data_4P7Y # _model_server_result.job_id Ze4cnCe9AqhRpqW8QUUWYw _model_server_result.datetime_utc '2024-11-04 22:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4P7Y # _exptl.entry_id 4P7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P7Y _cell.length_a 57.546 _cell.length_b 124.531 _cell.length_c 129.874 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P7Y _symmetry.cell_setting . _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 2 A ASP 3 1_555 A N CSO 3 A CSO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSO 3 A CSO 4 1_555 A N ARG 4 A ARG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C THR 208 A THR 209 1_555 A N LLP 209 A LLP 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C LLP 209 A LLP 210 1_555 A N TYR 210 A TYR 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4P7Y _atom_sites.fract_transf_matrix[1][1] 0.017378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 401 2 PEG PEG . C 3 1PE A 1 402 1 1PE 1PE . D 4 HOH A 1 501 129 HOH HOH . D 4 HOH A 2 502 113 HOH HOH . D 4 HOH A 3 503 120 HOH HOH . D 4 HOH A 4 504 102 HOH HOH . D 4 HOH A 5 505 203 HOH HOH . D 4 HOH A 6 506 4 HOH HOH . D 4 HOH A 7 507 127 HOH HOH . D 4 HOH A 8 508 42 HOH HOH . D 4 HOH A 9 509 92 HOH HOH . D 4 HOH A 10 510 83 HOH HOH . D 4 HOH A 11 511 119 HOH HOH . D 4 HOH A 12 512 94 HOH HOH . D 4 HOH A 13 513 68 HOH HOH . D 4 HOH A 14 514 93 HOH HOH . D 4 HOH A 15 515 147 HOH HOH . D 4 HOH A 16 516 23 HOH HOH . D 4 HOH A 17 517 122 HOH HOH . D 4 HOH A 18 518 180 HOH HOH . D 4 HOH A 19 519 132 HOH HOH . D 4 HOH A 20 520 22 HOH HOH . D 4 HOH A 21 521 99 HOH HOH . D 4 HOH A 22 522 107 HOH HOH . D 4 HOH A 23 523 58 HOH HOH . D 4 HOH A 24 524 52 HOH HOH . D 4 HOH A 25 525 131 HOH HOH . D 4 HOH A 26 526 6 HOH HOH . D 4 HOH A 27 527 200 HOH HOH . D 4 HOH A 28 528 38 HOH HOH . D 4 HOH A 29 529 88 HOH HOH . D 4 HOH A 30 530 47 HOH HOH . D 4 HOH A 31 531 41 HOH HOH . D 4 HOH A 32 532 13 HOH HOH . D 4 HOH A 33 533 185 HOH HOH . D 4 HOH A 34 534 98 HOH HOH . D 4 HOH A 35 535 29 HOH HOH . D 4 HOH A 36 536 81 HOH HOH . D 4 HOH A 37 537 7 HOH HOH . D 4 HOH A 38 538 69 HOH HOH . D 4 HOH A 39 539 134 HOH HOH . D 4 HOH A 40 540 44 HOH HOH . D 4 HOH A 41 541 8 HOH HOH . D 4 HOH A 42 542 48 HOH HOH . D 4 HOH A 43 543 32 HOH HOH . D 4 HOH A 44 544 124 HOH HOH . D 4 HOH A 45 545 63 HOH HOH . D 4 HOH A 46 546 84 HOH HOH . D 4 HOH A 47 547 139 HOH HOH . D 4 HOH A 48 548 165 HOH HOH . D 4 HOH A 49 549 75 HOH HOH . D 4 HOH A 50 550 65 HOH HOH . D 4 HOH A 51 551 34 HOH HOH . D 4 HOH A 52 552 173 HOH HOH . D 4 HOH A 53 553 148 HOH HOH . D 4 HOH A 54 554 71 HOH HOH . D 4 HOH A 55 555 108 HOH HOH . D 4 HOH A 56 556 9 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 33 HOH HOH . D 4 HOH A 59 559 109 HOH HOH . D 4 HOH A 60 560 112 HOH HOH . D 4 HOH A 61 561 154 HOH HOH . D 4 HOH A 62 562 15 HOH HOH . D 4 HOH A 63 563 183 HOH HOH . D 4 HOH A 64 564 164 HOH HOH . D 4 HOH A 65 565 170 HOH HOH . D 4 HOH A 66 566 184 HOH HOH . D 4 HOH A 67 567 181 HOH HOH . D 4 HOH A 68 568 195 HOH HOH . D 4 HOH A 69 569 182 HOH HOH . D 4 HOH A 70 570 151 HOH HOH . D 4 HOH A 71 571 172 HOH HOH . D 4 HOH A 72 572 187 HOH HOH . D 4 HOH A 73 573 174 HOH HOH . D 4 HOH A 74 574 171 HOH HOH . D 4 HOH A 75 575 160 HOH HOH . D 4 HOH A 76 576 163 HOH HOH . D 4 HOH A 77 577 177 HOH HOH . D 4 HOH A 78 578 157 HOH HOH . D 4 HOH A 79 579 95 HOH HOH . D 4 HOH A 80 580 176 HOH HOH . D 4 HOH A 81 581 1 HOH HOH . D 4 HOH A 82 582 2 HOH HOH . D 4 HOH A 83 583 3 HOH HOH . D 4 HOH A 84 584 5 HOH HOH . D 4 HOH A 85 585 10 HOH HOH . D 4 HOH A 86 586 11 HOH HOH . D 4 HOH A 87 587 12 HOH HOH . D 4 HOH A 88 588 14 HOH HOH . D 4 HOH A 89 589 16 HOH HOH . D 4 HOH A 90 590 17 HOH HOH . D 4 HOH A 91 591 18 HOH HOH . D 4 HOH A 92 592 19 HOH HOH . D 4 HOH A 93 593 20 HOH HOH . D 4 HOH A 94 594 21 HOH HOH . D 4 HOH A 95 595 24 HOH HOH . D 4 HOH A 96 596 25 HOH HOH . D 4 HOH A 97 597 26 HOH HOH . D 4 HOH A 98 598 27 HOH HOH . D 4 HOH A 99 599 28 HOH HOH . D 4 HOH A 100 600 30 HOH HOH . D 4 HOH A 101 601 31 HOH HOH . D 4 HOH A 102 602 35 HOH HOH . D 4 HOH A 103 603 36 HOH HOH . D 4 HOH A 104 604 37 HOH HOH . D 4 HOH A 105 605 39 HOH HOH . D 4 HOH A 106 606 40 HOH HOH . D 4 HOH A 107 607 43 HOH HOH . D 4 HOH A 108 608 45 HOH HOH . D 4 HOH A 109 609 46 HOH HOH . D 4 HOH A 110 610 49 HOH HOH . D 4 HOH A 111 611 50 HOH HOH . D 4 HOH A 112 612 51 HOH HOH . D 4 HOH A 113 613 53 HOH HOH . D 4 HOH A 114 614 54 HOH HOH . D 4 HOH A 115 615 55 HOH HOH . D 4 HOH A 116 616 56 HOH HOH . D 4 HOH A 117 617 59 HOH HOH . D 4 HOH A 118 618 60 HOH HOH . D 4 HOH A 119 619 61 HOH HOH . D 4 HOH A 120 620 62 HOH HOH . D 4 HOH A 121 621 64 HOH HOH . D 4 HOH A 122 622 66 HOH HOH . D 4 HOH A 123 623 67 HOH HOH . D 4 HOH A 124 624 70 HOH HOH . D 4 HOH A 125 625 72 HOH HOH . D 4 HOH A 126 626 73 HOH HOH . D 4 HOH A 127 627 74 HOH HOH . D 4 HOH A 128 628 76 HOH HOH . D 4 HOH A 129 629 77 HOH HOH . D 4 HOH A 130 630 78 HOH HOH . D 4 HOH A 131 631 79 HOH HOH . D 4 HOH A 132 632 80 HOH HOH . D 4 HOH A 133 633 82 HOH HOH . D 4 HOH A 134 634 85 HOH HOH . D 4 HOH A 135 635 86 HOH HOH . D 4 HOH A 136 636 87 HOH HOH . D 4 HOH A 137 637 89 HOH HOH . D 4 HOH A 138 638 90 HOH HOH . D 4 HOH A 139 639 91 HOH HOH . D 4 HOH A 140 640 96 HOH HOH . D 4 HOH A 141 641 97 HOH HOH . D 4 HOH A 142 642 100 HOH HOH . D 4 HOH A 143 643 101 HOH HOH . D 4 HOH A 144 644 103 HOH HOH . D 4 HOH A 145 645 104 HOH HOH . D 4 HOH A 146 646 105 HOH HOH . D 4 HOH A 147 647 106 HOH HOH . D 4 HOH A 148 648 110 HOH HOH . D 4 HOH A 149 649 111 HOH HOH . D 4 HOH A 150 650 114 HOH HOH . D 4 HOH A 151 651 115 HOH HOH . D 4 HOH A 152 652 116 HOH HOH . D 4 HOH A 153 653 117 HOH HOH . D 4 HOH A 154 654 118 HOH HOH . D 4 HOH A 155 655 121 HOH HOH . D 4 HOH A 156 656 123 HOH HOH . D 4 HOH A 157 657 125 HOH HOH . D 4 HOH A 158 658 126 HOH HOH . D 4 HOH A 159 659 128 HOH HOH . D 4 HOH A 160 660 130 HOH HOH . D 4 HOH A 161 661 133 HOH HOH . D 4 HOH A 162 662 135 HOH HOH . D 4 HOH A 163 663 136 HOH HOH . D 4 HOH A 164 664 137 HOH HOH . D 4 HOH A 165 665 138 HOH HOH . D 4 HOH A 166 666 140 HOH HOH . D 4 HOH A 167 667 141 HOH HOH . D 4 HOH A 168 668 142 HOH HOH . D 4 HOH A 169 669 143 HOH HOH . D 4 HOH A 170 670 144 HOH HOH . D 4 HOH A 171 671 145 HOH HOH . D 4 HOH A 172 672 146 HOH HOH . D 4 HOH A 173 673 149 HOH HOH . D 4 HOH A 174 674 150 HOH HOH . D 4 HOH A 175 675 152 HOH HOH . D 4 HOH A 176 676 153 HOH HOH . D 4 HOH A 177 677 155 HOH HOH . D 4 HOH A 178 678 156 HOH HOH . D 4 HOH A 179 679 158 HOH HOH . D 4 HOH A 180 680 159 HOH HOH . D 4 HOH A 181 681 161 HOH HOH . D 4 HOH A 182 682 162 HOH HOH . D 4 HOH A 183 683 166 HOH HOH . D 4 HOH A 184 684 167 HOH HOH . D 4 HOH A 185 685 168 HOH HOH . D 4 HOH A 186 686 169 HOH HOH . D 4 HOH A 187 687 175 HOH HOH . D 4 HOH A 188 688 178 HOH HOH . D 4 HOH A 189 689 179 HOH HOH . D 4 HOH A 190 690 186 HOH HOH . D 4 HOH A 191 691 188 HOH HOH . D 4 HOH A 192 692 189 HOH HOH . D 4 HOH A 193 693 190 HOH HOH . D 4 HOH A 194 694 191 HOH HOH . D 4 HOH A 195 695 192 HOH HOH . D 4 HOH A 196 696 193 HOH HOH . D 4 HOH A 197 697 194 HOH HOH . D 4 HOH A 198 698 196 HOH HOH . D 4 HOH A 199 699 197 HOH HOH . D 4 HOH A 200 700 198 HOH HOH . D 4 HOH A 201 701 199 HOH HOH . D 4 HOH A 202 702 201 HOH HOH . D 4 HOH A 203 703 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . C 3 -6.145 15.994 35.068 1 59.31 ? OH2 1PE 402 A 1 HETATM 2 C C12 1PE . . . C 3 -6.937 16.926 34.323 1 58.44 ? C12 1PE 402 A 1 HETATM 3 C C22 1PE . . . C 3 -6.023 17.753 33.442 1 57.19 ? C22 1PE 402 A 1 HETATM 4 O OH3 1PE . . . C 3 -6.58 17.95 32.129 1 59.24 ? OH3 1PE 402 A 1 HETATM 5 C C13 1PE . . . C 3 -6.684 17.166 29.823 1 52.78 ? C13 1PE 402 A 1 HETATM 6 C C23 1PE . . . C 3 -6.392 16.83 31.262 1 54.62 ? C23 1PE 402 A 1 HETATM 7 O OH4 1PE . . . C 3 -6.412 16.013 29.022 1 51.37 ? OH4 1PE 402 A 1 HETATM 8 C C14 1PE . . . C 3 -7.376 13.962 28.271 1 53.3 ? C14 1PE 402 A 1 HETATM 9 C C24 1PE . . . C 3 -7.642 15.34 28.786 1 51.97 ? C24 1PE 402 A 1 HETATM 10 O OH5 1PE . . . C 3 -8.533 13.114 28.395 1 59.6 ? OH5 1PE 402 A 1 HETATM 11 C C15 1PE . . . C 3 -7.774 11.322 29.902 1 64.15 ? C15 1PE 402 A 1 HETATM 12 C C25 1PE . . . C 3 -8.186 11.72 28.484 1 59.1 ? C25 1PE 402 A 1 HETATM 13 O OH6 1PE . . . C 3 -6.669 10.408 29.918 1 62.15 ? OH6 1PE 402 A 1 HETATM 14 C C16 1PE . . . C 3 -4.725 9.86 31.314 1 62.7 ? C16 1PE 402 A 1 HETATM 15 C C26 1PE . . . C 3 -5.444 10.927 30.466 1 59.06 ? C26 1PE 402 A 1 HETATM 16 O OH7 1PE . . . C 3 -4.713 10.111 32.736 1 65.62 ? OH7 1PE 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #