data_4P7U # _model_server_result.job_id e-wuxD1aocjNJfIOf652Kw _model_server_result.datetime_utc '2024-10-20 19:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4P7U # _exptl.entry_id 4P7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P7U _cell.length_a 33.574 _cell.length_b 40.463 _cell.length_c 75.837 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 28 1_555 A SG CYS 37 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 7 A CYS 31 1_555 A SG CYS 24 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 14 A CYS 38 1_555 A SG CYS 20 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 A SG CYS 30 A CYS 54 1_555 A SG CYS 54 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 A SG CYS 74 A CYS 98 1_555 A SG CYS 89 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 91 A CYS 115 1_555 A SG CYS 96 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C8 H11 N O3 S' _chem_comp.formula_weight 201.243 _chem_comp.id 1PS _chem_comp.mon_nstd_flag . _chem_comp.name 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1-(3-SULFOPROPYL) PYRIDINIUM;PPS' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 1PS sing 1 n y N1 C3 1PS doub 2 n y N1 C6 1PS sing 3 n n C1 C2 1PS doub 4 n y C1 H1 1PS sing 5 n n C2 C5 1PS sing 6 n y C2 H2 1PS sing 7 n n C3 C4 1PS sing 8 n y C3 H3 1PS sing 9 n n C4 C5 1PS doub 10 n y C4 H4 1PS sing 11 n n C5 H5 1PS sing 12 n n C6 C7 1PS sing 13 n n C6 H61 1PS sing 14 n n C6 H62 1PS sing 15 n n C7 C8 1PS sing 16 n n C7 H71 1PS sing 17 n n C7 H72 1PS sing 18 n n C8 S1 1PS sing 19 n n C8 H81 1PS sing 20 n n C8 H82 1PS sing 21 n n S1 O1 1PS sing 22 n n S1 O2 1PS doub 23 n n S1 O3 1PS doub 24 n n # _atom_sites.entry_id 4P7U _atom_sites.fract_transf_matrix[1][1] 0.029785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PS A 1 201 1 1PS 1PS . C 3 HOH A 1 301 80 HOH HOH . C 3 HOH A 2 302 76 HOH HOH . C 3 HOH A 3 303 67 HOH HOH . C 3 HOH A 4 304 23 HOH HOH . C 3 HOH A 5 305 44 HOH HOH . C 3 HOH A 6 306 83 HOH HOH . C 3 HOH A 7 307 17 HOH HOH . C 3 HOH A 8 308 90 HOH HOH . C 3 HOH A 9 309 38 HOH HOH . C 3 HOH A 10 310 69 HOH HOH . C 3 HOH A 11 311 55 HOH HOH . C 3 HOH A 12 312 47 HOH HOH . C 3 HOH A 13 313 11 HOH HOH . C 3 HOH A 14 314 45 HOH HOH . C 3 HOH A 15 315 21 HOH HOH . C 3 HOH A 16 316 39 HOH HOH . C 3 HOH A 17 317 59 HOH HOH . C 3 HOH A 18 318 61 HOH HOH . C 3 HOH A 19 319 20 HOH HOH . C 3 HOH A 20 320 71 HOH HOH . C 3 HOH A 21 321 30 HOH HOH . C 3 HOH A 22 322 28 HOH HOH . C 3 HOH A 23 323 8 HOH HOH . C 3 HOH A 24 324 10 HOH HOH . C 3 HOH A 25 325 58 HOH HOH . C 3 HOH A 26 326 50 HOH HOH . C 3 HOH A 27 327 53 HOH HOH . C 3 HOH A 28 328 13 HOH HOH . C 3 HOH A 29 329 33 HOH HOH . C 3 HOH A 30 330 16 HOH HOH . C 3 HOH A 31 331 32 HOH HOH . C 3 HOH A 32 332 9 HOH HOH . C 3 HOH A 33 333 19 HOH HOH . C 3 HOH A 34 334 24 HOH HOH . C 3 HOH A 35 335 57 HOH HOH . C 3 HOH A 36 336 25 HOH HOH . C 3 HOH A 37 337 29 HOH HOH . C 3 HOH A 38 338 22 HOH HOH . C 3 HOH A 39 339 49 HOH HOH . C 3 HOH A 40 340 87 HOH HOH . C 3 HOH A 41 341 78 HOH HOH . C 3 HOH A 42 342 27 HOH HOH . C 3 HOH A 43 343 86 HOH HOH . C 3 HOH A 44 344 88 HOH HOH . C 3 HOH A 45 345 1 HOH HOH . C 3 HOH A 46 346 2 HOH HOH . C 3 HOH A 47 347 3 HOH HOH . C 3 HOH A 48 348 4 HOH HOH . C 3 HOH A 49 349 5 HOH HOH . C 3 HOH A 50 350 6 HOH HOH . C 3 HOH A 51 351 7 HOH HOH . C 3 HOH A 52 352 12 HOH HOH . C 3 HOH A 53 353 14 HOH HOH . C 3 HOH A 54 354 15 HOH HOH . C 3 HOH A 55 355 18 HOH HOH . C 3 HOH A 56 356 26 HOH HOH . C 3 HOH A 57 357 31 HOH HOH . C 3 HOH A 58 358 34 HOH HOH . C 3 HOH A 59 359 35 HOH HOH . C 3 HOH A 60 360 36 HOH HOH . C 3 HOH A 61 361 37 HOH HOH . C 3 HOH A 62 362 40 HOH HOH . C 3 HOH A 63 363 41 HOH HOH . C 3 HOH A 64 364 42 HOH HOH . C 3 HOH A 65 365 43 HOH HOH . C 3 HOH A 66 366 46 HOH HOH . C 3 HOH A 67 367 48 HOH HOH . C 3 HOH A 68 368 51 HOH HOH . C 3 HOH A 69 369 52 HOH HOH . C 3 HOH A 70 370 54 HOH HOH . C 3 HOH A 71 371 56 HOH HOH . C 3 HOH A 72 372 60 HOH HOH . C 3 HOH A 73 373 62 HOH HOH . C 3 HOH A 74 374 63 HOH HOH . C 3 HOH A 75 375 64 HOH HOH . C 3 HOH A 76 376 65 HOH HOH . C 3 HOH A 77 377 66 HOH HOH . C 3 HOH A 78 378 68 HOH HOH . C 3 HOH A 79 379 70 HOH HOH . C 3 HOH A 80 380 72 HOH HOH . C 3 HOH A 81 381 73 HOH HOH . C 3 HOH A 82 382 74 HOH HOH . C 3 HOH A 83 383 75 HOH HOH . C 3 HOH A 84 384 77 HOH HOH . C 3 HOH A 85 385 79 HOH HOH . C 3 HOH A 86 386 81 HOH HOH . C 3 HOH A 87 387 82 HOH HOH . C 3 HOH A 88 388 84 HOH HOH . C 3 HOH A 89 389 85 HOH HOH . C 3 HOH A 90 390 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1PS . A . B 2 -1.4 -6.812 80.028 0.3 31.69 1 N1 1PS 201 A 1 HETATM 2 N N1 1PS . B . B 2 -1.485 -6.738 79.994 0.48 31.76 1 N1 1PS 201 A 1 HETATM 3 C C1 1PS . A . B 2 -0.178 -6.299 80.227 0.3 26.88 ? C1 1PS 201 A 1 HETATM 4 C C1 1PS . B . B 2 -0.254 -6.242 80.195 0.48 26.92 ? C1 1PS 201 A 1 HETATM 5 C C2 1PS . A . B 2 0.592 -6.675 81.347 0.3 27.09 ? C2 1PS 201 A 1 HETATM 6 C C2 1PS . B . B 2 0.536 -6.67 81.279 0.48 27.14 ? C2 1PS 201 A 1 HETATM 7 C C3 1PS . A . B 2 -1.942 -7.706 80.867 0.3 26.72 ? C3 1PS 201 A 1 HETATM 8 C C3 1PS . B . B 2 -2.022 -7.662 80.804 0.48 26.72 ? C3 1PS 201 A 1 HETATM 9 C C4 1PS . A . B 2 -1.232 -8.133 82.007 0.3 28.5 ? C4 1PS 201 A 1 HETATM 10 C C4 1PS . B . B 2 -1.29 -8.143 81.905 0.48 28.41 ? C4 1PS 201 A 1 HETATM 11 C C5 1PS . A . B 2 0.053 -7.611 82.257 0.3 24.3 ? C5 1PS 201 A 1 HETATM 12 C C5 1PS . B . B 2 0.003 -7.641 82.156 0.48 24.33 ? C5 1PS 201 A 1 HETATM 13 C C6 1PS . A . B 2 -2.16 -6.402 78.855 0.3 32.02 ? C6 1PS 201 A 1 HETATM 14 C C6 1PS . B . B 2 -2.267 -6.267 78.86 0.48 32 ? C6 1PS 201 A 1 HETATM 15 C C7 1PS . A . B 2 -1.898 -7.428 77.78 0.3 37.63 ? C7 1PS 201 A 1 HETATM 16 C C7 1PS . B . B 2 -2.422 -7.397 77.873 0.48 39.24 ? C7 1PS 201 A 1 HETATM 17 C C8 1PS . A . B 2 -2.817 -7.222 76.607 0.3 39.68 ? C8 1PS 201 A 1 HETATM 18 C C8 1PS . B . B 2 -1.088 -7.695 77.241 0.48 37.7 ? C8 1PS 201 A 1 HETATM 19 S S1 1PS . A . B 2 -2.063 -7.975 75.196 0.3 52.35 ? S1 1PS 201 A 1 HETATM 20 S S1 1PS . B . B 2 -1.347 -8.158 75.558 0.48 41.12 ? S1 1PS 201 A 1 HETATM 21 O O1 1PS . A . B 2 -2.132 -9.424 75.255 0.3 55.43 ? O1 1PS 201 A 1 HETATM 22 O O1 1PS . B . B 2 -1.394 -9.6 75.394 0.48 53.31 ? O1 1PS 201 A 1 HETATM 23 O O2 1PS . A . B 2 -0.63 -7.784 75.213 0.3 42.04 ? O2 1PS 201 A 1 HETATM 24 O O2 1PS . B . B 2 -0.209 -7.821 74.731 0.48 44.18 ? O2 1PS 201 A 1 HETATM 25 O O3 1PS . A . B 2 -2.645 -7.46 73.963 0.3 54.31 -1 O3 1PS 201 A 1 HETATM 26 O O3 1PS . B . B 2 -2.562 -7.519 75.065 0.48 51.84 -1 O3 1PS 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #