data_4P79 # _model_server_result.job_id 4WjxG3alI9FyLKOh24BBIQ _model_server_result.datetime_utc '2024-12-26 12:11:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4P79 # _exptl.entry_id 4P79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.84 _cell.angle_gamma 90 _cell.entry_id 4P79 _cell.length_a 123.25 _cell.length_b 28.403 _cell.length_c 58.587 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P79 _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 52 1_555 A SG CYS 66 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C PHE 4 A PHE 0 1_555 A N MSE 5 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 5 A MSE 1 1_555 A N SER 6 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C PHE 15 A PHE 11 1_555 A N MSE 16 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 16 A MSE 12 1_555 A N SER 17 A SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 22 A LEU 18 1_555 A N MSE 23 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 23 A MSE 19 1_555 A N LEU 24 A LEU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C SER 71 A SER 67 1_555 A N MSE 72 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 72 A MSE 68 1_555 A N LEU 73 A LEU 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C LEU 85 A LEU 81 1_555 A N MSE 86 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 86 A MSE 82 1_555 A N ILE 87 A ILE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C GLY 100 A GLY 96 1_555 A N MSE 101 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 101 A MSE 97 1_555 A N VAL 102 A VAL 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C ASN 111 A ASN 107 1_555 A N MSE 112 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C MSE 112 A MSE 108 1_555 A N ASP 113 A ASP 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C GLY 135 A GLY 131 1_555 A N MSE 136 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C MSE 136 A MSE 132 1_555 A N VAL 137 A VAL 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 4P79 _atom_sites.fract_transf_matrix[1][1] 0.008114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001553 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 201 1 OLC OLC . C 2 OLC A 1 202 2 OLC OLC . D 3 HOH A 1 301 21 HOH HOH . D 3 HOH A 2 302 14 HOH HOH . D 3 HOH A 3 303 2 HOH HOH . D 3 HOH A 4 304 13 HOH HOH . D 3 HOH A 5 305 5 HOH HOH . D 3 HOH A 6 306 19 HOH HOH . D 3 HOH A 7 307 4 HOH HOH . D 3 HOH A 8 308 10 HOH HOH . D 3 HOH A 9 309 11 HOH HOH . D 3 HOH A 10 310 15 HOH HOH . D 3 HOH A 11 311 1 HOH HOH . D 3 HOH A 12 312 3 HOH HOH . D 3 HOH A 13 313 6 HOH HOH . D 3 HOH A 14 314 7 HOH HOH . D 3 HOH A 15 315 8 HOH HOH . D 3 HOH A 16 316 9 HOH HOH . D 3 HOH A 17 317 12 HOH HOH . D 3 HOH A 18 318 16 HOH HOH . D 3 HOH A 19 319 17 HOH HOH . D 3 HOH A 20 320 18 HOH HOH . D 3 HOH A 21 321 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . B 2 -6.021 1.625 27.026 1 47.04 ? C18 OLC 201 A 1 HETATM 2 C C10 OLC . . . B 2 -13.104 -1.611 23.14 1 58.03 ? C10 OLC 201 A 1 HETATM 3 C C9 OLC . . . B 2 -13.981 -1.805 22.159 1 50.58 ? C9 OLC 201 A 1 HETATM 4 C C17 OLC . . . B 2 -6.94 1.247 25.885 1 49.05 ? C17 OLC 201 A 1 HETATM 5 C C11 OLC . . . B 2 -12.087 -2.676 23.476 1 57.88 ? C11 OLC 201 A 1 HETATM 6 C C8 OLC . . . B 2 -13.962 -3.098 21.379 1 57.14 ? C8 OLC 201 A 1 HETATM 7 C C24 OLC . . . B 2 -22.368 -7.866 16.246 1 51.29 ? C24 OLC 201 A 1 HETATM 8 C C16 OLC . . . B 2 -8.374 1.086 26.371 1 48.31 ? C16 OLC 201 A 1 HETATM 9 C C12 OLC . . . B 2 -10.696 -2.053 23.485 1 56.65 ? C12 OLC 201 A 1 HETATM 10 C C7 OLC . . . B 2 -15.362 -3.697 21.368 1 47.51 ? C7 OLC 201 A 1 HETATM 11 C C15 OLC . . . B 2 -9.355 1.127 25.204 1 47.09 ? C15 OLC 201 A 1 HETATM 12 C C13 OLC . . . B 2 -10.662 -0.841 24.407 1 53.53 ? C13 OLC 201 A 1 HETATM 13 C C6 OLC . . . B 2 -16.301 -2.861 20.507 1 42.57 ? C6 OLC 201 A 1 HETATM 14 C C14 OLC . . . B 2 -9.306 -0.149 24.374 1 49.26 ? C14 OLC 201 A 1 HETATM 15 C C5 OLC . . . B 2 -17.743 -3.319 20.675 1 46.88 ? C5 OLC 201 A 1 HETATM 16 C C4 OLC . . . B 2 -17.848 -4.827 20.488 1 48.36 ? C4 OLC 201 A 1 HETATM 17 C C3 OLC . . . B 2 -19.302 -5.275 20.417 1 48.52 ? C3 OLC 201 A 1 HETATM 18 C C2 OLC . . . B 2 -19.385 -6.795 20.455 1 54.55 ? C2 OLC 201 A 1 HETATM 19 C C21 OLC . . . B 2 -22.561 -8.165 18.71 1 57.68 ? C21 OLC 201 A 1 HETATM 20 C C1 OLC . . . B 2 -20.813 -7.225 20.226 1 58.07 ? C1 OLC 201 A 1 HETATM 21 C C22 OLC . . . B 2 -22.654 -8.865 17.359 1 59.73 ? C22 OLC 201 A 1 HETATM 22 O O19 OLC . . . B 2 -21.627 -7.177 21.133 1 64.83 ? O19 OLC 201 A 1 HETATM 23 O O25 OLC . . . B 2 -22.639 -8.474 14.978 1 53.57 ? O25 OLC 201 A 1 HETATM 24 O O23 OLC . . . B 2 -21.691 -9.923 17.302 1 64.31 ? O23 OLC 201 A 1 HETATM 25 O O20 OLC . . . B 2 -21.224 -7.715 18.92 1 62.39 ? O20 OLC 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #