 257 25 HOH HOH . S 5 HOH B 58 258 30 HOH HOH . S 5 HOH B 59 259 32 HOH HOH . S 5 HOH B 60 260 33 HOH HOH . S 5 HOH B 61 261 34 HOH HOH . S 5 HOH B 62 262 37 HOH HOH . S 5 HOH B 63 263 38 HOH HOH . S 5 HOH B 64 264 43 HOH HOH . S 5 HOH B 65 265 44 HOH HOH . S 5 HOH B 66 266 57 HOH HOH . S 5 HOH B 67 267 58 HOH HOH . S 5 HOH B 68 268 70 HOH HOH . S 5 HOH B 69 269 75 HOH HOH . S 5 HOH B 70 270 76 HOH HOH . S 5 HOH B 71 271 78 HOH HOH . S 5 HOH B 72 272 79 HOH HOH . S 5 HOH B 73 273 80 HOH HOH . S 5 HOH B 74 274 90 HOH HOH . S 5 HOH B 75 275 129 HOH HOH . S 5 HOH B 76 276 132 HOH HOH . S 5 HOH B 77 277 142 HOH HOH . S 5 HOH B 78 278 144 HOH HOH . S 5 HOH B 79 279 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x 38.49 _atom_site.Cartn_y 39.136 _atom_site.Cartn_z 18.317 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 18.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 103 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #