data_4P69 # _model_server_result.job_id O_gSIT0iLZFycSI0RV7Vkg _model_server_result.datetime_utc '2024-11-04 22:51:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4P69 # _exptl.entry_id 4P69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P69 _cell.length_a 198.16 _cell.length_b 198.16 _cell.length_c 156.071 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,G,H,J,K,L 1 1 A,E,F,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4P69 _atom_sites.fract_transf_matrix[1][1] 0.005046 _atom_sites.fract_transf_matrix[1][2] 0.002914 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP A 1 601 1604 AMP AMP . F 4 ADP A 1 602 1 ADP ADP . G 4 ADP B 1 601 1761 ADP ADP . H 3 AMP B 1 602 1604 AMP AMP . I 5 HOH A 1 701 580 HOH HOH . I 5 HOH A 2 702 581 HOH HOH . I 5 HOH A 3 703 582 HOH HOH . J 5 HOH B 1 701 580 HOH HOH . J 5 HOH B 2 702 582 HOH HOH . J 5 HOH B 3 703 583 HOH HOH . J 5 HOH B 4 704 584 HOH HOH . K 5 HOH C 1 501 581 HOH HOH . K 5 HOH C 2 502 417 HOH HOH . K 5 HOH C 3 503 418 HOH HOH . K 5 HOH C 4 504 419 HOH HOH . K 5 HOH C 5 505 420 HOH HOH . K 5 HOH C 6 506 421 HOH HOH . K 5 HOH C 7 507 424 HOH HOH . L 5 HOH D 1 501 417 HOH HOH . L 5 HOH D 2 502 418 HOH HOH . L 5 HOH D 3 503 419 HOH HOH . L 5 HOH D 4 504 420 HOH HOH . L 5 HOH D 5 505 421 HOH HOH . L 5 HOH D 6 506 422 HOH HOH . L 5 HOH D 7 507 423 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 4 -30.307 59.511 -53.51 1 96.48 ? PB ADP 602 A 1 HETATM 2 O O1B ADP . . . F 4 -29.556 58.277 -54.102 1 57.65 ? O1B ADP 602 A 1 HETATM 3 O O2B ADP . . . F 4 -30.383 59.278 -52.022 1 78.83 ? O2B ADP 602 A 1 HETATM 4 O O3B ADP . . . F 4 -29.93 60.991 -53.819 1 65.01 ? O3B ADP 602 A 1 HETATM 5 P PA ADP . . . F 4 -32.532 57.982 -54.523 1 81.09 ? PA ADP 602 A 1 HETATM 6 O O1A ADP . . . F 4 -33.983 58.168 -54.294 1 79.89 ? O1A ADP 602 A 1 HETATM 7 O O2A ADP . . . F 4 -31.778 56.854 -53.899 1 77.34 ? O2A ADP 602 A 1 HETATM 8 O O3A ADP . . . F 4 -31.846 59.413 -54.077 1 83.99 ? O3A ADP 602 A 1 HETATM 9 O O5' ADP . . . F 4 -32.524 57.735 -56.109 1 78.6 ? O5' ADP 602 A 1 HETATM 10 C C5' ADP . . . F 4 -32.533 58.94 -56.876 1 85.78 ? C5' ADP 602 A 1 HETATM 11 C C4' ADP . . . F 4 -33.273 58.826 -58.188 1 78.35 ? C4' ADP 602 A 1 HETATM 12 O O4' ADP . . . F 4 -33.673 57.484 -58.424 1 80.76 ? O4' ADP 602 A 1 HETATM 13 C C3' ADP . . . F 4 -34.537 59.678 -58.206 1 75.79 ? C3' ADP 602 A 1 HETATM 14 O O3' ADP . . . F 4 -34.326 61.036 -58.584 1 78.15 ? O3' ADP 602 A 1 HETATM 15 C C2' ADP . . . F 4 -35.36 58.982 -59.242 1 77.5 ? C2' ADP 602 A 1 HETATM 16 O O2' ADP . . . F 4 -34.96 59.379 -60.557 1 71.29 ? O2' ADP 602 A 1 HETATM 17 C C1' ADP . . . F 4 -34.982 57.529 -59.03 1 84.56 ? C1' ADP 602 A 1 HETATM 18 N N9 ADP . . . F 4 -36.025 56.892 -58.188 1 83.21 ? N9 ADP 602 A 1 HETATM 19 C C8 ADP . . . F 4 -35.878 56.502 -56.914 1 82.38 ? C8 ADP 602 A 1 HETATM 20 N N7 ADP . . . F 4 -37.016 55.947 -56.452 1 79.85 ? N7 ADP 602 A 1 HETATM 21 C C5 ADP . . . F 4 -37.896 55.977 -57.448 1 79.82 ? C5 ADP 602 A 1 HETATM 22 C C6 ADP . . . F 4 -39.277 55.537 -57.594 1 75.71 ? C6 ADP 602 A 1 HETATM 23 N N6 ADP . . . F 4 -39.9 54.971 -56.542 1 76.22 ? N6 ADP 602 A 1 HETATM 24 N N1 ADP . . . F 4 -39.849 55.733 -58.791 1 75.25 ? N1 ADP 602 A 1 HETATM 25 C C2 ADP . . . F 4 -39.193 56.323 -59.826 1 83.17 ? C2 ADP 602 A 1 HETATM 26 N N3 ADP . . . F 4 -37.928 56.756 -59.762 1 78.65 ? N3 ADP 602 A 1 HETATM 27 C C4 ADP . . . F 4 -37.25 56.602 -58.601 1 81.03 ? C4 ADP 602 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #