data_4P8C # _model_server_result.job_id Bgty2Fe2V90LuJazeLhQTA _model_server_result.datetime_utc '2024-11-14 04:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 4P8C # _exptl.entry_id 4P8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.253 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.17 _cell.angle_gamma 90 _cell.entry_id 4P8C _cell.length_a 77.678 _cell.length_b 84.158 _cell.length_c 80.905 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8C _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H20 O4' _chem_comp.formula_weight 192.253 _chem_comp.id 2J3 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 2J3 sing 1 n n C14 C7 2J3 sing 2 n n C16 C3 2J3 sing 3 n n C3 C4 2J3 sing 4 n n C4 O2 2J3 sing 5 n n C7 C8 2J3 sing 6 n n C7 O3 2J3 sing 7 n n C6 O3 2J3 sing 8 n n C6 C5 2J3 sing 9 n n C8 O4 2J3 sing 10 n n O2 C5 2J3 sing 11 n n C5 C15 2J3 sing 12 n n O1 H1 2J3 sing 13 n n C3 H2 2J3 sing 14 n n C4 H3 2J3 sing 15 n n C4 H4 2J3 sing 16 n n O4 H5 2J3 sing 17 n n C5 H6 2J3 sing 18 n n C16 H7 2J3 sing 19 n n C16 H8 2J3 sing 20 n n C16 H9 2J3 sing 21 n n C15 H10 2J3 sing 22 n n C15 H11 2J3 sing 23 n n C15 H12 2J3 sing 24 n n C6 H13 2J3 sing 25 n n C6 H14 2J3 sing 26 n n C7 H15 2J3 sing 27 n n C14 H16 2J3 sing 28 n n C14 H17 2J3 sing 29 n n C14 H18 2J3 sing 30 n n C8 H19 2J3 sing 31 n n C8 H20 2J3 sing 32 n n # _atom_sites.entry_id 4P8C _atom_sites.fract_transf_matrix[1][1] 0.012874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003013 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 Y22 A 1 502 550 Y22 Y22 . E 4 IMD A 1 503 555 IMD IMD . F 5 2J3 A 1 504 560 2J3 23B . G 2 FAD B 1 501 501 FAD FAD . H 3 Y22 B 1 502 550 Y22 Y22 . I 6 HOH A 1 601 40 HOH HOH . I 6 HOH A 2 602 235 HOH HOH . I 6 HOH A 3 603 105 HOH HOH . I 6 HOH A 4 604 233 HOH HOH . I 6 HOH A 5 605 116 HOH HOH . I 6 HOH A 6 606 57 HOH HOH . I 6 HOH A 7 607 32 HOH HOH . I 6 HOH A 8 608 218 HOH HOH . I 6 HOH A 9 609 80 HOH HOH . I 6 HOH A 10 610 13 HOH HOH . I 6 HOH A 11 611 85 HOH HOH . I 6 HOH A 12 612 231 HOH HOH . I 6 HOH A 13 613 4 HOH HOH . I 6 HOH A 14 614 110 HOH HOH . I 6 HOH A 15 615 69 HOH HOH . I 6 HOH A 16 616 156 HOH HOH . I 6 HOH A 17 617 130 HOH HOH . I 6 HOH A 18 618 50 HOH HOH . I 6 HOH A 19 619 155 HOH HOH . I 6 HOH A 20 620 164 HOH HOH . I 6 HOH A 21 621 78 HOH HOH . I 6 HOH A 22 622 226 HOH HOH . I 6 HOH A 23 623 61 HOH HOH . I 6 HOH A 24 624 6 HOH HOH . I 6 HOH A 25 625 90 HOH HOH . I 6 HOH A 26 626 111 HOH HOH . I 6 HOH A 27 627 197 HOH HOH . I 6 HOH A 28 628 209 HOH HOH . I 6 HOH A 29 629 46 HOH HOH . I 6 HOH A 30 630 53 HOH HOH . I 6 HOH A 31 631 93 HOH HOH . I 6 HOH A 32 632 38 HOH HOH . I 6 HOH A 33 633 58 HOH HOH . I 6 HOH A 34 634 1 HOH HOH . I 6 HOH A 35 635 2 HOH HOH . I 6 HOH A 36 636 3 HOH HOH . I 6 HOH A 37 637 7 HOH HOH . I 6 HOH A 38 638 8 HOH HOH . I 6 HOH A 39 639 9 HOH HOH . I 6 HOH A 40 640 10 HOH HOH . I 6 HOH A 41 641 11 HOH HOH . I 6 HOH A 42 642 17 HOH HOH . I 6 HOH A 43 643 18 HOH HOH . I 6 HOH A 44 644 19 HOH HOH . I 6 HOH A 45 645 22 HOH HOH . I 6 HOH A 46 646 23 HOH HOH . I 6 HOH A 47 647 24 HOH HOH . I 6 HOH A 48 648 25 HOH HOH . I 6 HOH A 49 649 26 HOH HOH . I 6 HOH A 50 650 27 HOH HOH . I 6 HOH A 51 651 29 HOH HOH . I 6 HOH A 52 652 30 HOH HOH . I 6 HOH A 53 653 34 HOH HOH . I 6 HOH A 54 654 35 HOH HOH . I 6 HOH A 55 655 37 HOH HOH . I 6 HOH A 56 656 39 HOH HOH . I 6 HOH A 57 657 41 HOH HOH . I 6 HOH A 58 658 43 HOH HOH . I 6 HOH A 59 659 45 HOH HOH . I 6 HOH A 60 660 48 HOH HOH . I 6 HOH A 61 661 52 HOH HOH . I 6 HOH A 62 662 54 HOH HOH . I 6 HOH A 63 663 55 HOH HOH . I 6 HOH A 64 664 56 HOH HOH . I 6 HOH A 65 665 59 HOH HOH . I 6 HOH A 66 666 63 HOH HOH . I 6 HOH A 67 667 64 HOH HOH . I 6 HOH A 68 668 66 HOH HOH . I 6 HOH A 69 669 68 HOH HOH . I 6 HOH A 70 670 70 HOH HOH . I 6 HOH A 71 671 71 HOH HOH . I 6 HOH A 72 672 73 HOH HOH . I 6 HOH A 73 673 74 HOH HOH . I 6 HOH A 74 674 79 HOH HOH . I 6 HOH A 75 675 81 HOH HOH . I 6 HOH A 76 676 84 HOH HOH . I 6 HOH A 77 677 86 HOH HOH . I 6 HOH A 78 678 95 HOH HOH . I 6 HOH A 79 679 96 HOH HOH . I 6 HOH A 80 680 99 HOH HOH . I 6 HOH A 81 681 101 HOH HOH . I 6 HOH A 82 682 102 HOH HOH . I 6 HOH A 83 683 103 HOH HOH . I 6 HOH A 84 684 104 HOH HOH . I 6 HOH A 85 685 106 HOH HOH . I 6 HOH A 86 686 107 HOH HOH . I 6 HOH A 87 687 108 HOH HOH . I 6 HOH A 88 688 112 HOH HOH . I 6 HOH A 89 689 118 HOH HOH . I 6 HOH A 90 690 120 HOH HOH . I 6 HOH A 91 691 124 HOH HOH . I 6 HOH A 92 692 125 HOH HOH . I 6 HOH A 93 693 126 HOH HOH . I 6 HOH A 94 694 128 HOH HOH . I 6 HOH A 95 695 129 HOH HOH . I 6 HOH A 96 696 132 HOH HOH . I 6 HOH A 97 697 133 HOH HOH . I 6 HOH A 98 698 134 HOH HOH . I 6 HOH A 99 699 135 HOH HOH . I 6 HOH A 100 700 136 HOH HOH . I 6 HOH A 101 701 137 HOH HOH . I 6 HOH A 102 702 138 HOH HOH . I 6 HOH A 103 703 139 HOH HOH . I 6 HOH A 104 704 140 HOH HOH . I 6 HOH A 105 705 141 HOH HOH . I 6 HOH A 106 706 142 HOH HOH . I 6 HOH A 107 707 143 HOH HOH . I 6 HOH A 108 708 144 HOH HOH . I 6 HOH A 109 709 145 HOH HOH . I 6 HOH A 110 710 146 HOH HOH . I 6 HOH A 111 711 147 HOH HOH . I 6 HOH A 112 712 148 HOH HOH . I 6 HOH A 113 713 149 HOH HOH . I 6 HOH A 114 714 150 HOH HOH . I 6 HOH A 115 715 151 HOH HOH . I 6 HOH A 116 716 152 HOH HOH . I 6 HOH A 117 717 153 HOH HOH . I 6 HOH A 118 718 154 HOH HOH . I 6 HOH A 119 719 157 HOH HOH . I 6 HOH A 120 720 158 HOH HOH . I 6 HOH A 121 721 159 HOH HOH . I 6 HOH A 122 722 160 HOH HOH . I 6 HOH A 123 723 161 HOH HOH . I 6 HOH A 124 724 162 HOH HOH . I 6 HOH A 125 725 163 HOH HOH . I 6 HOH A 126 726 165 HOH HOH . I 6 HOH A 127 727 166 HOH HOH . I 6 HOH A 128 728 167 HOH HOH . I 6 HOH A 129 729 180 HOH HOH . I 6 HOH A 130 730 198 HOH HOH . I 6 HOH A 131 731 219 HOH HOH . I 6 HOH A 132 732 220 HOH HOH . I 6 HOH A 133 733 221 HOH HOH . I 6 HOH A 134 734 222 HOH HOH . I 6 HOH A 135 735 223 HOH HOH . I 6 HOH A 136 736 224 HOH HOH . I 6 HOH A 137 737 225 HOH HOH . I 6 HOH A 138 738 227 HOH HOH . I 6 HOH A 139 739 228 HOH HOH . I 6 HOH A 140 740 229 HOH HOH . I 6 HOH A 141 741 230 HOH HOH . I 6 HOH A 142 742 232 HOH HOH . I 6 HOH A 143 743 234 HOH HOH . I 6 HOH A 144 744 242 HOH HOH . J 6 HOH B 1 601 214 HOH HOH . J 6 HOH B 2 602 215 HOH HOH . J 6 HOH B 3 603 241 HOH HOH . J 6 HOH B 4 604 91 HOH HOH . J 6 HOH B 5 605 192 HOH HOH . J 6 HOH B 6 606 5 HOH HOH . J 6 HOH B 7 607 12 HOH HOH . J 6 HOH B 8 608 14 HOH HOH . J 6 HOH B 9 609 15 HOH HOH . J 6 HOH B 10 610 16 HOH HOH . J 6 HOH B 11 611 20 HOH HOH . J 6 HOH B 12 612 21 HOH HOH . J 6 HOH B 13 613 28 HOH HOH . J 6 HOH B 14 614 31 HOH HOH . J 6 HOH B 15 615 33 HOH HOH . J 6 HOH B 16 616 36 HOH HOH . J 6 HOH B 17 617 42 HOH HOH . J 6 HOH B 18 618 44 HOH HOH . J 6 HOH B 19 619 47 HOH HOH . J 6 HOH B 20 620 49 HOH HOH . J 6 HOH B 21 621 51 HOH HOH . J 6 HOH B 22 622 60 HOH HOH . J 6 HOH B 23 623 62 HOH HOH . J 6 HOH B 24 624 65 HOH HOH . J 6 HOH B 25 625 67 HOH HOH . J 6 HOH B 26 626 72 HOH HOH . J 6 HOH B 27 627 75 HOH HOH . J 6 HOH B 28 628 76 HOH HOH . J 6 HOH B 29 629 77 HOH HOH . J 6 HOH B 30 630 82 HOH HOH . J 6 HOH B 31 631 83 HOH HOH . J 6 HOH B 32 632 87 HOH HOH . J 6 HOH B 33 633 88 HOH HOH . J 6 HOH B 34 634 89 HOH HOH . J 6 HOH B 35 635 92 HOH HOH . J 6 HOH B 36 636 94 HOH HOH . J 6 HOH B 37 637 97 HOH HOH . J 6 HOH B 38 638 98 HOH HOH . J 6 HOH B 39 639 100 HOH HOH . J 6 HOH B 40 640 109 HOH HOH . J 6 HOH B 41 641 113 HOH HOH . J 6 HOH B 42 642 114 HOH HOH . J 6 HOH B 43 643 117 HOH HOH . J 6 HOH B 44 644 122 HOH HOH . J 6 HOH B 45 645 123 HOH HOH . J 6 HOH B 46 646 127 HOH HOH . J 6 HOH B 47 647 131 HOH HOH . J 6 HOH B 48 648 169 HOH HOH . J 6 HOH B 49 649 170 HOH HOH . J 6 HOH B 50 650 171 HOH HOH . J 6 HOH B 51 651 172 HOH HOH . J 6 HOH B 52 652 173 HOH HOH . J 6 HOH B 53 653 174 HOH HOH . J 6 HOH B 54 654 175 HOH HOH . J 6 HOH B 55 655 176 HOH HOH . J 6 HOH B 56 656 177 HOH HOH . J 6 HOH B 57 657 178 HOH HOH . J 6 HOH B 58 658 179 HOH HOH . J 6 HOH B 59 659 181 HOH HOH . J 6 HOH B 60 660 182 HOH HOH . J 6 HOH B 61 661 183 HOH HOH . J 6 HOH B 62 662 184 HOH HOH . J 6 HOH B 63 663 185 HOH HOH . J 6 HOH B 64 664 186 HOH HOH . J 6 HOH B 65 665 187 HOH HOH . J 6 HOH B 66 666 188 HOH HOH . J 6 HOH B 67 667 189 HOH HOH . J 6 HOH B 68 668 190 HOH HOH . J 6 HOH B 69 669 191 HOH HOH . J 6 HOH B 70 670 193 HOH HOH . J 6 HOH B 71 671 194 HOH HOH . J 6 HOH B 72 672 195 HOH HOH . J 6 HOH B 73 673 196 HOH HOH . J 6 HOH B 74 674 199 HOH HOH . J 6 HOH B 75 675 200 HOH HOH . J 6 HOH B 76 676 201 HOH HOH . J 6 HOH B 77 677 202 HOH HOH . J 6 HOH B 78 678 203 HOH HOH . J 6 HOH B 79 679 204 HOH HOH . J 6 HOH B 80 680 205 HOH HOH . J 6 HOH B 81 681 206 HOH HOH . J 6 HOH B 82 682 207 HOH HOH . J 6 HOH B 83 683 208 HOH HOH . J 6 HOH B 84 684 210 HOH HOH . J 6 HOH B 85 685 211 HOH HOH . J 6 HOH B 86 686 213 HOH HOH . J 6 HOH B 87 687 217 HOH HOH . J 6 HOH B 88 688 236 HOH HOH . J 6 HOH B 89 689 237 HOH HOH . J 6 HOH B 90 690 238 HOH HOH . J 6 HOH B 91 691 239 HOH HOH . J 6 HOH B 92 692 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2J3 . . . F 5 13.79 -29.719 3.373 1 55 ? O1 2J3 504 A 1 HETATM 2 O O2 2J3 . . . F 5 13.135 -28.015 5.98 1 60.33 ? O2 2J3 504 A 1 HETATM 3 C C3 2J3 . . . F 5 13.071 -29.975 4.582 1 57.83 ? C3 2J3 504 A 1 HETATM 4 O O3 2J3 . . . F 5 12.397 -24.382 5.984 1 60.93 ? O3 2J3 504 A 1 HETATM 5 C C4 2J3 . . . F 5 12.336 -28.703 5.011 1 57.93 ? C4 2J3 504 A 1 HETATM 6 O O4 2J3 . . . F 5 14.566 -21.647 6.488 1 62.46 ? O4 2J3 504 A 1 HETATM 7 C C5 2J3 . . . F 5 12.648 -26.762 6.499 1 60.67 ? C5 2J3 504 A 1 HETATM 8 C C16 2J3 . . . F 5 12.119 -31.145 4.359 1 56.7 ? C16 2J3 504 A 1 HETATM 9 C C15 2J3 . . . F 5 11.147 -26.8 6.778 1 56.42 ? C15 2J3 504 A 1 HETATM 10 C C6 2J3 . . . F 5 13.054 -25.596 5.587 1 62.1 ? C6 2J3 504 A 1 HETATM 11 C C7 2J3 . . . F 5 12.94 -23.142 5.488 1 58.99 ? C7 2J3 504 A 1 HETATM 12 C C14 2J3 . . . F 5 12.704 -22.963 3.988 1 56.78 ? C14 2J3 504 A 1 HETATM 13 C C8 2J3 . . . F 5 14.406 -22.936 5.878 1 61.46 ? C8 2J3 504 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #