data_4P8K # _model_server_result.job_id VURPx3_PMQ646HDLYBxSKA _model_server_result.datetime_utc '2024-11-14 04:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4P8K # _exptl.entry_id 4P8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103 _cell.angle_gamma 90 _cell.entry_id 4P8K _cell.length_a 76.784 _cell.length_b 82.882 _cell.length_c 80.538 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8K _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 126 n n PA O2A FAD sing 127 n n PA O5B FAD sing 128 n n PA O3P FAD sing 129 n n O2A HOA2 FAD sing 130 n n O5B C5B FAD sing 131 n n C5B C4B FAD sing 132 n n C5B H51A FAD sing 133 n n C5B H52A FAD sing 134 n n C4B O4B FAD sing 135 n n C4B C3B FAD sing 136 n n C4B H4B FAD sing 137 n n O4B C1B FAD sing 138 n n C3B O3B FAD sing 139 n n C3B C2B FAD sing 140 n n C3B H3B FAD sing 141 n n O3B HO3A FAD sing 142 n n C2B O2B FAD sing 143 n n C2B C1B FAD sing 144 n n C2B H2B FAD sing 145 n n O2B HO2A FAD sing 146 n n C1B N9A FAD sing 147 n n C1B H1B FAD sing 148 n n N9A C8A FAD sing 149 n y N9A C4A FAD sing 150 n y C8A N7A FAD doub 151 n y C8A H8A FAD sing 152 n n N7A C5A FAD sing 153 n y C5A C6A FAD sing 154 n y C5A C4A FAD doub 155 n y C6A N6A FAD sing 156 n n C6A N1A FAD doub 157 n y N6A H61A FAD sing 158 n n N6A H62A FAD sing 159 n n N1A C2A FAD sing 160 n y C2A N3A FAD doub 161 n y C2A H2A FAD sing 162 n n N3A C4A FAD sing 163 n y N1 C2 FAD sing 164 n n N1 C10 FAD doub 165 n n C2 O2 FAD doub 166 n n C2 N3 FAD sing 167 n n N3 C4 FAD sing 168 n n N3 HN3 FAD sing 169 n n C4 O4 FAD doub 170 n n C4 C4X FAD sing 171 n n C4X N5 FAD doub 172 n n C4X C10 FAD sing 173 n n N5 C5X FAD sing 174 n n C5X C6 FAD doub 175 n y C5X C9A FAD sing 176 n y C6 C7 FAD sing 177 n y C6 H6 FAD sing 178 n n C7 C7M FAD sing 179 n n C7 C8 FAD doub 180 n y C7M HM71 FAD sing 181 n n C7M HM72 FAD sing 182 n n C7M HM73 FAD sing 183 n n C8 C8M FAD sing 184 n n C8 C9 FAD sing 185 n y C8M HM81 FAD sing 186 n n C8M HM82 FAD sing 187 n n C8M HM83 FAD sing 188 n n C9 C9A FAD doub 189 n y C9 H9 FAD sing 190 n n C9A N10 FAD sing 191 n n N10 C10 FAD sing 192 n n N10 C1' FAD sing 193 n n C1' C2' FAD sing 194 n n C1' "H1'1" FAD sing 195 n n C1' "H1'2" FAD sing 196 n n C2' O2' FAD sing 197 n n C2' C3' FAD sing 198 n n C2' H2' FAD sing 199 n n O2' HO2' FAD sing 200 n n C3' O3' FAD sing 201 n n C3' C4' FAD sing 202 n n C3' H3' FAD sing 203 n n O3' HO3' FAD sing 204 n n C4' O4' FAD sing 205 n n C4' C5' FAD sing 206 n n C4' H4' FAD sing 207 n n O4' HO4' FAD sing 208 n n C5' O5' FAD sing 209 n n C5' "H5'1" FAD sing 210 n n C5' "H5'2" FAD sing 211 n n O5' P FAD sing 212 n n P O1P FAD doub 213 n n P O2P FAD sing 214 n n P O3P FAD sing 215 n n O2P HOP2 FAD sing 216 n n # _atom_sites.entry_id 4P8K _atom_sites.fract_transf_matrix[1][1] 0.013024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 38C A 1 502 600 38C 38C . E 2 FAD B 1 501 501 FAD FAD . F 3 38C B 1 502 600 38C 38C . G 4 HOH A 1 601 67 HOH HOH . G 4 HOH A 2 602 13 HOH HOH . G 4 HOH A 3 603 66 HOH HOH . G 4 HOH A 4 604 1 HOH HOH . G 4 HOH A 5 605 14 HOH HOH . G 4 HOH A 6 606 3 HOH HOH . G 4 HOH A 7 607 65 HOH HOH . G 4 HOH A 8 608 75 HOH HOH . G 4 HOH A 9 609 2 HOH HOH . G 4 HOH A 10 610 4 HOH HOH . G 4 HOH A 11 611 5 HOH HOH . G 4 HOH A 12 612 6 HOH HOH . G 4 HOH A 13 613 7 HOH HOH . G 4 HOH A 14 614 8 HOH HOH . G 4 HOH A 15 615 9 HOH HOH . G 4 HOH A 16 616 10 HOH HOH . G 4 HOH A 17 617 11 HOH HOH . G 4 HOH A 18 618 12 HOH HOH . G 4 HOH A 19 619 15 HOH HOH . G 4 HOH A 20 620 16 HOH HOH . G 4 HOH A 21 621 17 HOH HOH . G 4 HOH A 22 622 18 HOH HOH . G 4 HOH A 23 623 19 HOH HOH . G 4 HOH A 24 624 20 HOH HOH . G 4 HOH A 25 625 22 HOH HOH . G 4 HOH A 26 626 23 HOH HOH . G 4 HOH A 27 627 24 HOH HOH . G 4 HOH A 28 628 25 HOH HOH . G 4 HOH A 29 629 26 HOH HOH . G 4 HOH A 30 630 27 HOH HOH . G 4 HOH A 31 631 49 HOH HOH . G 4 HOH A 32 632 50 HOH HOH . G 4 HOH A 33 633 51 HOH HOH . G 4 HOH A 34 634 61 HOH HOH . G 4 HOH A 35 635 62 HOH HOH . G 4 HOH A 36 636 63 HOH HOH . G 4 HOH A 37 637 64 HOH HOH . G 4 HOH A 38 638 68 HOH HOH . G 4 HOH A 39 639 69 HOH HOH . G 4 HOH A 40 640 70 HOH HOH . G 4 HOH A 41 641 71 HOH HOH . G 4 HOH A 42 642 72 HOH HOH . G 4 HOH A 43 643 73 HOH HOH . G 4 HOH A 44 644 74 HOH HOH . G 4 HOH A 45 645 76 HOH HOH . G 4 HOH A 46 646 77 HOH HOH . G 4 HOH A 47 647 78 HOH HOH . G 4 HOH A 48 648 83 HOH HOH . G 4 HOH A 49 649 84 HOH HOH . G 4 HOH A 50 650 85 HOH HOH . G 4 HOH A 51 651 86 HOH HOH . H 4 HOH B 1 601 48 HOH HOH . H 4 HOH B 2 602 21 HOH HOH . H 4 HOH B 3 603 28 HOH HOH . H 4 HOH B 4 604 29 HOH HOH . H 4 HOH B 5 605 30 HOH HOH . H 4 HOH B 6 606 31 HOH HOH . H 4 HOH B 7 607 32 HOH HOH . H 4 HOH B 8 608 33 HOH HOH . H 4 HOH B 9 609 34 HOH HOH . H 4 HOH B 10 610 35 HOH HOH . H 4 HOH B 11 611 36 HOH HOH . H 4 HOH B 12 612 37 HOH HOH . H 4 HOH B 13 613 38 HOH HOH . H 4 HOH B 14 614 39 HOH HOH . H 4 HOH B 15 615 40 HOH HOH . H 4 HOH B 16 616 41 HOH HOH . H 4 HOH B 17 617 42 HOH HOH . H 4 HOH B 18 618 43 HOH HOH . H 4 HOH B 19 619 44 HOH HOH . H 4 HOH B 20 620 45 HOH HOH . H 4 HOH B 21 621 46 HOH HOH . H 4 HOH B 22 622 47 HOH HOH . H 4 HOH B 23 623 52 HOH HOH . H 4 HOH B 24 624 53 HOH HOH . H 4 HOH B 25 625 54 HOH HOH . H 4 HOH B 26 626 55 HOH HOH . H 4 HOH B 27 627 56 HOH HOH . H 4 HOH B 28 628 57 HOH HOH . H 4 HOH B 29 629 58 HOH HOH . H 4 HOH B 30 630 59 HOH HOH . H 4 HOH B 31 631 60 HOH HOH . H 4 HOH B 32 632 79 HOH HOH . H 4 HOH B 33 633 80 HOH HOH . H 4 HOH B 34 634 81 HOH HOH . H 4 HOH B 35 635 82 HOH HOH . H 4 HOH B 36 636 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 41.992 -20.919 43.177 1 34.71 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . E 2 43.088 -21.949 43.127 1 34.81 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . E 2 40.576 -21.34 43.458 1 35.91 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . E 2 42.364 -19.782 44.248 1 35.04 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . E 2 43.713 -19.431 44.548 1 35.04 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . E 2 43.737 -18.085 45.259 1 34.86 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . E 2 43.044 -17.111 44.47 1 35.1 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . E 2 43.039 -18.141 46.611 1 35.12 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . E 2 43.806 -17.387 47.556 1 34.86 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . E 2 41.707 -17.46 46.381 1 35.33 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . E 2 41.237 -16.778 47.546 1 36.05 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . E 2 42.042 -16.476 45.273 1 35.38 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . E 2 40.847 -16.087 44.487 1 35 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . E 2 40.231 -16.813 43.537 1 35.04 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . E 2 39.167 -16.141 43.028 1 34.9 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . E 2 39.093 -14.959 43.66 1 34.79 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . E 2 38.212 -13.769 43.615 1 35.07 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . E 2 37.165 -13.704 42.761 1 35.53 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . E 2 38.488 -12.745 44.456 1 35.64 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . E 2 39.524 -12.788 45.32 1 35.55 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . E 2 40.365 -13.835 45.41 1 35.5 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . E 2 40.205 -14.93 44.623 1 35.22 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . E 2 50.678 -20.573 38.084 1 35.9 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . E 2 51.548 -19.751 37.446 1 35.83 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . E 2 51.786 -18.634 37.954 1 35.08 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . E 2 52.158 -20.103 36.295 1 36.08 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . E 2 51.945 -21.29 35.701 1 36.66 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . E 2 52.512 -21.593 34.63 1 37.81 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . E 2 51.005 -22.246 36.336 1 36.39 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . E 2 50.735 -23.458 35.802 1 36.35 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . E 2 49.871 -24.309 36.403 1 36.41 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . E 2 49.619 -25.547 35.818 1 36.92 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . E 2 48.742 -26.448 36.415 1 36.62 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . E 2 48.498 -27.781 35.753 1 36.65 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . E 2 48.06 -26.075 37.691 1 36.71 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . E 2 47.102 -27.027 38.356 1 37.08 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . E 2 48.305 -24.833 38.278 1 36.46 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . E 2 49.188 -23.93 37.683 1 36.53 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . E 2 49.462 -22.661 38.259 1 36.63 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . E 2 50.371 -21.801 37.6 1 36.49 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . E 2 48.827 -22.218 39.506 1 35.95 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . E 2 47.627 -21.325 39.179 1 36.01 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . E 2 47.934 -20.439 38.095 1 36.01 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . E 2 47.216 -20.501 40.392 1 35.3 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . E 2 47.205 -21.357 41.532 1 35.62 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . E 2 45.85 -19.84 40.227 1 35.24 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . E 2 45.695 -18.831 41.231 1 35.69 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . E 2 44.697 -20.831 40.352 1 35.27 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . E 2 43.517 -20.212 39.855 1 35.15 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . E 2 42.063 -20.684 40.347 1 34.94 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . E 2 41.035 -19.981 39.497 1 35.36 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . E 2 42.034 -22.188 40.436 1 35.75 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . E 2 42 -20.046 41.822 1 35.78 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #