data_4P7R # _model_server_result.job_id A16VqakMZuynDwWRfstScQ _model_server_result.datetime_utc '2024-11-05 00:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 4P7R # _exptl.entry_id 4P7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P7R _cell.length_a 42.232 _cell.length_b 77.786 _cell.length_c 114.844 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O6 HO6 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O6 HO6 . sing 3 ? 2 4 3 NAG NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 704 NAG 2 n B NAG 2 B 2 NAG A 705 NAG 2 n B NAG 3 B 3 NAG A 706 NAG 2 n B NAG 4 B 4 NAG A 707 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O6 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale2 B O6 NAG . B NAG 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale3 B O6 NAG . B NAG 3 1_555 B C1 NAG . B NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4P7R _atom_sites.fract_transf_matrix[1][1] 0.023679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 701 701 EDO EDO . D 3 EDO A 1 702 702 EDO EDO . E 3 EDO A 1 703 703 EDO EDO . F 4 HOH A 1 801 801 HOH HOH . F 4 HOH A 2 802 802 HOH HOH . F 4 HOH A 3 803 803 HOH HOH . F 4 HOH A 4 804 804 HOH HOH . F 4 HOH A 5 805 805 HOH HOH . F 4 HOH A 6 806 806 HOH HOH . F 4 HOH A 7 807 807 HOH HOH . F 4 HOH A 8 808 808 HOH HOH . F 4 HOH A 9 809 809 HOH HOH . F 4 HOH A 10 810 810 HOH HOH . F 4 HOH A 11 811 811 HOH HOH . F 4 HOH A 12 812 812 HOH HOH . F 4 HOH A 13 813 813 HOH HOH . F 4 HOH A 14 814 814 HOH HOH . F 4 HOH A 15 815 815 HOH HOH . F 4 HOH A 16 816 816 HOH HOH . F 4 HOH A 17 817 817 HOH HOH . F 4 HOH A 18 818 818 HOH HOH . F 4 HOH A 19 819 819 HOH HOH . F 4 HOH A 20 820 820 HOH HOH . F 4 HOH A 21 821 821 HOH HOH . F 4 HOH A 22 822 822 HOH HOH . F 4 HOH A 23 823 823 HOH HOH . F 4 HOH A 24 824 824 HOH HOH . F 4 HOH A 25 825 825 HOH HOH . F 4 HOH A 26 826 826 HOH HOH . F 4 HOH A 27 827 827 HOH HOH . F 4 HOH A 28 828 828 HOH HOH . F 4 HOH A 29 829 829 HOH HOH . F 4 HOH A 30 830 830 HOH HOH . F 4 HOH A 31 831 831 HOH HOH . F 4 HOH A 32 832 832 HOH HOH . F 4 HOH A 33 833 833 HOH HOH . F 4 HOH A 34 834 834 HOH HOH . F 4 HOH A 35 835 835 HOH HOH . F 4 HOH A 36 836 836 HOH HOH . F 4 HOH A 37 837 837 HOH HOH . F 4 HOH A 38 838 838 HOH HOH . F 4 HOH A 39 839 839 HOH HOH . F 4 HOH A 40 840 840 HOH HOH . F 4 HOH A 41 841 841 HOH HOH . F 4 HOH A 42 842 842 HOH HOH . F 4 HOH A 43 843 843 HOH HOH . F 4 HOH A 44 844 844 HOH HOH . F 4 HOH A 45 845 845 HOH HOH . F 4 HOH A 46 846 846 HOH HOH . F 4 HOH A 47 847 847 HOH HOH . F 4 HOH A 48 848 848 HOH HOH . F 4 HOH A 49 849 849 HOH HOH . F 4 HOH A 50 850 850 HOH HOH . F 4 HOH A 51 851 851 HOH HOH . F 4 HOH A 52 852 852 HOH HOH . F 4 HOH A 53 853 853 HOH HOH . F 4 HOH A 54 854 854 HOH HOH . F 4 HOH A 55 855 855 HOH HOH . F 4 HOH A 56 856 856 HOH HOH . F 4 HOH A 57 857 858 HOH HOH . F 4 HOH A 58 858 859 HOH HOH . F 4 HOH A 59 859 860 HOH HOH . F 4 HOH A 60 860 861 HOH HOH . F 4 HOH A 61 861 862 HOH HOH . F 4 HOH A 62 862 863 HOH HOH . F 4 HOH A 63 863 864 HOH HOH . F 4 HOH A 64 864 865 HOH HOH . F 4 HOH A 65 865 866 HOH HOH . F 4 HOH A 66 866 867 HOH HOH . F 4 HOH A 67 867 868 HOH HOH . F 4 HOH A 68 868 869 HOH HOH . F 4 HOH A 69 869 870 HOH HOH . F 4 HOH A 70 870 857 HOH HOH . F 4 HOH A 71 871 871 HOH HOH . F 4 HOH A 72 872 872 HOH HOH . F 4 HOH A 73 873 873 HOH HOH . F 4 HOH A 74 874 874 HOH HOH . F 4 HOH A 75 875 875 HOH HOH . F 4 HOH A 76 876 876 HOH HOH . F 4 HOH A 77 877 877 HOH HOH . F 4 HOH A 78 878 878 HOH HOH . F 4 HOH A 79 879 879 HOH HOH . F 4 HOH A 80 880 880 HOH HOH . F 4 HOH A 81 881 881 HOH HOH . F 4 HOH A 82 882 882 HOH HOH . F 4 HOH A 83 883 883 HOH HOH . F 4 HOH A 84 884 884 HOH HOH . F 4 HOH A 85 885 885 HOH HOH . F 4 HOH A 86 886 886 HOH HOH . F 4 HOH A 87 887 887 HOH HOH . F 4 HOH A 88 888 888 HOH HOH . F 4 HOH A 89 889 889 HOH HOH . F 4 HOH A 90 890 890 HOH HOH . F 4 HOH A 91 891 891 HOH HOH . F 4 HOH A 92 892 892 HOH HOH . F 4 HOH A 93 893 893 HOH HOH . F 4 HOH A 94 894 894 HOH HOH . F 4 HOH A 95 895 895 HOH HOH . F 4 HOH A 96 896 896 HOH HOH . F 4 HOH A 97 897 897 HOH HOH . F 4 HOH A 98 898 898 HOH HOH . F 4 HOH A 99 899 899 HOH HOH . F 4 HOH A 100 900 900 HOH HOH . F 4 HOH A 101 901 901 HOH HOH . F 4 HOH A 102 902 902 HOH HOH . F 4 HOH A 103 903 903 HOH HOH . F 4 HOH A 104 904 904 HOH HOH . F 4 HOH A 105 905 905 HOH HOH . F 4 HOH A 106 906 906 HOH HOH . F 4 HOH A 107 907 907 HOH HOH . F 4 HOH A 108 908 908 HOH HOH . F 4 HOH A 109 909 909 HOH HOH . F 4 HOH A 110 910 910 HOH HOH . F 4 HOH A 111 911 911 HOH HOH . F 4 HOH A 112 912 912 HOH HOH . F 4 HOH A 113 913 913 HOH HOH . F 4 HOH A 114 914 914 HOH HOH . F 4 HOH A 115 915 915 HOH HOH . F 4 HOH A 116 916 916 HOH HOH . F 4 HOH A 117 917 917 HOH HOH . F 4 HOH A 118 918 918 HOH HOH . F 4 HOH A 119 919 919 HOH HOH . F 4 HOH A 120 920 920 HOH HOH . F 4 HOH A 121 921 921 HOH HOH . F 4 HOH A 122 922 922 HOH HOH . F 4 HOH A 123 923 923 HOH HOH . F 4 HOH A 124 924 924 HOH HOH . F 4 HOH A 125 925 925 HOH HOH . F 4 HOH A 126 926 926 HOH HOH . F 4 HOH A 127 927 927 HOH HOH . F 4 HOH A 128 928 928 HOH HOH . F 4 HOH A 129 929 929 HOH HOH . F 4 HOH A 130 930 930 HOH HOH . F 4 HOH A 131 931 931 HOH HOH . F 4 HOH A 132 932 932 HOH HOH . F 4 HOH A 133 933 933 HOH HOH . F 4 HOH A 134 934 934 HOH HOH . F 4 HOH A 135 935 935 HOH HOH . F 4 HOH A 136 936 936 HOH HOH . F 4 HOH A 137 937 937 HOH HOH . F 4 HOH A 138 938 938 HOH HOH . F 4 HOH A 139 939 939 HOH HOH . F 4 HOH A 140 940 940 HOH HOH . F 4 HOH A 141 941 941 HOH HOH . F 4 HOH A 142 942 942 HOH HOH . F 4 HOH A 143 943 943 HOH HOH . F 4 HOH A 144 944 944 HOH HOH . F 4 HOH A 145 945 945 HOH HOH . F 4 HOH A 146 946 946 HOH HOH . F 4 HOH A 147 947 947 HOH HOH . F 4 HOH A 148 948 948 HOH HOH . F 4 HOH A 149 949 949 HOH HOH . F 4 HOH A 150 950 950 HOH HOH . F 4 HOH A 151 951 951 HOH HOH . F 4 HOH A 152 952 952 HOH HOH . F 4 HOH A 153 953 953 HOH HOH . F 4 HOH A 154 954 954 HOH HOH . F 4 HOH A 155 955 955 HOH HOH . F 4 HOH A 156 956 956 HOH HOH . F 4 HOH A 157 957 957 HOH HOH . F 4 HOH A 158 958 958 HOH HOH . F 4 HOH A 159 959 959 HOH HOH . F 4 HOH A 160 960 960 HOH HOH . F 4 HOH A 161 961 961 HOH HOH . F 4 HOH A 162 962 962 HOH HOH . F 4 HOH A 163 963 963 HOH HOH . F 4 HOH A 164 964 964 HOH HOH . F 4 HOH A 165 965 965 HOH HOH . F 4 HOH A 166 966 966 HOH HOH . F 4 HOH A 167 967 967 HOH HOH . F 4 HOH A 168 968 968 HOH HOH . F 4 HOH A 169 969 969 HOH HOH . F 4 HOH A 170 970 970 HOH HOH . F 4 HOH A 171 971 971 HOH HOH . F 4 HOH A 172 972 972 HOH HOH . F 4 HOH A 173 973 973 HOH HOH . F 4 HOH A 174 974 974 HOH HOH . F 4 HOH A 175 975 975 HOH HOH . F 4 HOH A 176 976 976 HOH HOH . F 4 HOH A 177 977 977 HOH HOH . F 4 HOH A 178 978 978 HOH HOH . F 4 HOH A 179 979 979 HOH HOH . F 4 HOH A 180 980 980 HOH HOH . F 4 HOH A 181 981 981 HOH HOH . F 4 HOH A 182 982 982 HOH HOH . F 4 HOH A 183 983 983 HOH HOH . F 4 HOH A 184 984 984 HOH HOH . F 4 HOH A 185 985 985 HOH HOH . F 4 HOH A 186 986 986 HOH HOH . F 4 HOH A 187 987 987 HOH HOH . F 4 HOH A 188 988 988 HOH HOH . F 4 HOH A 189 989 989 HOH HOH . F 4 HOH A 190 990 990 HOH HOH . F 4 HOH A 191 991 991 HOH HOH . F 4 HOH A 192 992 992 HOH HOH . F 4 HOH A 193 993 993 HOH HOH . F 4 HOH A 194 994 994 HOH HOH . F 4 HOH A 195 995 995 HOH HOH . F 4 HOH A 196 996 996 HOH HOH . F 4 HOH A 197 997 997 HOH HOH . F 4 HOH A 198 998 998 HOH HOH . F 4 HOH A 199 999 999 HOH HOH . F 4 HOH A 200 1000 1000 HOH HOH . F 4 HOH A 201 1001 1001 HOH HOH . F 4 HOH A 202 1002 1002 HOH HOH . F 4 HOH A 203 1003 1003 HOH HOH . F 4 HOH A 204 1004 1004 HOH HOH . F 4 HOH A 205 1005 1005 HOH HOH . F 4 HOH A 206 1006 1006 HOH HOH . F 4 HOH A 207 1007 1007 HOH HOH . F 4 HOH A 208 1008 1008 HOH HOH . F 4 HOH A 209 1009 1009 HOH HOH . F 4 HOH A 210 1010 1010 HOH HOH . F 4 HOH A 211 1011 1011 HOH HOH . F 4 HOH A 212 1012 1012 HOH HOH . F 4 HOH A 213 1013 1013 HOH HOH . F 4 HOH A 214 1014 1014 HOH HOH . F 4 HOH A 215 1015 1015 HOH HOH . F 4 HOH A 216 1016 1016 HOH HOH . F 4 HOH A 217 1017 1017 HOH HOH . F 4 HOH A 218 1018 1018 HOH HOH . F 4 HOH A 219 1019 1019 HOH HOH . F 4 HOH A 220 1020 1020 HOH HOH . F 4 HOH A 221 1021 1021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 27.832 61.447 143.436 1 39.46 ? C1 EDO 703 A 1 HETATM 2 O O1 EDO . . . E 3 28.889 61.203 142.507 1 32.58 ? O1 EDO 703 A 1 HETATM 3 C C2 EDO . . . E 3 26.831 60.3 143.377 1 45.51 ? C2 EDO 703 A 1 HETATM 4 O O2 EDO . . . E 3 27.539 59.065 143.227 1 49.65 ? O2 EDO 703 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #