data_4P8H
#
_model_server_result.job_id            v0Ndojwtn3cdafMmPZ2tLg 
_model_server_result.datetime_utc      '2024-10-19 16:30:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p8h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4P8H 
#
_exptl.entry_id    4P8H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.31 
_cell.angle_gamma         90 
_cell.entry_id            4P8H 
_cell.length_a            72.045 
_cell.length_b            77.297 
_cell.length_c            81.209 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P8H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 407 A CYS 387 1_555 D N3 O95 . A O95 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? 
covale ? covale2 B SG CYS 407 B CYS 387 1_555 F N3 O95 . B O95 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4P8H 
_atom_sites.fract_transf_matrix[1][1]    0.01388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002525 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 501 FAD FAD . 
D 3 O95 A 1 502 550 O95 O95 . 
E 2 FAD B 1 501 501 FAD FAD . 
F 3 O95 B 1 502 550 O95 O95 . 
G 4 HOH A 1 601 602 HOH HOH . 
G 4 HOH A 2 602 601 HOH HOH . 
G 4 HOH A 3 603 603 HOH HOH . 
G 4 HOH A 4 604 604 HOH HOH . 
G 4 HOH A 5 605 605 HOH HOH . 
G 4 HOH A 6 606 606 HOH HOH . 
G 4 HOH A 7 607 607 HOH HOH . 
G 4 HOH A 8 608 608 HOH HOH . 
H 4 HOH B 1 601 601 HOH HOH . 
H 4 HOH B 2 602 602 HOH HOH . 
H 4 HOH B 3 603 603 HOH HOH . 
H 4 HOH B 4 604 604 HOH HOH . 
H 4 HOH B 5 605 605 HOH HOH . 
H 4 HOH B 6 606 606 HOH HOH . 
H 4 HOH B 7 607 607 HOH HOH . 
H 4 HOH B 8 608 608 HOH HOH . 
H 4 HOH B 9 609 609 HOH HOH . 
H 4 HOH B 10 610 610 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 2 5.565 -21.052 42.785 1 43.49 ? PA FAD 501 B 1 
HETATM 2 O O1A FAD . . . E 2 6.628 -22.121 42.682 1 44.15 ? O1A FAD 501 B 1 
HETATM 3 O O2A FAD . . . E 2 4.123 -21.438 42.997 1 43.87 ? O2A FAD 501 B 1 
HETATM 4 O O5B FAD . . . E 2 5.973 -20.06 43.977 1 43.54 ? O5B FAD 501 B 1 
HETATM 5 C C5B FAD . . . E 2 7.286 -19.521 44.107 1 43.36 ? C5B FAD 501 B 1 
HETATM 6 C C4B FAD . . . E 2 7.18 -18.238 44.918 1 43.26 ? C4B FAD 501 B 1 
HETATM 7 O O4B FAD . . . E 2 6.359 -17.315 44.202 1 42.83 ? O4B FAD 501 B 1 
HETATM 8 C C3B FAD . . . E 2 6.516 -18.491 46.267 1 43.56 ? C3B FAD 501 B 1 
HETATM 9 O O3B FAD . . . E 2 7.298 -17.922 47.322 1 43.14 ? O3B FAD 501 B 1 
HETATM 10 C C2B FAD . . . E 2 5.157 -17.822 46.185 1 43.33 ? C2B FAD 501 B 1 
HETATM 11 O O2B FAD . . . E 2 4.819 -17.162 47.409 1 43.7 ? O2B FAD 501 B 1 
HETATM 12 C C1B FAD . . . E 2 5.32 -16.824 45.052 1 43.01 ? C1B FAD 501 B 1 
HETATM 13 N N9A FAD . . . E 2 4.075 -16.6 44.275 1 42.63 ? N9A FAD 501 B 1 
HETATM 14 C C8A FAD . . . E 2 3.503 -17.448 43.401 1 42.32 ? C8A FAD 501 B 1 
HETATM 15 N N7A FAD . . . E 2 2.378 -16.907 42.866 1 42.41 ? N7A FAD 501 B 1 
HETATM 16 C C5A FAD . . . E 2 2.222 -15.682 43.4 1 42.62 ? C5A FAD 501 B 1 
HETATM 17 C C6A FAD . . . E 2 1.249 -14.567 43.279 1 42.6 ? C6A FAD 501 B 1 
HETATM 18 N N6A FAD . . . E 2 0.184 -14.661 42.451 1 43.1 ? N6A FAD 501 B 1 
HETATM 19 N N1A FAD . . . E 2 1.457 -13.453 44.021 1 42.26 ? N1A FAD 501 B 1 
HETATM 20 C C2A FAD . . . E 2 2.513 -13.339 44.852 1 42.55 ? C2A FAD 501 B 1 
HETATM 21 N N3A FAD . . . E 2 3.434 -14.309 45.012 1 42.61 ? N3A FAD 501 B 1 
HETATM 22 C C4A FAD . . . E 2 3.347 -15.482 44.327 1 42.78 ? C4A FAD 501 B 1 
HETATM 23 N N1 FAD . . . E 2 14.274 -19.596 37.87 1 45.07 ? N1 FAD 501 B 1 
HETATM 24 C C2 FAD . . . E 2 15.143 -18.697 37.336 1 45.04 ? C2 FAD 501 B 1 
HETATM 25 O O2 FAD . . . E 2 15.212 -17.558 37.843 1 44.67 ? O2 FAD 501 B 1 
HETATM 26 N N3 FAD . . . E 2 15.933 -18.987 36.284 1 45.03 ? N3 FAD 501 B 1 
HETATM 27 C C4 FAD . . . E 2 15.919 -20.187 35.685 1 45.14 ? C4 FAD 501 B 1 
HETATM 28 O O4 FAD . . . E 2 16.663 -20.428 34.711 1 45.3 ? O4 FAD 501 B 1 
HETATM 29 C C4X FAD . . . E 2 14.997 -21.226 36.206 1 45.22 ? C4X FAD 501 B 1 
HETATM 30 N N5 FAD . . . E 2 14.926 -22.457 35.655 1 45.3 ? N5 FAD 501 B 1 
HETATM 31 C C5X FAD . . . E 2 14.079 -23.392 36.143 1 45.57 ? C5X FAD 501 B 1 
HETATM 32 C C6 FAD . . . E 2 14.037 -24.648 35.543 1 45.97 ? C6 FAD 501 B 1 
HETATM 33 C C7 FAD . . . E 2 13.175 -25.631 36.023 1 46.24 ? C7 FAD 501 B 1 
HETATM 34 C C7M FAD . . . E 2 13.154 -26.982 35.351 1 46.24 ? C7M FAD 501 B 1 
HETATM 35 C C8 FAD . . . E 2 12.289 -25.332 37.19 1 46.51 ? C8 FAD 501 B 1 
HETATM 36 C C8M FAD . . . E 2 11.344 -26.376 37.73 1 47.37 ? C8M FAD 501 B 1 
HETATM 37 C C9 FAD . . . E 2 12.329 -24.074 37.792 1 46.04 ? C9 FAD 501 B 1 
HETATM 38 C C9A FAD . . . E 2 13.193 -23.086 37.313 1 45.54 ? C9A FAD 501 B 1 
HETATM 39 N N10 FAD . . . E 2 13.247 -21.796 37.905 1 45.34 ? N10 FAD 501 B 1 
HETATM 40 C C10 FAD . . . E 2 14.152 -20.85 37.368 1 45.31 ? C10 FAD 501 B 1 
HETATM 41 C C1' FAD . . . E 2 12.406 -21.447 39.062 1 44.94 ? C1' FAD 501 B 1 
HETATM 42 C C2' FAD . . . E 2 11.103 -20.747 38.679 1 44.58 ? C2' FAD 501 B 1 
HETATM 43 O O2' FAD . . . E 2 11.28 -19.988 37.478 1 44.6 ? O2' FAD 501 B 1 
HETATM 44 C C3' FAD . . . E 2 10.632 -19.818 39.803 1 44.3 ? C3' FAD 501 B 1 
HETATM 45 O O3' FAD . . . E 2 10.786 -20.448 41.081 1 44.74 ? O3' FAD 501 B 1 
HETATM 46 C C4' FAD . . . E 2 9.185 -19.348 39.646 1 43.97 ? C4' FAD 501 B 1 
HETATM 47 O O4' FAD . . . E 2 8.938 -18.362 40.65 1 44.31 ? O4' FAD 501 B 1 
HETATM 48 C C5' FAD . . . E 2 8.169 -20.473 39.813 1 43.51 ? C5' FAD 501 B 1 
HETATM 49 O O5' FAD . . . E 2 6.89 -20.051 39.345 1 43.17 ? O5' FAD 501 B 1 
HETATM 50 P P FAD . . . E 2 5.542 -20.643 40.002 1 43.62 ? P FAD 501 B 1 
HETATM 51 O O1P FAD . . . E 2 4.351 -19.997 39.344 1 43.77 ? O1P FAD 501 B 1 
HETATM 52 O O2P FAD . . . E 2 5.625 -22.15 40.015 1 44.53 ? O2P FAD 501 B 1 
HETATM 53 O O3P FAD . . . E 2 5.642 -20.081 41.506 1 43.66 ? O3P FAD 501 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#