data_4P5R # _model_server_result.job_id 8so0qWAxEj4hVU60mfHZ8w _model_server_result.datetime_utc '2024-10-18 23:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4P5R # _exptl.entry_id 4P5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.89 _cell.angle_gamma 90 _cell.entry_id 4P5R _cell.length_a 27.147 _cell.length_b 56.146 _cell.length_c 28.688 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 32 A THR 32 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc2 A ND1 HIS 53 A HIS 53 1_555 B CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc3 A OH TYR 90 A TYR 90 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc4 A SG CYS 92 A CYS 92 1_555 B CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 A ND1 HIS 95 A HIS 95 1_555 B CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 A O LYS 101 A LYS 101 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4P5R _atom_sites.fract_transf_matrix[1][1] 0.036836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 201 307 CU CU . C 3 NA A 1 202 308 NA NA . D 4 HOH A 1 301 118 HOH HOH . D 4 HOH A 2 302 100 HOH HOH . D 4 HOH A 3 303 131 HOH HOH . D 4 HOH A 4 304 86 HOH HOH . D 4 HOH A 5 305 79 HOH HOH . D 4 HOH A 6 306 18 HOH HOH . D 4 HOH A 7 307 165 HOH HOH . D 4 HOH A 8 308 99 HOH HOH . D 4 HOH A 9 309 152 HOH HOH . D 4 HOH A 10 310 170 HOH HOH . D 4 HOH A 11 311 114 HOH HOH . D 4 HOH A 12 312 92 HOH HOH . D 4 HOH A 13 313 116 HOH HOH . D 4 HOH A 14 314 110 HOH HOH . D 4 HOH A 15 315 28 HOH HOH . D 4 HOH A 16 316 9 HOH HOH . D 4 HOH A 17 317 35 HOH HOH . D 4 HOH A 18 318 105 HOH HOH . D 4 HOH A 19 319 44 HOH HOH . D 4 HOH A 20 320 129 HOH HOH . D 4 HOH A 21 321 134 HOH HOH . D 4 HOH A 22 322 70 HOH HOH . D 4 HOH A 23 323 10 HOH HOH . D 4 HOH A 24 324 26 HOH HOH . D 4 HOH A 25 325 3 HOH HOH . D 4 HOH A 26 326 11 HOH HOH . D 4 HOH A 27 327 43 HOH HOH . D 4 HOH A 28 328 7 HOH HOH . D 4 HOH A 29 329 104 HOH HOH . D 4 HOH A 30 330 14 HOH HOH . D 4 HOH A 31 331 33 HOH HOH . D 4 HOH A 32 332 51 HOH HOH . D 4 HOH A 33 333 22 HOH HOH . D 4 HOH A 34 334 95 HOH HOH . D 4 HOH A 35 335 27 HOH HOH . D 4 HOH A 36 336 2 HOH HOH . D 4 HOH A 37 337 140 HOH HOH . D 4 HOH A 38 338 58 HOH HOH . D 4 HOH A 39 339 101 HOH HOH . D 4 HOH A 40 340 119 HOH HOH . D 4 HOH A 41 341 54 HOH HOH . D 4 HOH A 42 342 145 HOH HOH . D 4 HOH A 43 343 167 HOH HOH . D 4 HOH A 44 344 72 HOH HOH . D 4 HOH A 45 345 32 HOH HOH . D 4 HOH A 46 346 16 HOH HOH . D 4 HOH A 47 347 62 HOH HOH . D 4 HOH A 48 348 38 HOH HOH . D 4 HOH A 49 349 136 HOH HOH . D 4 HOH A 50 350 23 HOH HOH . D 4 HOH A 51 351 31 HOH HOH . D 4 HOH A 52 352 106 HOH HOH . D 4 HOH A 53 353 53 HOH HOH . D 4 HOH A 54 354 49 HOH HOH . D 4 HOH A 55 355 17 HOH HOH . D 4 HOH A 56 356 8 HOH HOH . D 4 HOH A 57 357 78 HOH HOH . D 4 HOH A 58 358 20 HOH HOH . D 4 HOH A 59 359 66 HOH HOH . D 4 HOH A 60 360 84 HOH HOH . D 4 HOH A 61 361 34 HOH HOH . D 4 HOH A 62 362 120 HOH HOH . D 4 HOH A 63 363 21 HOH HOH . D 4 HOH A 64 364 151 HOH HOH . D 4 HOH A 65 365 75 HOH HOH . D 4 HOH A 66 366 19 HOH HOH . D 4 HOH A 67 367 61 HOH HOH . D 4 HOH A 68 368 142 HOH HOH . D 4 HOH A 69 369 94 HOH HOH . D 4 HOH A 70 370 25 HOH HOH . D 4 HOH A 71 371 81 HOH HOH . D 4 HOH A 72 372 46 HOH HOH . D 4 HOH A 73 373 123 HOH HOH . D 4 HOH A 74 374 161 HOH HOH . D 4 HOH A 75 375 166 HOH HOH . D 4 HOH A 76 376 63 HOH HOH . D 4 HOH A 77 377 52 HOH HOH . D 4 HOH A 78 378 45 HOH HOH . D 4 HOH A 79 379 85 HOH HOH . D 4 HOH A 80 380 162 HOH HOH . D 4 HOH A 81 381 139 HOH HOH . D 4 HOH A 82 382 96 HOH HOH . D 4 HOH A 83 383 98 HOH HOH . D 4 HOH A 84 384 74 HOH HOH . D 4 HOH A 85 385 39 HOH HOH . D 4 HOH A 86 386 108 HOH HOH . D 4 HOH A 87 387 147 HOH HOH . D 4 HOH A 88 388 146 HOH HOH . D 4 HOH A 89 389 130 HOH HOH . D 4 HOH A 90 390 137 HOH HOH . D 4 HOH A 91 391 82 HOH HOH . D 4 HOH A 92 392 168 HOH HOH . D 4 HOH A 93 393 164 HOH HOH . D 4 HOH A 94 394 122 HOH HOH . D 4 HOH A 95 395 103 HOH HOH . D 4 HOH A 96 396 67 HOH HOH . D 4 HOH A 97 397 59 HOH HOH . D 4 HOH A 98 398 149 HOH HOH . D 4 HOH A 99 399 65 HOH HOH . D 4 HOH A 100 400 102 HOH HOH . D 4 HOH A 101 401 156 HOH HOH . D 4 HOH A 102 402 150 HOH HOH . D 4 HOH A 103 403 112 HOH HOH . D 4 HOH A 104 404 126 HOH HOH . D 4 HOH A 105 405 117 HOH HOH . D 4 HOH A 106 406 121 HOH HOH . D 4 HOH A 107 407 73 HOH HOH . D 4 HOH A 108 408 24 HOH HOH . D 4 HOH A 109 409 141 HOH HOH . D 4 HOH A 110 410 15 HOH HOH . D 4 HOH A 111 411 153 HOH HOH . D 4 HOH A 112 412 158 HOH HOH . D 4 HOH A 113 413 57 HOH HOH . D 4 HOH A 114 414 90 HOH HOH . D 4 HOH A 115 415 87 HOH HOH . D 4 HOH A 116 416 144 HOH HOH . D 4 HOH A 117 417 148 HOH HOH . D 4 HOH A 118 418 80 HOH HOH . D 4 HOH A 119 419 68 HOH HOH . D 4 HOH A 120 420 91 HOH HOH . D 4 HOH A 121 421 111 HOH HOH . D 4 HOH A 122 422 160 HOH HOH . D 4 HOH A 123 423 1 HOH HOH . D 4 HOH A 124 424 4 HOH HOH . D 4 HOH A 125 425 5 HOH HOH . D 4 HOH A 126 426 6 HOH HOH . D 4 HOH A 127 427 12 HOH HOH . D 4 HOH A 128 428 13 HOH HOH . D 4 HOH A 129 429 29 HOH HOH . D 4 HOH A 130 430 30 HOH HOH . D 4 HOH A 131 431 36 HOH HOH . D 4 HOH A 132 432 37 HOH HOH . D 4 HOH A 133 433 40 HOH HOH . D 4 HOH A 134 434 41 HOH HOH . D 4 HOH A 135 435 42 HOH HOH . D 4 HOH A 136 436 47 HOH HOH . D 4 HOH A 137 437 48 HOH HOH . D 4 HOH A 138 438 50 HOH HOH . D 4 HOH A 139 439 55 HOH HOH . D 4 HOH A 140 440 56 HOH HOH . D 4 HOH A 141 441 60 HOH HOH . D 4 HOH A 142 442 64 HOH HOH . D 4 HOH A 143 443 69 HOH HOH . D 4 HOH A 144 444 71 HOH HOH . D 4 HOH A 145 445 76 HOH HOH . D 4 HOH A 146 446 77 HOH HOH . D 4 HOH A 147 447 83 HOH HOH . D 4 HOH A 148 448 88 HOH HOH . D 4 HOH A 149 449 89 HOH HOH . D 4 HOH A 150 450 93 HOH HOH . D 4 HOH A 151 451 97 HOH HOH . D 4 HOH A 152 452 107 HOH HOH . D 4 HOH A 153 453 109 HOH HOH . D 4 HOH A 154 454 113 HOH HOH . D 4 HOH A 155 455 115 HOH HOH . D 4 HOH A 156 456 124 HOH HOH . D 4 HOH A 157 457 125 HOH HOH . D 4 HOH A 158 458 127 HOH HOH . D 4 HOH A 159 459 128 HOH HOH . D 4 HOH A 160 460 132 HOH HOH . D 4 HOH A 161 461 133 HOH HOH . D 4 HOH A 162 462 135 HOH HOH . D 4 HOH A 163 463 138 HOH HOH . D 4 HOH A 164 464 143 HOH HOH . D 4 HOH A 165 465 154 HOH HOH . D 4 HOH A 166 466 155 HOH HOH . D 4 HOH A 167 467 157 HOH HOH . D 4 HOH A 168 468 159 HOH HOH . D 4 HOH A 169 469 163 HOH HOH . D 4 HOH A 170 470 169 HOH HOH . D 4 HOH A 171 471 171 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 2.086 _atom_site.Cartn_y 11.673 _atom_site.Cartn_z 31.101 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #