data_4P76
#
_model_server_result.job_id            cXijPegDdpy2KqYj4vKAtQ 
_model_server_result.datetime_utc      '2025-03-12 20:06:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4P76 
#
_exptl.entry_id    4P76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P76 
_cell.length_a            49.862 
_cell.length_b            84.426 
_cell.length_c            118.218 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P76 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 84.426 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 62 A PHE 62 1_555 A N1 CR8 63 A CR8 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C3 CR8 63 A CR8 65 1_555 A N ASN 64 A ASN 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 B C PHE 62 B PHE 62 1_555 B N1 CR8 63 B CR8 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale4 B C3 CR8 63 B CR8 65 1_555 B N ASN 64 B ASN 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 B OH TYR 212 B TYR 214 1_555 C NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4P76 
_atom_sites.fract_transf_matrix[1][1]    0.020055 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA B 1 301 1 NA NA . 
D 3 HOH A 1 301 50 HOH HOH . 
D 3 HOH A 2 302 13 HOH HOH . 
D 3 HOH A 3 303 12 HOH HOH . 
D 3 HOH A 4 304 32 HOH HOH . 
D 3 HOH A 5 305 16 HOH HOH . 
D 3 HOH A 6 306 48 HOH HOH . 
D 3 HOH A 7 307 45 HOH HOH . 
D 3 HOH A 8 308 6 HOH HOH . 
D 3 HOH A 9 309 17 HOH HOH . 
D 3 HOH A 10 310 23 HOH HOH . 
D 3 HOH A 11 311 24 HOH HOH . 
D 3 HOH A 12 312 33 HOH HOH . 
D 3 HOH A 13 313 43 HOH HOH . 
D 3 HOH A 14 314 47 HOH HOH . 
D 3 HOH A 15 315 55 HOH HOH . 
D 3 HOH A 16 316 56 HOH HOH . 
D 3 HOH A 17 317 58 HOH HOH . 
D 3 HOH A 18 318 59 HOH HOH . 
D 3 HOH A 19 319 65 HOH HOH . 
E 3 HOH B 1 401 26 HOH HOH . 
E 3 HOH B 2 402 11 HOH HOH . 
E 3 HOH B 3 403 4 HOH HOH . 
E 3 HOH B 4 404 51 HOH HOH . 
E 3 HOH B 5 405 63 HOH HOH . 
E 3 HOH B 6 406 61 HOH HOH . 
E 3 HOH B 7 407 60 HOH HOH . 
E 3 HOH B 8 408 36 HOH HOH . 
E 3 HOH B 9 409 1 HOH HOH . 
E 3 HOH B 10 410 2 HOH HOH . 
E 3 HOH B 11 411 7 HOH HOH . 
E 3 HOH B 12 412 9 HOH HOH . 
E 3 HOH B 13 413 15 HOH HOH . 
E 3 HOH B 14 414 21 HOH HOH . 
E 3 HOH B 15 415 22 HOH HOH . 
E 3 HOH B 16 416 25 HOH HOH . 
E 3 HOH B 17 417 27 HOH HOH . 
E 3 HOH B 18 418 28 HOH HOH . 
E 3 HOH B 19 419 35 HOH HOH . 
E 3 HOH B 20 420 38 HOH HOH . 
E 3 HOH B 21 421 39 HOH HOH . 
E 3 HOH B 22 422 64 HOH HOH . 
E 3 HOH B 23 423 67 HOH HOH . 
E 3 HOH B 24 424 69 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               7.025 
_atom_site.Cartn_y               27.663 
_atom_site.Cartn_z               62.057 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.32 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#