data_4P66 # _model_server_result.job_id sgCFnhN1DKP-0DAKHpausg _model_server_result.datetime_utc '2024-10-19 17:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4P66 # _exptl.entry_id 4P66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P66 _cell.length_a 34.411 _cell.length_b 44.861 _cell.length_c 98.428 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P66 _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 45 A HIS 45 1_555 A N XCN 46 A XCN 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale2 A C XCN 46 A XCN 46 1_555 A N TRP 47 A TRP 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? metalc ? metalc1 A O ASP 116 A ASP 116 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OXT ARG 159 A ARG 159 1_555 D CA CA . A CA 203 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc3 D CA CA . A CA 203 1_555 F O HOH . A HOH 301 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 D CA CA . A CA 203 1_555 F O HOH . A HOH 315 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 D CA CA . A CA 203 1_555 F O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 D CA CA . A CA 203 1_555 F O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc7 E CA CA . A CA 204 1_555 F O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 E CA CA . A CA 204 1_555 F O HOH . A HOH 313 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 E CA CA . A CA 204 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 4P66 _atom_sites.fract_transf_matrix[1][1] 0.02906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 201 161 MTX MTX . C 3 NAP A 1 202 164 NAP NAP . D 4 CA A 1 203 1 CA CA . E 4 CA A 1 204 1 CA CA . F 5 HOH A 1 301 54 HOH HOH . F 5 HOH A 2 302 31 HOH HOH . F 5 HOH A 3 303 86 HOH HOH . F 5 HOH A 4 304 3 HOH HOH . F 5 HOH A 5 305 80 HOH HOH . F 5 HOH A 6 306 2 HOH HOH . F 5 HOH A 7 307 35 HOH HOH . F 5 HOH A 8 308 11 HOH HOH . F 5 HOH A 9 309 42 HOH HOH . F 5 HOH A 10 310 50 HOH HOH . F 5 HOH A 11 311 33 HOH HOH . F 5 HOH A 12 312 88 HOH HOH . F 5 HOH A 13 313 45 HOH HOH . F 5 HOH A 14 314 85 HOH HOH . F 5 HOH A 15 315 52 HOH HOH . F 5 HOH A 16 316 65 HOH HOH . F 5 HOH A 17 317 57 HOH HOH . F 5 HOH A 18 318 56 HOH HOH . F 5 HOH A 19 319 49 HOH HOH . F 5 HOH A 20 320 51 HOH HOH . F 5 HOH A 21 321 70 HOH HOH . F 5 HOH A 22 322 46 HOH HOH . F 5 HOH A 23 323 30 HOH HOH . F 5 HOH A 24 324 75 HOH HOH . F 5 HOH A 25 325 74 HOH HOH . F 5 HOH A 26 326 91 HOH HOH . F 5 HOH A 27 327 66 HOH HOH . F 5 HOH A 28 328 82 HOH HOH . F 5 HOH A 29 329 41 HOH HOH . F 5 HOH A 30 330 59 HOH HOH . F 5 HOH A 31 331 32 HOH HOH . F 5 HOH A 32 332 1 HOH HOH . F 5 HOH A 33 333 55 HOH HOH . F 5 HOH A 34 334 15 HOH HOH . F 5 HOH A 35 335 48 HOH HOH . F 5 HOH A 36 336 13 HOH HOH . F 5 HOH A 37 337 53 HOH HOH . F 5 HOH A 38 338 44 HOH HOH . F 5 HOH A 39 339 77 HOH HOH . F 5 HOH A 40 340 63 HOH HOH . F 5 HOH A 41 341 78 HOH HOH . F 5 HOH A 42 342 81 HOH HOH . F 5 HOH A 43 343 4 HOH HOH . F 5 HOH A 44 344 5 HOH HOH . F 5 HOH A 45 345 6 HOH HOH . F 5 HOH A 46 346 7 HOH HOH . F 5 HOH A 47 347 8 HOH HOH . F 5 HOH A 48 348 9 HOH HOH . F 5 HOH A 49 349 10 HOH HOH . F 5 HOH A 50 350 14 HOH HOH . F 5 HOH A 51 351 16 HOH HOH . F 5 HOH A 52 352 17 HOH HOH . F 5 HOH A 53 353 18 HOH HOH . F 5 HOH A 54 354 19 HOH HOH . F 5 HOH A 55 355 20 HOH HOH . F 5 HOH A 56 356 22 HOH HOH . F 5 HOH A 57 357 23 HOH HOH . F 5 HOH A 58 358 24 HOH HOH . F 5 HOH A 59 359 25 HOH HOH . F 5 HOH A 60 360 27 HOH HOH . F 5 HOH A 61 361 28 HOH HOH . F 5 HOH A 62 362 29 HOH HOH . F 5 HOH A 63 363 36 HOH HOH . F 5 HOH A 64 364 37 HOH HOH . F 5 HOH A 65 365 38 HOH HOH . F 5 HOH A 66 366 39 HOH HOH . F 5 HOH A 67 367 40 HOH HOH . F 5 HOH A 68 368 43 HOH HOH . F 5 HOH A 69 369 47 HOH HOH . F 5 HOH A 70 370 58 HOH HOH . F 5 HOH A 71 371 60 HOH HOH . F 5 HOH A 72 372 61 HOH HOH . F 5 HOH A 73 373 62 HOH HOH . F 5 HOH A 74 374 64 HOH HOH . F 5 HOH A 75 375 67 HOH HOH . F 5 HOH A 76 376 68 HOH HOH . F 5 HOH A 77 377 69 HOH HOH . F 5 HOH A 78 378 71 HOH HOH . F 5 HOH A 79 379 72 HOH HOH . F 5 HOH A 80 380 73 HOH HOH . F 5 HOH A 81 381 76 HOH HOH . F 5 HOH A 82 382 79 HOH HOH . F 5 HOH A 83 383 83 HOH HOH . F 5 HOH A 84 384 84 HOH HOH . F 5 HOH A 85 385 87 HOH HOH . F 5 HOH A 86 386 89 HOH HOH . F 5 HOH A 87 387 90 HOH HOH . F 5 HOH A 88 388 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 -2.026 -5.035 11.664 1 13.05 ? N1 MTX 201 A 1 HETATM 2 C C2 MTX . . . B 2 -3.241 -5.257 12.193 1 14.36 ? C2 MTX 201 A 1 HETATM 3 N NA2 MTX . . . B 2 -3.54 -6.504 12.57 1 10.55 ? NA2 MTX 201 A 1 HETATM 4 N N3 MTX . . . B 2 -4.139 -4.237 12.296 1 13.41 ? N3 MTX 201 A 1 HETATM 5 C C4 MTX . . . B 2 -3.824 -2.994 11.87 1 13.88 ? C4 MTX 201 A 1 HETATM 6 N NA4 MTX . . . B 2 -4.639 -1.93 11.972 1 11.85 ? NA4 MTX 201 A 1 HETATM 7 C C4A MTX . . . B 2 -2.563 -2.749 11.316 1 15.46 ? C4A MTX 201 A 1 HETATM 8 N N5 MTX . . . B 2 -2.239 -1.515 10.872 1 16.86 ? N5 MTX 201 A 1 HETATM 9 C C6 MTX . . . B 2 -1.008 -1.229 10.336 1 19.91 ? C6 MTX 201 A 1 HETATM 10 C C7 MTX . . . B 2 -0.088 -2.291 10.226 1 20.25 ? C7 MTX 201 A 1 HETATM 11 N N8 MTX . . . B 2 -0.423 -3.606 10.69 1 18.46 ? N8 MTX 201 A 1 HETATM 12 C C8A MTX . . . B 2 -1.659 -3.812 11.222 1 16.42 ? C8A MTX 201 A 1 HETATM 13 C C9 MTX . . . B 2 -0.732 0.124 9.902 1 21.32 ? C9 MTX 201 A 1 HETATM 14 N N10 MTX . . . B 2 0.459 0.232 9.01 1 22.82 ? N10 MTX 201 A 1 HETATM 15 C CM MTX . . . B 2 1.613 0.996 9.54 1 21.97 ? CM MTX 201 A 1 HETATM 16 C C11 MTX . . . B 2 0.66 -1.603 5.22 1 30.03 ? C11 MTX 201 A 1 HETATM 17 C C12 MTX . . . B 2 1.78 -1.008 5.791 1 28.67 ? C12 MTX 201 A 1 HETATM 18 C C13 MTX . . . B 2 1.733 -0.394 7.037 1 26.95 ? C13 MTX 201 A 1 HETATM 19 C C14 MTX . . . B 2 0.545 -0.335 7.776 1 23.68 ? C14 MTX 201 A 1 HETATM 20 C C15 MTX . . . B 2 -0.569 -0.935 7.188 1 25.57 ? C15 MTX 201 A 1 HETATM 21 C C16 MTX . . . B 2 -0.521 -1.547 5.947 1 27.65 ? C16 MTX 201 A 1 HETATM 22 C C MTX . . . B 2 0.707 -2.223 3.958 1 30.93 ? C MTX 201 A 1 HETATM 23 O O MTX . . . B 2 1.601 -1.962 3.145 1 31.85 ? O MTX 201 A 1 HETATM 24 N N MTX . . . B 2 -0.268 -3.126 3.709 1 31.47 ? N MTX 201 A 1 HETATM 25 C CA MTX . . . B 2 -0.417 -3.806 2.421 1 32.17 ? CA MTX 201 A 1 HETATM 26 C CT MTX . . . B 2 -1.942 -4.018 2.179 1 31.4 ? CT MTX 201 A 1 HETATM 27 O O1 MTX . . . B 2 -2.714 -3.951 3.166 1 29.27 ? O1 MTX 201 A 1 HETATM 28 O O2 MTX . . . B 2 -2.315 -4.189 0.999 1 29.27 ? O2 MTX 201 A 1 HETATM 29 C CB MTX . . . B 2 0.388 -5.129 2.432 1 33.26 ? CB MTX 201 A 1 HETATM 30 C CG MTX . . . B 2 1.194 -5.133 1.118 1 37.7 ? CG MTX 201 A 1 HETATM 31 C CD MTX . . . B 2 2.643 -5.364 1.465 1 42.68 ? CD MTX 201 A 1 HETATM 32 O OE1 MTX . . . B 2 3.439 -4.41 1.243 1 44.82 ? OE1 MTX 201 A 1 HETATM 33 O OE2 MTX . . . B 2 2.939 -6.49 1.934 1 47.63 ? OE2 MTX 201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #