data_4P68
#
_model_server_result.job_id            '_vCVRPo3f9ANqdqLM-YtWA' 
_model_server_result.datetime_utc      '2024-10-20 00:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p68 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    4P68 
#
_exptl.entry_id    4P68 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P68 
_cell.length_a            34.132 
_cell.length_b            42.65 
_cell.length_c            98.586 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P68 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 53 A PRO 53 1_555 A N XCN 54 A XCN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale2 A C XCN 54 A XCN 54 1_555 A N PRO 55 A PRO 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 A O ASP 116 A ASP 116 1_555 F CA CA . A CA 205 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc2 A OXT ARG 159 A ARG 159 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc3 F CA CA . A CA 205 1_555 H O HOH . A HOH 306 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc4 F CA CA . A CA 205 1_555 H O HOH . A HOH 324 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 300 n n 
PA O2A NAP sing 301 n n 
PA O5B NAP sing 302 n n 
PA O3 NAP sing 303 n n 
O2A HOA2 NAP sing 304 n n 
O5B C5B NAP sing 305 n n 
C5B C4B NAP sing 306 n n 
C5B H51A NAP sing 307 n n 
C5B H52A NAP sing 308 n n 
C4B O4B NAP sing 309 n n 
C4B C3B NAP sing 310 n n 
C4B H4B NAP sing 311 n n 
O4B C1B NAP sing 312 n n 
C3B O3B NAP sing 313 n n 
C3B C2B NAP sing 314 n n 
C3B H3B NAP sing 315 n n 
O3B HO3A NAP sing 316 n n 
C2B O2B NAP sing 317 n n 
C2B C1B NAP sing 318 n n 
C2B H2B NAP sing 319 n n 
O2B P2B NAP sing 320 n n 
C1B N9A NAP sing 321 n n 
C1B H1B NAP sing 322 n n 
N9A C8A NAP sing 323 n y 
N9A C4A NAP sing 324 n y 
C8A N7A NAP doub 325 n y 
C8A H8A NAP sing 326 n n 
N7A C5A NAP sing 327 n y 
C5A C6A NAP sing 328 n y 
C5A C4A NAP doub 329 n y 
C6A N6A NAP sing 330 n n 
C6A N1A NAP doub 331 n y 
N6A H61A NAP sing 332 n n 
N6A H62A NAP sing 333 n n 
N1A C2A NAP sing 334 n y 
C2A N3A NAP doub 335 n y 
C2A H2A NAP sing 336 n n 
N3A C4A NAP sing 337 n y 
O3 PN NAP sing 338 n n 
PN O1N NAP doub 339 n n 
PN O2N NAP sing 340 n n 
PN O5D NAP sing 341 n n 
O5D C5D NAP sing 342 n n 
C5D C4D NAP sing 343 n n 
C5D H51N NAP sing 344 n n 
C5D H52N NAP sing 345 n n 
C4D O4D NAP sing 346 n n 
C4D C3D NAP sing 347 n n 
C4D H4D NAP sing 348 n n 
O4D C1D NAP sing 349 n n 
C3D O3D NAP sing 350 n n 
C3D C2D NAP sing 351 n n 
C3D H3D NAP sing 352 n n 
O3D HO3N NAP sing 353 n n 
C2D O2D NAP sing 354 n n 
C2D C1D NAP sing 355 n n 
C2D H2D NAP sing 356 n n 
O2D HO2N NAP sing 357 n n 
C1D N1N NAP sing 358 n n 
C1D H1D NAP sing 359 n n 
N1N C2N NAP sing 360 n y 
N1N C6N NAP doub 361 n y 
C2N C3N NAP doub 362 n y 
C2N H2N NAP sing 363 n n 
C3N C7N NAP sing 364 n n 
C3N C4N NAP sing 365 n y 
C7N O7N NAP doub 366 n n 
C7N N7N NAP sing 367 n n 
N7N H71N NAP sing 368 n n 
N7N H72N NAP sing 369 n n 
C4N C5N NAP doub 370 n y 
C4N H4N NAP sing 371 n n 
C5N C6N NAP sing 372 n y 
C5N H5N NAP sing 373 n n 
C6N H6N NAP sing 374 n n 
P2B O1X NAP doub 375 n n 
P2B O2X NAP sing 376 n n 
P2B O3X NAP sing 377 n n 
O2X HOP2 NAP sing 378 n n 
O3X HOP3 NAP sing 379 n n 
#
_atom_sites.entry_id                     4P68 
_atom_sites.fract_transf_matrix[1][1]    0.029298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 201 161 MTX MTX . 
C 3 NAP A 1 202 164 NAP NAP . 
D 4 ACT A 1 203 201 ACT ACT . 
E 4 ACT A 1 204 202 ACT ACT . 
F 5 CA A 1 205 1 CA CA . 
G 5 CA A 1 206 1 CA CA . 
H 6 HOH A 1 301 39 HOH HOH . 
H 6 HOH A 2 302 24 HOH HOH . 
H 6 HOH A 3 303 43 HOH HOH . 
H 6 HOH A 4 304 30 HOH HOH . 
H 6 HOH A 5 305 36 HOH HOH . 
H 6 HOH A 6 306 41 HOH HOH . 
H 6 HOH A 7 307 34 HOH HOH . 
H 6 HOH A 8 308 29 HOH HOH . 
H 6 HOH A 9 309 27 HOH HOH . 
H 6 HOH A 10 310 10 HOH HOH . 
H 6 HOH A 11 311 32 HOH HOH . 
H 6 HOH A 12 312 14 HOH HOH . 
H 6 HOH A 13 313 6 HOH HOH . 
H 6 HOH A 14 314 12 HOH HOH . 
H 6 HOH A 15 315 35 HOH HOH . 
H 6 HOH A 16 316 15 HOH HOH . 
H 6 HOH A 17 317 25 HOH HOH . 
H 6 HOH A 18 318 28 HOH HOH . 
H 6 HOH A 19 319 22 HOH HOH . 
H 6 HOH A 20 320 13 HOH HOH . 
H 6 HOH A 21 321 37 HOH HOH . 
H 6 HOH A 22 322 38 HOH HOH . 
H 6 HOH A 23 323 31 HOH HOH . 
H 6 HOH A 24 324 40 HOH HOH . 
H 6 HOH A 25 325 8 HOH HOH . 
H 6 HOH A 26 326 11 HOH HOH . 
H 6 HOH A 27 327 33 HOH HOH . 
H 6 HOH A 28 328 1 HOH HOH . 
H 6 HOH A 29 329 2 HOH HOH . 
H 6 HOH A 30 330 3 HOH HOH . 
H 6 HOH A 31 331 4 HOH HOH . 
H 6 HOH A 32 332 5 HOH HOH . 
H 6 HOH A 33 333 16 HOH HOH . 
H 6 HOH A 34 334 17 HOH HOH . 
H 6 HOH A 35 335 18 HOH HOH . 
H 6 HOH A 36 336 19 HOH HOH . 
H 6 HOH A 37 337 20 HOH HOH . 
H 6 HOH A 38 338 21 HOH HOH . 
H 6 HOH A 39 339 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 3 -4.637 -7.547 -15.106 1 17.69 ? PA NAP 202 A 1 
HETATM 2 O O1A NAP . . . C 3 -5.763 -7.06 -15.899 1 12.91 ? O1A NAP 202 A 1 
HETATM 3 O O2A NAP . . . C 3 -4.168 -6.842 -13.938 1 12.35 ? O2A NAP 202 A 1 
HETATM 4 O O5B NAP . . . C 3 -4.894 -9.026 -14.623 1 17.14 ? O5B NAP 202 A 1 
HETATM 5 C C5B NAP . . . C 3 -5.341 -10.01 -15.562 1 16.71 ? C5B NAP 202 A 1 
HETATM 6 C C4B NAP . . . C 3 -5.805 -11.25 -14.768 1 18.41 ? C4B NAP 202 A 1 
HETATM 7 O O4B NAP . . . C 3 -6.972 -10.852 -14.005 1 18.84 ? O4B NAP 202 A 1 
HETATM 8 C C3B NAP . . . C 3 -6.271 -12.394 -15.638 1 19.43 ? C3B NAP 202 A 1 
HETATM 9 O O3B NAP . . . C 3 -5.165 -13.279 -15.982 1 19.98 ? O3B NAP 202 A 1 
HETATM 10 C C2B NAP . . . C 3 -7.246 -13.122 -14.701 1 20.16 ? C2B NAP 202 A 1 
HETATM 11 O O2B NAP . . . C 3 -6.55 -13.94 -13.71 1 19.83 ? O2B NAP 202 A 1 
HETATM 12 C C1B NAP . . . C 3 -7.913 -11.951 -13.977 1 21.78 ? C1B NAP 202 A 1 
HETATM 13 N N9A NAP . . . C 3 -9.205 -11.532 -14.626 1 21.61 ? N9A NAP 202 A 1 
HETATM 14 C C8A NAP . . . C 3 -9.432 -10.465 -15.386 1 20.43 ? C8A NAP 202 A 1 
HETATM 15 N N7A NAP . . . C 3 -10.71 -10.517 -15.767 1 21.47 ? N7A NAP 202 A 1 
HETATM 16 C C5A NAP . . . C 3 -11.266 -11.6 -15.243 1 21.49 ? C5A NAP 202 A 1 
HETATM 17 C C6A NAP . . . C 3 -12.517 -12.097 -15.307 1 24.22 ? C6A NAP 202 A 1 
HETATM 18 N N6A NAP . . . C 3 -13.42 -11.417 -16.031 1 24.19 ? N6A NAP 202 A 1 
HETATM 19 N N1A NAP . . . C 3 -12.854 -13.248 -14.689 1 23.09 ? N1A NAP 202 A 1 
HETATM 20 C C2A NAP . . . C 3 -11.875 -13.917 -13.948 1 23.8 ? C2A NAP 202 A 1 
HETATM 21 N N3A NAP . . . C 3 -10.577 -13.379 -13.903 1 23.56 ? N3A NAP 202 A 1 
HETATM 22 C C4A NAP . . . C 3 -10.32 -12.229 -14.537 1 21.55 ? C4A NAP 202 A 1 
HETATM 23 O O3 NAP . . . C 3 -3.459 -7.96 -16.101 1 19.7 ? O3 NAP 202 A 1 
HETATM 24 P PN NAP . . . C 3 -2.821 -7.204 -17.363 1 24.26 ? PN NAP 202 A 1 
HETATM 25 O O1N NAP . . . C 3 -3.799 -6.775 -18.423 1 25.7 ? O1N NAP 202 A 1 
HETATM 26 O O2N NAP . . . C 3 -1.736 -8.14 -17.707 1 19.82 ? O2N NAP 202 A 1 
HETATM 27 O O5D NAP . . . C 3 -2.226 -5.834 -16.771 1 23.35 ? O5D NAP 202 A 1 
HETATM 28 C C5D NAP . . . C 3 -1.143 -5.841 -15.773 1 23.07 ? C5D NAP 202 A 1 
HETATM 29 C C4D NAP . . . C 3 -0.242 -4.711 -16.203 1 23.77 ? C4D NAP 202 A 1 
HETATM 30 O O4D NAP . . . C 3 -1.004 -3.459 -16.052 1 22.97 ? O4D NAP 202 A 1 
HETATM 31 C C3D NAP . . . C 3 0.957 -4.586 -15.288 1 24.8 ? C3D NAP 202 A 1 
HETATM 32 O O3D NAP . . . C 3 2.128 -4.248 -16.088 1 26.15 ? O3D NAP 202 A 1 
HETATM 33 C C2D NAP . . . C 3 0.579 -3.432 -14.402 1 25.42 ? C2D NAP 202 A 1 
HETATM 34 O O2D NAP . . . C 3 1.739 -2.695 -13.974 1 28.5 ? O2D NAP 202 A 1 
HETATM 35 C C1D NAP . . . C 3 -0.214 -2.561 -15.331 1 23.97 ? C1D NAP 202 A 1 
HETATM 36 N N1N NAP . . . C 3 -1.109 -1.575 -14.625 1 25.2 ? N1N NAP 202 A 1 
HETATM 37 C C2N NAP . . . C 3 -1.059 -0.226 -14.992 1 21.91 ? C2N NAP 202 A 1 
HETATM 38 C C3N NAP . . . C 3 -1.879 0.732 -14.407 1 21.74 ? C3N NAP 202 A 1 
HETATM 39 C C7N NAP . . . C 3 -1.79 2.1 -14.762 1 22.22 ? C7N NAP 202 A 1 
HETATM 40 O O7N NAP . . . C 3 -2.521 2.951 -14.243 1 21.9 ? O7N NAP 202 A 1 
HETATM 41 N N7N NAP . . . C 3 -0.947 2.439 -15.729 1 22.71 ? N7N NAP 202 A 1 
HETATM 42 C C4N NAP . . . C 3 -2.76 0.369 -13.366 1 22.15 ? C4N NAP 202 A 1 
HETATM 43 C C5N NAP . . . C 3 -2.762 -1.001 -12.984 1 23.37 ? C5N NAP 202 A 1 
HETATM 44 C C6N NAP . . . C 3 -2.001 -1.965 -13.618 1 23.89 ? C6N NAP 202 A 1 
HETATM 45 P P2B NAP . . . C 3 -6.431 -15.651 -13.684 1 19.86 ? P2B NAP 202 A 1 
HETATM 46 O O1X NAP . . . C 3 -6.004 -15.921 -12.282 1 14.78 ? O1X NAP 202 A 1 
HETATM 47 O O2X NAP . . . C 3 -7.753 -16.126 -13.983 1 18.78 ? O2X NAP 202 A 1 
HETATM 48 O O3X NAP . . . C 3 -5.378 -15.903 -14.693 1 26.57 ? O3X NAP 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#