data_4P77 # _model_server_result.job_id V54zJ5BhLKdPDKZ1tHimNg _model_server_result.datetime_utc '2024-11-23 20:55:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4P77 # _exptl.entry_id 4P77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBULOSE-5-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P77 _cell.length_a 54.408 _cell.length_b 74.086 _cell.length_c 99.331 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P77 _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C5 H11 O8 P' _chem_comp.formula_weight 230.11 _chem_comp.id 5RP _chem_comp.mon_nstd_flag . _chem_comp.name RIBULOSE-5-PHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 5RP sing 1 n n C2 O1 5RP sing 2 n n C2 H21 5RP sing 3 n n C2 H22 5RP sing 4 n n C3 C5 5RP sing 5 n n C3 O4 5RP doub 6 n n C5 O13 5RP sing 7 n n C5 C6 5RP sing 8 n n C5 H5 5RP sing 9 n n O13 H13 5RP sing 10 n n C6 O14 5RP sing 11 n n C6 C7 5RP sing 12 n n C6 H6 5RP sing 13 n n O14 H14 5RP sing 14 n n C7 O8 5RP sing 15 n n C7 H71 5RP sing 16 n n C7 H72 5RP sing 17 n n O8 P9 5RP sing 18 n n P9 O12 5RP doub 19 n n P9 O11 5RP sing 20 n n P9 O10 5RP sing 21 n n O11 H11 5RP sing 22 n n O10 H10 5RP sing 23 n n O1 HO1 5RP sing 24 n n # _atom_sites.entry_id 4P77 _atom_sites.fract_transf_matrix[1][1] 0.01838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5RP A 1 301 500 5RP 5RP . D 3 GOL A 1 302 4 GOL GOL . E 2 5RP B 1 500 500 5RP 5RP . F 4 HOH A 1 401 252 HOH HOH . F 4 HOH A 2 402 163 HOH HOH . F 4 HOH A 3 403 253 HOH HOH . F 4 HOH A 4 404 113 HOH HOH . F 4 HOH A 5 405 238 HOH HOH . F 4 HOH A 6 406 201 HOH HOH . F 4 HOH A 7 407 55 HOH HOH . F 4 HOH A 8 408 199 HOH HOH . F 4 HOH A 9 409 56 HOH HOH . F 4 HOH A 10 410 185 HOH HOH . F 4 HOH A 11 411 90 HOH HOH . F 4 HOH A 12 412 135 HOH HOH . F 4 HOH A 13 413 94 HOH HOH . F 4 HOH A 14 414 143 HOH HOH . F 4 HOH A 15 415 266 HOH HOH . F 4 HOH A 16 416 244 HOH HOH . F 4 HOH A 17 417 264 HOH HOH . F 4 HOH A 18 418 233 HOH HOH . F 4 HOH A 19 419 263 HOH HOH . F 4 HOH A 20 420 102 HOH HOH . F 4 HOH A 21 421 174 HOH HOH . F 4 HOH A 22 422 231 HOH HOH . F 4 HOH A 23 423 155 HOH HOH . F 4 HOH A 24 424 131 HOH HOH . F 4 HOH A 25 425 109 HOH HOH . F 4 HOH A 26 426 230 HOH HOH . F 4 HOH A 27 427 262 HOH HOH . F 4 HOH A 28 428 164 HOH HOH . F 4 HOH A 29 429 1 HOH HOH . F 4 HOH A 30 430 2 HOH HOH . F 4 HOH A 31 431 3 HOH HOH . F 4 HOH A 32 432 4 HOH HOH . F 4 HOH A 33 433 5 HOH HOH . F 4 HOH A 34 434 8 HOH HOH . F 4 HOH A 35 435 10 HOH HOH . F 4 HOH A 36 436 11 HOH HOH . F 4 HOH A 37 437 13 HOH HOH . F 4 HOH A 38 438 16 HOH HOH . F 4 HOH A 39 439 17 HOH HOH . F 4 HOH A 40 440 18 HOH HOH . F 4 HOH A 41 441 20 HOH HOH . F 4 HOH A 42 442 22 HOH HOH . F 4 HOH A 43 443 23 HOH HOH . F 4 HOH A 44 444 25 HOH HOH . F 4 HOH A 45 445 30 HOH HOH . F 4 HOH A 46 446 31 HOH HOH . F 4 HOH A 47 447 32 HOH HOH . F 4 HOH A 48 448 35 HOH HOH . F 4 HOH A 49 449 41 HOH HOH . F 4 HOH A 50 450 43 HOH HOH . F 4 HOH A 51 451 44 HOH HOH . F 4 HOH A 52 452 45 HOH HOH . F 4 HOH A 53 453 47 HOH HOH . F 4 HOH A 54 454 48 HOH HOH . F 4 HOH A 55 455 53 HOH HOH . F 4 HOH A 56 456 57 HOH HOH . F 4 HOH A 57 457 60 HOH HOH . F 4 HOH A 58 458 62 HOH HOH . F 4 HOH A 59 459 63 HOH HOH . F 4 HOH A 60 460 70 HOH HOH . F 4 HOH A 61 461 71 HOH HOH . F 4 HOH A 62 462 72 HOH HOH . F 4 HOH A 63 463 73 HOH HOH . F 4 HOH A 64 464 74 HOH HOH . F 4 HOH A 65 465 78 HOH HOH . F 4 HOH A 66 466 80 HOH HOH . F 4 HOH A 67 467 83 HOH HOH . F 4 HOH A 68 468 84 HOH HOH . F 4 HOH A 69 469 88 HOH HOH . F 4 HOH A 70 470 93 HOH HOH . F 4 HOH A 71 471 97 HOH HOH . F 4 HOH A 72 472 98 HOH HOH . F 4 HOH A 73 473 101 HOH HOH . F 4 HOH A 74 474 104 HOH HOH . F 4 HOH A 75 475 107 HOH HOH . F 4 HOH A 76 476 110 HOH HOH . F 4 HOH A 77 477 114 HOH HOH . F 4 HOH A 78 478 119 HOH HOH . F 4 HOH A 79 479 120 HOH HOH . F 4 HOH A 80 480 121 HOH HOH . F 4 HOH A 81 481 123 HOH HOH . F 4 HOH A 82 482 128 HOH HOH . F 4 HOH A 83 483 129 HOH HOH . F 4 HOH A 84 484 132 HOH HOH . F 4 HOH A 85 485 133 HOH HOH . F 4 HOH A 86 486 134 HOH HOH . F 4 HOH A 87 487 145 HOH HOH . F 4 HOH A 88 488 146 HOH HOH . F 4 HOH A 89 489 147 HOH HOH . F 4 HOH A 90 490 149 HOH HOH . F 4 HOH A 91 491 150 HOH HOH . F 4 HOH A 92 492 151 HOH HOH . F 4 HOH A 93 493 153 HOH HOH . F 4 HOH A 94 494 154 HOH HOH . F 4 HOH A 95 495 158 HOH HOH . F 4 HOH A 96 496 160 HOH HOH . F 4 HOH A 97 497 161 HOH HOH . F 4 HOH A 98 498 166 HOH HOH . F 4 HOH A 99 499 168 HOH HOH . F 4 HOH A 100 500 170 HOH HOH . F 4 HOH A 101 501 171 HOH HOH . F 4 HOH A 102 502 172 HOH HOH . F 4 HOH A 103 503 173 HOH HOH . F 4 HOH A 104 504 175 HOH HOH . F 4 HOH A 105 505 177 HOH HOH . F 4 HOH A 106 506 180 HOH HOH . F 4 HOH A 107 507 182 HOH HOH . F 4 HOH A 108 508 184 HOH HOH . F 4 HOH A 109 509 186 HOH HOH . F 4 HOH A 110 510 187 HOH HOH . F 4 HOH A 111 511 192 HOH HOH . F 4 HOH A 112 512 194 HOH HOH . F 4 HOH A 113 513 195 HOH HOH . F 4 HOH A 114 514 197 HOH HOH . F 4 HOH A 115 515 200 HOH HOH . F 4 HOH A 116 516 202 HOH HOH . F 4 HOH A 117 517 203 HOH HOH . F 4 HOH A 118 518 204 HOH HOH . F 4 HOH A 119 519 205 HOH HOH . F 4 HOH A 120 520 207 HOH HOH . F 4 HOH A 121 521 208 HOH HOH . F 4 HOH A 122 522 210 HOH HOH . F 4 HOH A 123 523 211 HOH HOH . F 4 HOH A 124 524 212 HOH HOH . F 4 HOH A 125 525 214 HOH HOH . F 4 HOH A 126 526 215 HOH HOH . F 4 HOH A 127 527 221 HOH HOH . F 4 HOH A 128 528 223 HOH HOH . F 4 HOH A 129 529 226 HOH HOH . F 4 HOH A 130 530 228 HOH HOH . F 4 HOH A 131 531 229 HOH HOH . F 4 HOH A 132 532 236 HOH HOH . F 4 HOH A 133 533 249 HOH HOH . F 4 HOH A 134 534 251 HOH HOH . F 4 HOH A 135 535 254 HOH HOH . F 4 HOH A 136 536 256 HOH HOH . F 4 HOH A 137 537 258 HOH HOH . F 4 HOH A 138 538 267 HOH HOH . F 4 HOH A 139 539 268 HOH HOH . F 4 HOH A 140 540 274 HOH HOH . F 4 HOH A 141 541 275 HOH HOH . F 4 HOH A 142 542 276 HOH HOH . F 4 HOH A 143 543 278 HOH HOH . G 4 HOH B 1 601 58 HOH HOH . G 4 HOH B 2 602 240 HOH HOH . G 4 HOH B 3 603 116 HOH HOH . G 4 HOH B 4 604 261 HOH HOH . G 4 HOH B 5 605 247 HOH HOH . G 4 HOH B 6 606 141 HOH HOH . G 4 HOH B 7 607 235 HOH HOH . G 4 HOH B 8 608 243 HOH HOH . G 4 HOH B 9 609 179 HOH HOH . G 4 HOH B 10 610 245 HOH HOH . G 4 HOH B 11 611 103 HOH HOH . G 4 HOH B 12 612 159 HOH HOH . G 4 HOH B 13 613 190 HOH HOH . G 4 HOH B 14 614 112 HOH HOH . G 4 HOH B 15 615 111 HOH HOH . G 4 HOH B 16 616 125 HOH HOH . G 4 HOH B 17 617 15 HOH HOH . G 4 HOH B 18 618 246 HOH HOH . G 4 HOH B 19 619 178 HOH HOH . G 4 HOH B 20 620 49 HOH HOH . G 4 HOH B 21 621 50 HOH HOH . G 4 HOH B 22 622 273 HOH HOH . G 4 HOH B 23 623 122 HOH HOH . G 4 HOH B 24 624 157 HOH HOH . G 4 HOH B 25 625 279 HOH HOH . G 4 HOH B 26 626 272 HOH HOH . G 4 HOH B 27 627 269 HOH HOH . G 4 HOH B 28 628 27 HOH HOH . G 4 HOH B 29 629 241 HOH HOH . G 4 HOH B 30 630 283 HOH HOH . G 4 HOH B 31 631 248 HOH HOH . G 4 HOH B 32 632 126 HOH HOH . G 4 HOH B 33 633 234 HOH HOH . G 4 HOH B 34 634 284 HOH HOH . G 4 HOH B 35 635 217 HOH HOH . G 4 HOH B 36 636 86 HOH HOH . G 4 HOH B 37 637 259 HOH HOH . G 4 HOH B 38 638 79 HOH HOH . G 4 HOH B 39 639 255 HOH HOH . G 4 HOH B 40 640 82 HOH HOH . G 4 HOH B 41 641 271 HOH HOH . G 4 HOH B 42 642 213 HOH HOH . G 4 HOH B 43 643 6 HOH HOH . G 4 HOH B 44 644 7 HOH HOH . G 4 HOH B 45 645 9 HOH HOH . G 4 HOH B 46 646 12 HOH HOH . G 4 HOH B 47 647 14 HOH HOH . G 4 HOH B 48 648 19 HOH HOH . G 4 HOH B 49 649 21 HOH HOH . G 4 HOH B 50 650 24 HOH HOH . G 4 HOH B 51 651 26 HOH HOH . G 4 HOH B 52 652 28 HOH HOH . G 4 HOH B 53 653 29 HOH HOH . G 4 HOH B 54 654 33 HOH HOH . G 4 HOH B 55 655 34 HOH HOH . G 4 HOH B 56 656 36 HOH HOH . G 4 HOH B 57 657 37 HOH HOH . G 4 HOH B 58 658 38 HOH HOH . G 4 HOH B 59 659 39 HOH HOH . G 4 HOH B 60 660 40 HOH HOH . G 4 HOH B 61 661 42 HOH HOH . G 4 HOH B 62 662 46 HOH HOH . G 4 HOH B 63 663 51 HOH HOH . G 4 HOH B 64 664 52 HOH HOH . G 4 HOH B 65 665 54 HOH HOH . G 4 HOH B 66 666 59 HOH HOH . G 4 HOH B 67 667 61 HOH HOH . G 4 HOH B 68 668 64 HOH HOH . G 4 HOH B 69 669 65 HOH HOH . G 4 HOH B 70 670 66 HOH HOH . G 4 HOH B 71 671 67 HOH HOH . G 4 HOH B 72 672 68 HOH HOH . G 4 HOH B 73 673 69 HOH HOH . G 4 HOH B 74 674 75 HOH HOH . G 4 HOH B 75 675 76 HOH HOH . G 4 HOH B 76 676 77 HOH HOH . G 4 HOH B 77 677 81 HOH HOH . G 4 HOH B 78 678 85 HOH HOH . G 4 HOH B 79 679 87 HOH HOH . G 4 HOH B 80 680 89 HOH HOH . G 4 HOH B 81 681 91 HOH HOH . G 4 HOH B 82 682 92 HOH HOH . G 4 HOH B 83 683 95 HOH HOH . G 4 HOH B 84 684 96 HOH HOH . G 4 HOH B 85 685 99 HOH HOH . G 4 HOH B 86 686 100 HOH HOH . G 4 HOH B 87 687 105 HOH HOH . G 4 HOH B 88 688 106 HOH HOH . G 4 HOH B 89 689 108 HOH HOH . G 4 HOH B 90 690 115 HOH HOH . G 4 HOH B 91 691 117 HOH HOH . G 4 HOH B 92 692 118 HOH HOH . G 4 HOH B 93 693 124 HOH HOH . G 4 HOH B 94 694 127 HOH HOH . G 4 HOH B 95 695 130 HOH HOH . G 4 HOH B 96 696 136 HOH HOH . G 4 HOH B 97 697 137 HOH HOH . G 4 HOH B 98 698 138 HOH HOH . G 4 HOH B 99 699 139 HOH HOH . G 4 HOH B 100 700 140 HOH HOH . G 4 HOH B 101 701 142 HOH HOH . G 4 HOH B 102 702 144 HOH HOH . G 4 HOH B 103 703 148 HOH HOH . G 4 HOH B 104 704 152 HOH HOH . G 4 HOH B 105 705 156 HOH HOH . G 4 HOH B 106 706 162 HOH HOH . G 4 HOH B 107 707 165 HOH HOH . G 4 HOH B 108 708 167 HOH HOH . G 4 HOH B 109 709 169 HOH HOH . G 4 HOH B 110 710 176 HOH HOH . G 4 HOH B 111 711 181 HOH HOH . G 4 HOH B 112 712 183 HOH HOH . G 4 HOH B 113 713 188 HOH HOH . G 4 HOH B 114 714 189 HOH HOH . G 4 HOH B 115 715 191 HOH HOH . G 4 HOH B 116 716 193 HOH HOH . G 4 HOH B 117 717 196 HOH HOH . G 4 HOH B 118 718 198 HOH HOH . G 4 HOH B 119 719 206 HOH HOH . G 4 HOH B 120 720 209 HOH HOH . G 4 HOH B 121 721 216 HOH HOH . G 4 HOH B 122 722 218 HOH HOH . G 4 HOH B 123 723 219 HOH HOH . G 4 HOH B 124 724 220 HOH HOH . G 4 HOH B 125 725 222 HOH HOH . G 4 HOH B 126 726 224 HOH HOH . G 4 HOH B 127 727 225 HOH HOH . G 4 HOH B 128 728 227 HOH HOH . G 4 HOH B 129 729 232 HOH HOH . G 4 HOH B 130 730 237 HOH HOH . G 4 HOH B 131 731 239 HOH HOH . G 4 HOH B 132 732 242 HOH HOH . G 4 HOH B 133 733 250 HOH HOH . G 4 HOH B 134 734 257 HOH HOH . G 4 HOH B 135 735 260 HOH HOH . G 4 HOH B 136 736 265 HOH HOH . G 4 HOH B 137 737 270 HOH HOH . G 4 HOH B 138 738 277 HOH HOH . G 4 HOH B 139 739 280 HOH HOH . G 4 HOH B 140 740 281 HOH HOH . G 4 HOH B 141 741 282 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5RP . . . C 2 -11.062 4.555 -28.036 1 42.03 ? C2 5RP 301 A 1 HETATM 2 C C3 5RP . . . C 2 -11.725 4.332 -29.36 1 45.56 ? C3 5RP 301 A 1 HETATM 3 C C5 5RP . . . C 2 -11.486 5.361 -30.424 1 48.08 ? C5 5RP 301 A 1 HETATM 4 O O13 5RP . . . C 2 -12.344 5.13 -31.565 1 53.46 ? O13 5RP 301 A 1 HETATM 5 C C6 5RP . . . C 2 -10.009 5.224 -30.736 1 45.19 ? C6 5RP 301 A 1 HETATM 6 O O14 5RP . . . C 2 -9.618 6.104 -31.799 1 48.98 ? O14 5RP 301 A 1 HETATM 7 C C7 5RP . . . C 2 -9.719 3.78 -31.114 1 40.61 ? C7 5RP 301 A 1 HETATM 8 O O8 5RP . . . C 2 -8.572 3.896 -31.905 1 35.54 ? O8 5RP 301 A 1 HETATM 9 P P9 5RP . . . C 2 -8.222 3.035 -33.204 1 28.26 ? P9 5RP 301 A 1 HETATM 10 O O12 5RP . . . C 2 -8.243 4.064 -34.314 1 28.46 ? O12 5RP 301 A 1 HETATM 11 O O11 5RP . . . C 2 -6.864 2.512 -32.787 1 26.49 ? O11 5RP 301 A 1 HETATM 12 O O10 5RP . . . C 2 -9.267 1.972 -33.311 1 29.98 ? O10 5RP 301 A 1 HETATM 13 O O4 5RP . . . C 2 -12.392 3.326 -29.567 1 43.44 ? O4 5RP 301 A 1 HETATM 14 O O1 5RP . . . C 2 -11.973 4.211 -26.997 1 40.96 ? O1 5RP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #