data_4P68
#
_model_server_result.job_id            Pg2m2DKhOX8SbyEsn-uY7w 
_model_server_result.datetime_utc      '2024-10-20 00:41:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p68 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4P68 
#
_exptl.entry_id    4P68 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P68 
_cell.length_a            34.132 
_cell.length_b            42.65 
_cell.length_c            98.586 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P68 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 53 A PRO 53 1_555 A N XCN 54 A XCN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale2 A C XCN 54 A XCN 54 1_555 A N PRO 55 A PRO 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 A O ASP 116 A ASP 116 1_555 F CA CA . A CA 205 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc2 A OXT ARG 159 A ARG 159 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc3 F CA CA . A CA 205 1_555 H O HOH . A HOH 306 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc4 F CA CA . A CA 205 1_555 H O HOH . A HOH 324 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 243 n y 
N1 C8A MTX sing 244 n y 
C2 NA2 MTX sing 245 n n 
C2 N3 MTX sing 246 n y 
NA2 HN21 MTX sing 247 n n 
NA2 HN22 MTX sing 248 n n 
N3 C4 MTX doub 249 n y 
C4 NA4 MTX sing 250 n n 
C4 C4A MTX sing 251 n y 
NA4 HN41 MTX sing 252 n n 
NA4 HN42 MTX sing 253 n n 
C4A N5 MTX sing 254 n y 
C4A C8A MTX doub 255 n y 
N5 C6 MTX doub 256 n y 
C6 C7 MTX sing 257 n y 
C6 C9 MTX sing 258 n n 
C7 N8 MTX doub 259 n y 
C7 H7 MTX sing 260 n n 
N8 C8A MTX sing 261 n y 
C9 N10 MTX sing 262 n n 
C9 H91 MTX sing 263 n n 
C9 H92 MTX sing 264 n n 
N10 CM MTX sing 265 n n 
N10 C14 MTX sing 266 n n 
CM HM1 MTX sing 267 n n 
CM HM2 MTX sing 268 n n 
CM HM3 MTX sing 269 n n 
C11 C12 MTX doub 270 n y 
C11 C16 MTX sing 271 n y 
C11 C MTX sing 272 n n 
C12 C13 MTX sing 273 n y 
C12 H12 MTX sing 274 n n 
C13 C14 MTX doub 275 n y 
C13 H13 MTX sing 276 n n 
C14 C15 MTX sing 277 n y 
C15 C16 MTX doub 278 n y 
C15 H15 MTX sing 279 n n 
C16 H16 MTX sing 280 n n 
C O MTX doub 281 n n 
C N MTX sing 282 n n 
N CA MTX sing 283 n n 
N HN MTX sing 284 n n 
CA CT MTX sing 285 n n 
CA CB MTX sing 286 n n 
CA HA MTX sing 287 n n 
CT O1 MTX doub 288 n n 
CT O2 MTX sing 289 n n 
O2 HO2 MTX sing 290 n n 
CB CG MTX sing 291 n n 
CB HB1 MTX sing 292 n n 
CB HB2 MTX sing 293 n n 
CG CD MTX sing 294 n n 
CG HG1 MTX sing 295 n n 
CG HG2 MTX sing 296 n n 
CD OE1 MTX doub 297 n n 
CD OE2 MTX sing 298 n n 
OE2 HOE2 MTX sing 299 n n 
#
_atom_sites.entry_id                     4P68 
_atom_sites.fract_transf_matrix[1][1]    0.029298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 201 161 MTX MTX . 
C 3 NAP A 1 202 164 NAP NAP . 
D 4 ACT A 1 203 201 ACT ACT . 
E 4 ACT A 1 204 202 ACT ACT . 
F 5 CA A 1 205 1 CA CA . 
G 5 CA A 1 206 1 CA CA . 
H 6 HOH A 1 301 39 HOH HOH . 
H 6 HOH A 2 302 24 HOH HOH . 
H 6 HOH A 3 303 43 HOH HOH . 
H 6 HOH A 4 304 30 HOH HOH . 
H 6 HOH A 5 305 36 HOH HOH . 
H 6 HOH A 6 306 41 HOH HOH . 
H 6 HOH A 7 307 34 HOH HOH . 
H 6 HOH A 8 308 29 HOH HOH . 
H 6 HOH A 9 309 27 HOH HOH . 
H 6 HOH A 10 310 10 HOH HOH . 
H 6 HOH A 11 311 32 HOH HOH . 
H 6 HOH A 12 312 14 HOH HOH . 
H 6 HOH A 13 313 6 HOH HOH . 
H 6 HOH A 14 314 12 HOH HOH . 
H 6 HOH A 15 315 35 HOH HOH . 
H 6 HOH A 16 316 15 HOH HOH . 
H 6 HOH A 17 317 25 HOH HOH . 
H 6 HOH A 18 318 28 HOH HOH . 
H 6 HOH A 19 319 22 HOH HOH . 
H 6 HOH A 20 320 13 HOH HOH . 
H 6 HOH A 21 321 37 HOH HOH . 
H 6 HOH A 22 322 38 HOH HOH . 
H 6 HOH A 23 323 31 HOH HOH . 
H 6 HOH A 24 324 40 HOH HOH . 
H 6 HOH A 25 325 8 HOH HOH . 
H 6 HOH A 26 326 11 HOH HOH . 
H 6 HOH A 27 327 33 HOH HOH . 
H 6 HOH A 28 328 1 HOH HOH . 
H 6 HOH A 29 329 2 HOH HOH . 
H 6 HOH A 30 330 3 HOH HOH . 
H 6 HOH A 31 331 4 HOH HOH . 
H 6 HOH A 32 332 5 HOH HOH . 
H 6 HOH A 33 333 16 HOH HOH . 
H 6 HOH A 34 334 17 HOH HOH . 
H 6 HOH A 35 335 18 HOH HOH . 
H 6 HOH A 36 336 19 HOH HOH . 
H 6 HOH A 37 337 20 HOH HOH . 
H 6 HOH A 38 338 21 HOH HOH . 
H 6 HOH A 39 339 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . B 2 -2.201 5.81 -11.104 1 26.98 ? N1 MTX 201 A 1 
HETATM 2 C C2 MTX . . . B 2 -3.356 6.075 -11.731 1 23.87 ? C2 MTX 201 A 1 
HETATM 3 N NA2 MTX . . . B 2 -3.632 7.319 -12.102 1 21.24 ? NA2 MTX 201 A 1 
HETATM 4 N N3 MTX . . . B 2 -4.233 5.102 -11.967 1 21.27 ? N3 MTX 201 A 1 
HETATM 5 C C4 MTX . . . B 2 -3.969 3.864 -11.565 1 23.64 ? C4 MTX 201 A 1 
HETATM 6 N NA4 MTX . . . B 2 -4.82 2.87 -11.778 1 21.75 ? NA4 MTX 201 A 1 
HETATM 7 C C4A MTX . . . B 2 -2.775 3.557 -10.934 1 26.69 ? C4A MTX 201 A 1 
HETATM 8 N N5 MTX . . . B 2 -2.499 2.302 -10.535 1 32.34 ? N5 MTX 201 A 1 
HETATM 9 C C6 MTX . . . B 2 -1.356 1.986 -9.885 1 36.18 ? C6 MTX 201 A 1 
HETATM 10 C C7 MTX . . . B 2 -0.419 3.021 -9.66 1 34.5 ? C7 MTX 201 A 1 
HETATM 11 N N8 MTX . . . B 2 -0.723 4.345 -10.072 1 31.03 ? N8 MTX 201 A 1 
HETATM 12 C C8A MTX . . . B 2 -1.883 4.582 -10.695 1 27.04 ? C8A MTX 201 A 1 
HETATM 13 C C9 MTX . . . B 2 -1.188 0.605 -9.565 1 40.48 ? C9 MTX 201 A 1 
HETATM 14 N N10 MTX . . . B 2 -0.05 0.291 -8.706 1 44.34 ? N10 MTX 201 A 1 
HETATM 15 C CM MTX . . . B 2 0.873 -0.799 -9.093 1 44.3 ? CM MTX 201 A 1 
HETATM 16 C C11 MTX . . . B 2 0.506 2.131 -5.073 1 57.34 ? C11 MTX 201 A 1 
HETATM 17 C C12 MTX . . . B 2 1.615 1.759 -5.817 1 55.25 ? C12 MTX 201 A 1 
HETATM 18 C C13 MTX . . . B 2 1.436 1.147 -7.052 1 52.36 ? C13 MTX 201 A 1 
HETATM 19 C C14 MTX . . . B 2 0.151 0.878 -7.526 1 49.85 ? C14 MTX 201 A 1 
HETATM 20 C C15 MTX . . . B 2 -0.952 1.245 -6.764 1 52.9 ? C15 MTX 201 A 1 
HETATM 21 C C16 MTX . . . B 2 -0.769 1.86 -5.54 1 55.58 ? C16 MTX 201 A 1 
HETATM 22 C C MTX . . . B 2 0.616 2.73 -3.83 1 58.39 ? C MTX 201 A 1 
HETATM 23 O O MTX . . . B 2 1.147 2.115 -2.905 1 58.65 ? O MTX 201 A 1 
HETATM 24 N N MTX . . . B 2 0.019 3.933 -3.682 1 60.04 ? N MTX 201 A 1 
HETATM 25 C CA MTX . . . B 2 -0.021 4.578 -2.351 1 61.27 ? CA MTX 201 A 1 
HETATM 26 C CT MTX . . . B 2 -1.438 4.329 -1.757 1 61.39 ? CT MTX 201 A 1 
HETATM 27 O O1 MTX . . . B 2 -2.429 4.594 -2.478 1 61.52 ? O1 MTX 201 A 1 
HETATM 28 O O2 MTX . . . B 2 -1.494 3.861 -0.588 1 63.12 ? O2 MTX 201 A 1 
HETATM 29 C CB MTX . . . B 2 0.335 6.101 -2.351 1 61.7 ? CB MTX 201 A 1 
HETATM 30 C CG MTX . . . B 2 1.534 6.32 -1.416 1 63.83 ? CG MTX 201 A 1 
HETATM 31 C CD MTX . . . B 2 2.758 5.519 -1.905 1 65.72 ? CD MTX 201 A 1 
HETATM 32 O OE1 MTX . . . B 2 3.613 5.2 -1.038 1 66.4 ? OE1 MTX 201 A 1 
HETATM 33 O OE2 MTX . . . B 2 2.836 5.234 -3.123 1 67.16 ? OE2 MTX 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#