data_4P78
#
_model_server_result.job_id            6jpJDn0h1FXaVuNwG_D3Mw 
_model_server_result.datetime_utc      '2025-08-29 21:18:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
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_entry.id    4P78 
#
_exptl.entry_id    4P78 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P78 
_cell.length_a            47.17 
_cell.length_b            83.16 
_cell.length_c            88.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P78 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4P78 
_atom_sites.fract_transf_matrix[1][1]    0.0212 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012025 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011302 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL B 1 201 1 GOL GOL . 
F 4 HOH A 1 201 22 HOH HOH . 
F 4 HOH A 2 202 21 HOH HOH . 
F 4 HOH A 3 203 103 HOH HOH . 
F 4 HOH A 4 204 1 HOH HOH . 
F 4 HOH A 5 205 5 HOH HOH . 
F 4 HOH A 6 206 14 HOH HOH . 
F 4 HOH A 7 207 17 HOH HOH . 
F 4 HOH A 8 208 18 HOH HOH . 
F 4 HOH A 9 209 27 HOH HOH . 
F 4 HOH A 10 210 28 HOH HOH . 
F 4 HOH A 11 211 29 HOH HOH . 
F 4 HOH A 12 212 36 HOH HOH . 
F 4 HOH A 13 213 45 HOH HOH . 
F 4 HOH A 14 214 52 HOH HOH . 
F 4 HOH A 15 215 56 HOH HOH . 
F 4 HOH A 16 216 69 HOH HOH . 
F 4 HOH A 17 217 74 HOH HOH . 
F 4 HOH A 18 218 78 HOH HOH . 
F 4 HOH A 19 219 82 HOH HOH . 
F 4 HOH A 20 220 86 HOH HOH . 
F 4 HOH A 21 221 100 HOH HOH . 
F 4 HOH A 22 222 101 HOH HOH . 
F 4 HOH A 23 223 105 HOH HOH . 
F 4 HOH A 24 224 112 HOH HOH . 
F 4 HOH A 25 225 113 HOH HOH . 
G 4 HOH B 1 301 92 HOH HOH . 
G 4 HOH B 2 302 12 HOH HOH . 
G 4 HOH B 3 303 11 HOH HOH . 
G 4 HOH B 4 304 2 HOH HOH . 
G 4 HOH B 5 305 54 HOH HOH . 
G 4 HOH B 6 306 44 HOH HOH . 
G 4 HOH B 7 307 114 HOH HOH . 
G 4 HOH B 8 308 108 HOH HOH . 
G 4 HOH B 9 309 84 HOH HOH . 
G 4 HOH B 10 310 3 HOH HOH . 
G 4 HOH B 11 311 7 HOH HOH . 
G 4 HOH B 12 312 9 HOH HOH . 
G 4 HOH B 13 313 15 HOH HOH . 
G 4 HOH B 14 314 19 HOH HOH . 
G 4 HOH B 15 315 20 HOH HOH . 
G 4 HOH B 16 316 26 HOH HOH . 
G 4 HOH B 17 317 30 HOH HOH . 
G 4 HOH B 18 318 32 HOH HOH . 
G 4 HOH B 19 319 34 HOH HOH . 
G 4 HOH B 20 320 40 HOH HOH . 
G 4 HOH B 21 321 42 HOH HOH . 
G 4 HOH B 22 322 47 HOH HOH . 
G 4 HOH B 23 323 49 HOH HOH . 
G 4 HOH B 24 324 50 HOH HOH . 
G 4 HOH B 25 325 51 HOH HOH . 
G 4 HOH B 26 326 53 HOH HOH . 
G 4 HOH B 27 327 59 HOH HOH . 
G 4 HOH B 28 328 60 HOH HOH . 
G 4 HOH B 29 329 64 HOH HOH . 
G 4 HOH B 30 330 68 HOH HOH . 
G 4 HOH B 31 331 76 HOH HOH . 
G 4 HOH B 32 332 77 HOH HOH . 
G 4 HOH B 33 333 81 HOH HOH . 
G 4 HOH B 34 334 89 HOH HOH . 
G 4 HOH B 35 335 93 HOH HOH . 
G 4 HOH B 36 336 94 HOH HOH . 
G 4 HOH B 37 337 97 HOH HOH . 
G 4 HOH B 38 338 111 HOH HOH . 
G 4 HOH B 39 339 115 HOH HOH . 
H 4 HOH C 1 101 46 HOH HOH . 
H 4 HOH C 2 102 10 HOH HOH . 
H 4 HOH C 3 103 62 HOH HOH . 
H 4 HOH C 4 104 110 HOH HOH . 
H 4 HOH C 5 105 96 HOH HOH . 
H 4 HOH C 6 106 37 HOH HOH . 
H 4 HOH C 7 107 43 HOH HOH . 
H 4 HOH C 8 108 25 HOH HOH . 
H 4 HOH C 9 109 80 HOH HOH . 
H 4 HOH C 10 110 16 HOH HOH . 
H 4 HOH C 11 111 4 HOH HOH . 
H 4 HOH C 12 112 6 HOH HOH . 
H 4 HOH C 13 113 8 HOH HOH . 
H 4 HOH C 14 114 23 HOH HOH . 
H 4 HOH C 15 115 24 HOH HOH . 
H 4 HOH C 16 116 31 HOH HOH . 
H 4 HOH C 17 117 41 HOH HOH . 
H 4 HOH C 18 118 48 HOH HOH . 
H 4 HOH C 19 119 55 HOH HOH . 
H 4 HOH C 20 120 63 HOH HOH . 
H 4 HOH C 21 121 65 HOH HOH . 
H 4 HOH C 22 122 72 HOH HOH . 
H 4 HOH C 23 123 79 HOH HOH . 
H 4 HOH C 24 124 85 HOH HOH . 
H 4 HOH C 25 125 99 HOH HOH . 
H 4 HOH C 26 126 106 HOH HOH . 
H 4 HOH C 27 127 107 HOH HOH . 
H 4 HOH C 28 128 109 HOH HOH . 
I 4 HOH D 1 101 58 HOH HOH . 
I 4 HOH D 2 102 13 HOH HOH . 
I 4 HOH D 3 103 102 HOH HOH . 
I 4 HOH D 4 104 75 HOH HOH . 
I 4 HOH D 5 105 33 HOH HOH . 
I 4 HOH D 6 106 104 HOH HOH . 
I 4 HOH D 7 107 70 HOH HOH . 
I 4 HOH D 8 108 35 HOH HOH . 
I 4 HOH D 9 109 38 HOH HOH . 
I 4 HOH D 10 110 39 HOH HOH . 
I 4 HOH D 11 111 57 HOH HOH . 
I 4 HOH D 12 112 61 HOH HOH . 
I 4 HOH D 13 113 66 HOH HOH . 
I 4 HOH D 14 114 67 HOH HOH . 
I 4 HOH D 15 115 71 HOH HOH . 
I 4 HOH D 16 116 73 HOH HOH . 
I 4 HOH D 17 117 83 HOH HOH . 
I 4 HOH D 18 118 87 HOH HOH . 
I 4 HOH D 19 119 88 HOH HOH . 
I 4 HOH D 20 120 90 HOH HOH . 
I 4 HOH D 21 121 91 HOH HOH . 
I 4 HOH D 22 122 95 HOH HOH . 
I 4 HOH D 23 123 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -11.516 -10.711 41.907 1 37.04 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . E 3 -12.869 -10.359 41.634 1 37.13 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . E 3 -11.434 -11.781 43.005 1 31.2 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . E 3 -12.525 -12.667 42.944 1 30.03 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . E 3 -10.212 -12.636 42.787 1 27.49 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . E 3 -9.676 -13.127 44.003 1 43.8 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           770 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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