data_4P66 # _model_server_result.job_id Uzl3AuEjoAC7NMSWbpC2QA _model_server_result.datetime_utc '2024-10-19 17:35:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4P66 # _exptl.entry_id 4P66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P66 _cell.length_a 34.411 _cell.length_b 44.861 _cell.length_c 98.428 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P66 _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 45 A HIS 45 1_555 A N XCN 46 A XCN 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale2 A C XCN 46 A XCN 46 1_555 A N TRP 47 A TRP 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? metalc ? metalc1 A O ASP 116 A ASP 116 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OXT ARG 159 A ARG 159 1_555 D CA CA . A CA 203 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc3 D CA CA . A CA 203 1_555 F O HOH . A HOH 301 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 D CA CA . A CA 203 1_555 F O HOH . A HOH 315 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 D CA CA . A CA 203 1_555 F O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 D CA CA . A CA 203 1_555 F O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc7 E CA CA . A CA 204 1_555 F O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 E CA CA . A CA 204 1_555 F O HOH . A HOH 313 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 E CA CA . A CA 204 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 294 n n PA O2A NAP sing 295 n n PA O5B NAP sing 296 n n PA O3 NAP sing 297 n n O2A HOA2 NAP sing 298 n n O5B C5B NAP sing 299 n n C5B C4B NAP sing 300 n n C5B H51A NAP sing 301 n n C5B H52A NAP sing 302 n n C4B O4B NAP sing 303 n n C4B C3B NAP sing 304 n n C4B H4B NAP sing 305 n n O4B C1B NAP sing 306 n n C3B O3B NAP sing 307 n n C3B C2B NAP sing 308 n n C3B H3B NAP sing 309 n n O3B HO3A NAP sing 310 n n C2B O2B NAP sing 311 n n C2B C1B NAP sing 312 n n C2B H2B NAP sing 313 n n O2B P2B NAP sing 314 n n C1B N9A NAP sing 315 n n C1B H1B NAP sing 316 n n N9A C8A NAP sing 317 n y N9A C4A NAP sing 318 n y C8A N7A NAP doub 319 n y C8A H8A NAP sing 320 n n N7A C5A NAP sing 321 n y C5A C6A NAP sing 322 n y C5A C4A NAP doub 323 n y C6A N6A NAP sing 324 n n C6A N1A NAP doub 325 n y N6A H61A NAP sing 326 n n N6A H62A NAP sing 327 n n N1A C2A NAP sing 328 n y C2A N3A NAP doub 329 n y C2A H2A NAP sing 330 n n N3A C4A NAP sing 331 n y O3 PN NAP sing 332 n n PN O1N NAP doub 333 n n PN O2N NAP sing 334 n n PN O5D NAP sing 335 n n O5D C5D NAP sing 336 n n C5D C4D NAP sing 337 n n C5D H51N NAP sing 338 n n C5D H52N NAP sing 339 n n C4D O4D NAP sing 340 n n C4D C3D NAP sing 341 n n C4D H4D NAP sing 342 n n O4D C1D NAP sing 343 n n C3D O3D NAP sing 344 n n C3D C2D NAP sing 345 n n C3D H3D NAP sing 346 n n O3D HO3N NAP sing 347 n n C2D O2D NAP sing 348 n n C2D C1D NAP sing 349 n n C2D H2D NAP sing 350 n n O2D HO2N NAP sing 351 n n C1D N1N NAP sing 352 n n C1D H1D NAP sing 353 n n N1N C2N NAP sing 354 n y N1N C6N NAP doub 355 n y C2N C3N NAP doub 356 n y C2N H2N NAP sing 357 n n C3N C7N NAP sing 358 n n C3N C4N NAP sing 359 n y C7N O7N NAP doub 360 n n C7N N7N NAP sing 361 n n N7N H71N NAP sing 362 n n N7N H72N NAP sing 363 n n C4N C5N NAP doub 364 n y C4N H4N NAP sing 365 n n C5N C6N NAP sing 366 n y C5N H5N NAP sing 367 n n C6N H6N NAP sing 368 n n P2B O1X NAP doub 369 n n P2B O2X NAP sing 370 n n P2B O3X NAP sing 371 n n O2X HOP2 NAP sing 372 n n O3X HOP3 NAP sing 373 n n # _atom_sites.entry_id 4P66 _atom_sites.fract_transf_matrix[1][1] 0.02906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 201 161 MTX MTX . C 3 NAP A 1 202 164 NAP NAP . D 4 CA A 1 203 1 CA CA . E 4 CA A 1 204 1 CA CA . F 5 HOH A 1 301 54 HOH HOH . F 5 HOH A 2 302 31 HOH HOH . F 5 HOH A 3 303 86 HOH HOH . F 5 HOH A 4 304 3 HOH HOH . F 5 HOH A 5 305 80 HOH HOH . F 5 HOH A 6 306 2 HOH HOH . F 5 HOH A 7 307 35 HOH HOH . F 5 HOH A 8 308 11 HOH HOH . F 5 HOH A 9 309 42 HOH HOH . F 5 HOH A 10 310 50 HOH HOH . F 5 HOH A 11 311 33 HOH HOH . F 5 HOH A 12 312 88 HOH HOH . F 5 HOH A 13 313 45 HOH HOH . F 5 HOH A 14 314 85 HOH HOH . F 5 HOH A 15 315 52 HOH HOH . F 5 HOH A 16 316 65 HOH HOH . F 5 HOH A 17 317 57 HOH HOH . F 5 HOH A 18 318 56 HOH HOH . F 5 HOH A 19 319 49 HOH HOH . F 5 HOH A 20 320 51 HOH HOH . F 5 HOH A 21 321 70 HOH HOH . F 5 HOH A 22 322 46 HOH HOH . F 5 HOH A 23 323 30 HOH HOH . F 5 HOH A 24 324 75 HOH HOH . F 5 HOH A 25 325 74 HOH HOH . F 5 HOH A 26 326 91 HOH HOH . F 5 HOH A 27 327 66 HOH HOH . F 5 HOH A 28 328 82 HOH HOH . F 5 HOH A 29 329 41 HOH HOH . F 5 HOH A 30 330 59 HOH HOH . F 5 HOH A 31 331 32 HOH HOH . F 5 HOH A 32 332 1 HOH HOH . F 5 HOH A 33 333 55 HOH HOH . F 5 HOH A 34 334 15 HOH HOH . F 5 HOH A 35 335 48 HOH HOH . F 5 HOH A 36 336 13 HOH HOH . F 5 HOH A 37 337 53 HOH HOH . F 5 HOH A 38 338 44 HOH HOH . F 5 HOH A 39 339 77 HOH HOH . F 5 HOH A 40 340 63 HOH HOH . F 5 HOH A 41 341 78 HOH HOH . F 5 HOH A 42 342 81 HOH HOH . F 5 HOH A 43 343 4 HOH HOH . F 5 HOH A 44 344 5 HOH HOH . F 5 HOH A 45 345 6 HOH HOH . F 5 HOH A 46 346 7 HOH HOH . F 5 HOH A 47 347 8 HOH HOH . F 5 HOH A 48 348 9 HOH HOH . F 5 HOH A 49 349 10 HOH HOH . F 5 HOH A 50 350 14 HOH HOH . F 5 HOH A 51 351 16 HOH HOH . F 5 HOH A 52 352 17 HOH HOH . F 5 HOH A 53 353 18 HOH HOH . F 5 HOH A 54 354 19 HOH HOH . F 5 HOH A 55 355 20 HOH HOH . F 5 HOH A 56 356 22 HOH HOH . F 5 HOH A 57 357 23 HOH HOH . F 5 HOH A 58 358 24 HOH HOH . F 5 HOH A 59 359 25 HOH HOH . F 5 HOH A 60 360 27 HOH HOH . F 5 HOH A 61 361 28 HOH HOH . F 5 HOH A 62 362 29 HOH HOH . F 5 HOH A 63 363 36 HOH HOH . F 5 HOH A 64 364 37 HOH HOH . F 5 HOH A 65 365 38 HOH HOH . F 5 HOH A 66 366 39 HOH HOH . F 5 HOH A 67 367 40 HOH HOH . F 5 HOH A 68 368 43 HOH HOH . F 5 HOH A 69 369 47 HOH HOH . F 5 HOH A 70 370 58 HOH HOH . F 5 HOH A 71 371 60 HOH HOH . F 5 HOH A 72 372 61 HOH HOH . F 5 HOH A 73 373 62 HOH HOH . F 5 HOH A 74 374 64 HOH HOH . F 5 HOH A 75 375 67 HOH HOH . F 5 HOH A 76 376 68 HOH HOH . F 5 HOH A 77 377 69 HOH HOH . F 5 HOH A 78 378 71 HOH HOH . F 5 HOH A 79 379 72 HOH HOH . F 5 HOH A 80 380 73 HOH HOH . F 5 HOH A 81 381 76 HOH HOH . F 5 HOH A 82 382 79 HOH HOH . F 5 HOH A 83 383 83 HOH HOH . F 5 HOH A 84 384 84 HOH HOH . F 5 HOH A 85 385 87 HOH HOH . F 5 HOH A 86 386 89 HOH HOH . F 5 HOH A 87 387 90 HOH HOH . F 5 HOH A 88 388 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -4.578 8.362 15.392 1 17.8 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . C 3 -5.72 7.87 16.214 1 18.31 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . C 3 -4.105 7.563 14.216 1 18.27 ? O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . C 3 -4.823 9.835 14.823 1 19.79 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . C 3 -5.277 10.911 15.676 1 18.38 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . C 3 -5.732 12.081 14.813 1 18.09 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . C 3 -6.915 11.693 14.055 1 17.42 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . C 3 -6.151 13.277 15.683 1 18.65 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . C 3 -4.996 14.061 16.067 1 19.44 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . C 3 -7.045 13.994 14.688 1 19.6 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . C 3 -6.282 14.659 13.653 1 19.64 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . C 3 -7.818 12.816 14.045 1 17.85 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . C 3 -9.055 12.45 14.739 1 18.65 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . C 3 -9.303 11.447 15.608 1 19.39 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . C 3 -10.578 11.527 15.979 1 20.28 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . C 3 -11.14 12.581 15.35 1 19.89 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . C 3 -12.395 13.107 15.368 1 21.58 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . C 3 -13.34 12.534 16.154 1 19.53 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . C 3 -12.7 14.19 14.626 1 19.96 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . C 3 -11.709 14.783 13.834 1 20.08 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . C 3 -10.433 14.221 13.816 1 20.27 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . C 3 -10.178 13.141 14.583 1 17.14 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . C 3 -3.271 8.773 16.308 1 20.23 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . C 3 -2.682 8.07 17.679 1 23.47 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . C 3 -3.736 7.923 18.703 1 22.64 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . C 3 -1.505 8.92 18.002 1 22.1 ? O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . C 3 -2.157 6.612 17.166 1 26.41 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . C 3 -0.981 6.534 16.288 1 31.9 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . C 3 -0.193 5.298 16.728 1 35.14 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . C 3 -0.962 4.127 16.41 1 34.16 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . C 3 1.147 5.137 15.954 1 36.56 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . C 3 2.222 4.679 16.832 1 38.11 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . C 3 0.849 4.03 14.95 1 36.53 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . C 3 2.054 3.291 14.611 1 38.17 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . C 3 -0.066 3.177 15.803 1 35.56 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . C 3 -0.946 2.248 15.049 1 33.99 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . C 3 -1.05 0.897 15.419 1 33.56 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . C 3 -1.878 -0.004 14.743 1 32.57 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . C 3 -1.942 -1.338 15.168 1 30.95 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . C 3 -1.206 -1.75 16.061 1 38.61 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . C 3 -2.742 -2.145 14.512 1 29.36 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . C 3 -2.687 0.457 13.71 1 31.72 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . C 3 -2.575 1.805 13.372 1 32.7 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . C 3 -1.744 2.713 14.011 1 34.09 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . C 3 -5.987 16.236 13.671 1 23.92 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . C 3 -5.494 16.45 12.285 1 23.39 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . C 3 -7.278 16.85 13.973 1 19.36 ? O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . C 3 -4.935 16.318 14.723 1 22.23 ? O3X NAP 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #