data_4P69 # _model_server_result.job_id 7Aev127lDGDnDXkgdDHIMw _model_server_result.datetime_utc '2024-11-04 22:51:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 4P69 # _exptl.entry_id 4P69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P69 _cell.length_a 198.16 _cell.length_b 198.16 _cell.length_c 156.071 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,G,H,J,K,L 1 1 A,E,F,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 4P69 _atom_sites.fract_transf_matrix[1][1] 0.005046 _atom_sites.fract_transf_matrix[1][2] 0.002914 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP A 1 601 1604 AMP AMP . F 4 ADP A 1 602 1 ADP ADP . G 4 ADP B 1 601 1761 ADP ADP . H 3 AMP B 1 602 1604 AMP AMP . I 5 HOH A 1 701 580 HOH HOH . I 5 HOH A 2 702 581 HOH HOH . I 5 HOH A 3 703 582 HOH HOH . J 5 HOH B 1 701 580 HOH HOH . J 5 HOH B 2 702 582 HOH HOH . J 5 HOH B 3 703 583 HOH HOH . J 5 HOH B 4 704 584 HOH HOH . K 5 HOH C 1 501 581 HOH HOH . K 5 HOH C 2 502 417 HOH HOH . K 5 HOH C 3 503 418 HOH HOH . K 5 HOH C 4 504 419 HOH HOH . K 5 HOH C 5 505 420 HOH HOH . K 5 HOH C 6 506 421 HOH HOH . K 5 HOH C 7 507 424 HOH HOH . L 5 HOH D 1 501 417 HOH HOH . L 5 HOH D 2 502 418 HOH HOH . L 5 HOH D 3 503 419 HOH HOH . L 5 HOH D 4 504 420 HOH HOH . L 5 HOH D 5 505 421 HOH HOH . L 5 HOH D 6 506 422 HOH HOH . L 5 HOH D 7 507 423 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 3 -49.16 10.064 -24.19 1 84.24 ? P AMP 602 B 1 HETATM 2 O O1P AMP . . . H 3 -49.983 10.573 -25.33 1 80.72 ? O1P AMP 602 B 1 HETATM 3 O O2P AMP . . . H 3 -47.728 9.761 -24.617 1 77.12 ? O2P AMP 602 B 1 HETATM 4 O O3P AMP . . . H 3 -49.884 9.007 -23.396 1 85.02 ? O3P AMP 602 B 1 HETATM 5 O O5' AMP . . . H 3 -49.104 11.266 -23.12 1 70.41 ? O5' AMP 602 B 1 HETATM 6 C C5' AMP . . . H 3 -50.098 12.282 -23.073 1 68.8 ? C5' AMP 602 B 1 HETATM 7 C C4' AMP . . . H 3 -50.443 12.561 -21.634 1 71.62 ? C4' AMP 602 B 1 HETATM 8 O O4' AMP . . . H 3 -50.485 11.284 -21.026 1 73.23 ? O4' AMP 602 B 1 HETATM 9 C C3' AMP . . . H 3 -49.375 13.371 -20.894 1 77.99 ? C3' AMP 602 B 1 HETATM 10 O O3' AMP . . . H 3 -49.92 14.171 -19.83 1 71.05 ? O3' AMP 602 B 1 HETATM 11 C C2' AMP . . . H 3 -48.492 12.307 -20.272 1 78.22 ? C2' AMP 602 B 1 HETATM 12 O O2' AMP . . . H 3 -47.72 12.825 -19.178 1 72.25 ? O2' AMP 602 B 1 HETATM 13 C C1' AMP . . . H 3 -49.59 11.316 -19.905 1 77.73 ? C1' AMP 602 B 1 HETATM 14 N N9 AMP . . . H 3 -49.143 9.944 -19.607 1 77.49 ? N9 AMP 602 B 1 HETATM 15 C C8 AMP . . . H 3 -48.859 8.96 -20.48 1 80.16 ? C8 AMP 602 B 1 HETATM 16 N N7 AMP . . . H 3 -48.51 7.826 -19.827 1 77.39 ? N7 AMP 602 B 1 HETATM 17 C C5 AMP . . . H 3 -48.592 8.097 -18.518 1 73.9 ? C5 AMP 602 B 1 HETATM 18 C C6 AMP . . . H 3 -48.358 7.357 -17.272 1 76.92 ? C6 AMP 602 B 1 HETATM 19 N N6 AMP . . . H 3 -47.967 6.068 -17.327 1 81.17 ? N6 AMP 602 B 1 HETATM 20 N N1 AMP . . . H 3 -48.552 8.003 -16.1 1 76.94 ? N1 AMP 602 B 1 HETATM 21 C C2 AMP . . . H 3 -48.952 9.288 -16.069 1 75.47 ? C2 AMP 602 B 1 HETATM 22 N N3 AMP . . . H 3 -49.187 10.033 -17.16 1 70.08 ? N3 AMP 602 B 1 HETATM 23 C C4 AMP . . . H 3 -49.02 9.489 -18.379 1 73.1 ? C4 AMP 602 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #