data_4P8M # _model_server_result.job_id ydXKbgvvD_WAoP4vGi0www _model_server_result.datetime_utc '2024-12-01 23:59:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4P8M # _exptl.entry_id 4P8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.253 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.53 _cell.angle_gamma 90 _cell.entry_id 4P8M _cell.length_a 59.243 _cell.length_b 83.981 _cell.length_c 90.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8M _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H20 O4' _chem_comp.formula_weight 192.253 _chem_comp.id 2J3 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 2J3 sing 1 n n C14 C7 2J3 sing 2 n n C16 C3 2J3 sing 3 n n C3 C4 2J3 sing 4 n n C4 O2 2J3 sing 5 n n C7 C8 2J3 sing 6 n n C7 O3 2J3 sing 7 n n C6 O3 2J3 sing 8 n n C6 C5 2J3 sing 9 n n C8 O4 2J3 sing 10 n n O2 C5 2J3 sing 11 n n C5 C15 2J3 sing 12 n n O1 H1 2J3 sing 13 n n C3 H2 2J3 sing 14 n n C4 H3 2J3 sing 15 n n C4 H4 2J3 sing 16 n n O4 H5 2J3 sing 17 n n C5 H6 2J3 sing 18 n n C16 H7 2J3 sing 19 n n C16 H8 2J3 sing 20 n n C16 H9 2J3 sing 21 n n C15 H10 2J3 sing 22 n n C15 H11 2J3 sing 23 n n C15 H12 2J3 sing 24 n n C6 H13 2J3 sing 25 n n C6 H14 2J3 sing 26 n n C7 H15 2J3 sing 27 n n C14 H16 2J3 sing 28 n n C14 H17 2J3 sing 29 n n C14 H18 2J3 sing 30 n n C8 H19 2J3 sing 31 n n C8 H20 2J3 sing 32 n n # _atom_sites.entry_id 4P8M _atom_sites.fract_transf_matrix[1][1] 0.01688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003136 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 R58 A 1 502 550 R58 R58 . E 4 2J3 A 1 503 510 2J3 23B . F 5 IMD A 1 504 520 IMD IMD . G 2 FAD B 1 501 501 FAD FAD . H 3 R58 B 1 502 550 R58 R58 . I 6 HOH A 1 601 136 HOH HOH . I 6 HOH A 2 602 108 HOH HOH . I 6 HOH A 3 603 71 HOH HOH . I 6 HOH A 4 604 132 HOH HOH . I 6 HOH A 5 605 61 HOH HOH . I 6 HOH A 6 606 162 HOH HOH . I 6 HOH A 7 607 117 HOH HOH . I 6 HOH A 8 608 55 HOH HOH . I 6 HOH A 9 609 184 HOH HOH . I 6 HOH A 10 610 27 HOH HOH . I 6 HOH A 11 611 140 HOH HOH . I 6 HOH A 12 612 128 HOH HOH . I 6 HOH A 13 613 133 HOH HOH . I 6 HOH A 14 614 52 HOH HOH . I 6 HOH A 15 615 126 HOH HOH . I 6 HOH A 16 616 1 HOH HOH . I 6 HOH A 17 617 2 HOH HOH . I 6 HOH A 18 618 5 HOH HOH . I 6 HOH A 19 619 7 HOH HOH . I 6 HOH A 20 620 9 HOH HOH . I 6 HOH A 21 621 10 HOH HOH . I 6 HOH A 22 622 11 HOH HOH . I 6 HOH A 23 623 12 HOH HOH . I 6 HOH A 24 624 16 HOH HOH . I 6 HOH A 25 625 17 HOH HOH . I 6 HOH A 26 626 20 HOH HOH . I 6 HOH A 27 627 21 HOH HOH . I 6 HOH A 28 628 22 HOH HOH . I 6 HOH A 29 629 23 HOH HOH . I 6 HOH A 30 630 24 HOH HOH . I 6 HOH A 31 631 25 HOH HOH . I 6 HOH A 32 632 26 HOH HOH . I 6 HOH A 33 633 28 HOH HOH . I 6 HOH A 34 634 30 HOH HOH . I 6 HOH A 35 635 31 HOH HOH . I 6 HOH A 36 636 33 HOH HOH . I 6 HOH A 37 637 37 HOH HOH . I 6 HOH A 38 638 38 HOH HOH . I 6 HOH A 39 639 39 HOH HOH . I 6 HOH A 40 640 44 HOH HOH . I 6 HOH A 41 641 45 HOH HOH . I 6 HOH A 42 642 46 HOH HOH . I 6 HOH A 43 643 48 HOH HOH . I 6 HOH A 44 644 49 HOH HOH . I 6 HOH A 45 645 51 HOH HOH . I 6 HOH A 46 646 54 HOH HOH . I 6 HOH A 47 647 56 HOH HOH . I 6 HOH A 48 648 57 HOH HOH . I 6 HOH A 49 649 58 HOH HOH . I 6 HOH A 50 650 59 HOH HOH . I 6 HOH A 51 651 60 HOH HOH . I 6 HOH A 52 652 63 HOH HOH . I 6 HOH A 53 653 64 HOH HOH . I 6 HOH A 54 654 65 HOH HOH . I 6 HOH A 55 655 66 HOH HOH . I 6 HOH A 56 656 67 HOH HOH . I 6 HOH A 57 657 68 HOH HOH . I 6 HOH A 58 658 69 HOH HOH . I 6 HOH A 59 659 70 HOH HOH . I 6 HOH A 60 660 72 HOH HOH . I 6 HOH A 61 661 109 HOH HOH . I 6 HOH A 62 662 110 HOH HOH . I 6 HOH A 63 663 111 HOH HOH . I 6 HOH A 64 664 112 HOH HOH . I 6 HOH A 65 665 113 HOH HOH . I 6 HOH A 66 666 114 HOH HOH . I 6 HOH A 67 667 115 HOH HOH . I 6 HOH A 68 668 116 HOH HOH . I 6 HOH A 69 669 118 HOH HOH . I 6 HOH A 70 670 119 HOH HOH . I 6 HOH A 71 671 120 HOH HOH . I 6 HOH A 72 672 121 HOH HOH . I 6 HOH A 73 673 122 HOH HOH . I 6 HOH A 74 674 123 HOH HOH . I 6 HOH A 75 675 124 HOH HOH . I 6 HOH A 76 676 125 HOH HOH . I 6 HOH A 77 677 127 HOH HOH . I 6 HOH A 78 678 129 HOH HOH . I 6 HOH A 79 679 130 HOH HOH . I 6 HOH A 80 680 131 HOH HOH . I 6 HOH A 81 681 134 HOH HOH . I 6 HOH A 82 682 135 HOH HOH . I 6 HOH A 83 683 137 HOH HOH . I 6 HOH A 84 684 163 HOH HOH . I 6 HOH A 85 685 164 HOH HOH . I 6 HOH A 86 686 165 HOH HOH . I 6 HOH A 87 687 166 HOH HOH . I 6 HOH A 88 688 167 HOH HOH . I 6 HOH A 89 689 168 HOH HOH . I 6 HOH A 90 690 169 HOH HOH . I 6 HOH A 91 691 174 HOH HOH . I 6 HOH A 92 692 175 HOH HOH . I 6 HOH A 93 693 176 HOH HOH . I 6 HOH A 94 694 177 HOH HOH . I 6 HOH A 95 695 178 HOH HOH . I 6 HOH A 96 696 179 HOH HOH . I 6 HOH A 97 697 180 HOH HOH . I 6 HOH A 98 698 182 HOH HOH . I 6 HOH A 99 699 183 HOH HOH . I 6 HOH A 100 700 197 HOH HOH . I 6 HOH A 101 701 200 HOH HOH . J 6 HOH B 1 601 85 HOH HOH . J 6 HOH B 2 602 107 HOH HOH . J 6 HOH B 3 603 15 HOH HOH . J 6 HOH B 4 604 152 HOH HOH . J 6 HOH B 5 605 62 HOH HOH . J 6 HOH B 6 606 198 HOH HOH . J 6 HOH B 7 607 35 HOH HOH . J 6 HOH B 8 608 43 HOH HOH . J 6 HOH B 9 609 84 HOH HOH . J 6 HOH B 10 610 161 HOH HOH . J 6 HOH B 11 611 34 HOH HOH . J 6 HOH B 12 612 199 HOH HOH . J 6 HOH B 13 613 86 HOH HOH . J 6 HOH B 14 614 36 HOH HOH . J 6 HOH B 15 615 14 HOH HOH . J 6 HOH B 16 616 6 HOH HOH . J 6 HOH B 17 617 154 HOH HOH . J 6 HOH B 18 618 170 HOH HOH . J 6 HOH B 19 619 3 HOH HOH . J 6 HOH B 20 620 4 HOH HOH . J 6 HOH B 21 621 8 HOH HOH . J 6 HOH B 22 622 13 HOH HOH . J 6 HOH B 23 623 18 HOH HOH . J 6 HOH B 24 624 19 HOH HOH . J 6 HOH B 25 625 29 HOH HOH . J 6 HOH B 26 626 32 HOH HOH . J 6 HOH B 27 627 40 HOH HOH . J 6 HOH B 28 628 41 HOH HOH . J 6 HOH B 29 629 42 HOH HOH . J 6 HOH B 30 630 47 HOH HOH . J 6 HOH B 31 631 50 HOH HOH . J 6 HOH B 32 632 53 HOH HOH . J 6 HOH B 33 633 73 HOH HOH . J 6 HOH B 34 634 74 HOH HOH . J 6 HOH B 35 635 75 HOH HOH . J 6 HOH B 36 636 76 HOH HOH . J 6 HOH B 37 637 77 HOH HOH . J 6 HOH B 38 638 78 HOH HOH . J 6 HOH B 39 639 79 HOH HOH . J 6 HOH B 40 640 80 HOH HOH . J 6 HOH B 41 641 81 HOH HOH . J 6 HOH B 42 642 82 HOH HOH . J 6 HOH B 43 643 83 HOH HOH . J 6 HOH B 44 644 87 HOH HOH . J 6 HOH B 45 645 88 HOH HOH . J 6 HOH B 46 646 89 HOH HOH . J 6 HOH B 47 647 90 HOH HOH . J 6 HOH B 48 648 91 HOH HOH . J 6 HOH B 49 649 92 HOH HOH . J 6 HOH B 50 650 93 HOH HOH . J 6 HOH B 51 651 94 HOH HOH . J 6 HOH B 52 652 95 HOH HOH . J 6 HOH B 53 653 96 HOH HOH . J 6 HOH B 54 654 97 HOH HOH . J 6 HOH B 55 655 98 HOH HOH . J 6 HOH B 56 656 99 HOH HOH . J 6 HOH B 57 657 100 HOH HOH . J 6 HOH B 58 658 101 HOH HOH . J 6 HOH B 59 659 102 HOH HOH . J 6 HOH B 60 660 103 HOH HOH . J 6 HOH B 61 661 104 HOH HOH . J 6 HOH B 62 662 105 HOH HOH . J 6 HOH B 63 663 106 HOH HOH . J 6 HOH B 64 664 138 HOH HOH . J 6 HOH B 65 665 139 HOH HOH . J 6 HOH B 66 666 141 HOH HOH . J 6 HOH B 67 667 142 HOH HOH . J 6 HOH B 68 668 143 HOH HOH . J 6 HOH B 69 669 144 HOH HOH . J 6 HOH B 70 670 145 HOH HOH . J 6 HOH B 71 671 146 HOH HOH . J 6 HOH B 72 672 147 HOH HOH . J 6 HOH B 73 673 148 HOH HOH . J 6 HOH B 74 674 149 HOH HOH . J 6 HOH B 75 675 150 HOH HOH . J 6 HOH B 76 676 151 HOH HOH . J 6 HOH B 77 677 153 HOH HOH . J 6 HOH B 78 678 155 HOH HOH . J 6 HOH B 79 679 156 HOH HOH . J 6 HOH B 80 680 157 HOH HOH . J 6 HOH B 81 681 158 HOH HOH . J 6 HOH B 82 682 159 HOH HOH . J 6 HOH B 83 683 160 HOH HOH . J 6 HOH B 84 684 171 HOH HOH . J 6 HOH B 85 685 172 HOH HOH . J 6 HOH B 86 686 173 HOH HOH . J 6 HOH B 87 687 185 HOH HOH . J 6 HOH B 88 688 186 HOH HOH . J 6 HOH B 89 689 187 HOH HOH . J 6 HOH B 90 690 188 HOH HOH . J 6 HOH B 91 691 189 HOH HOH . J 6 HOH B 92 692 190 HOH HOH . J 6 HOH B 93 693 191 HOH HOH . J 6 HOH B 94 694 192 HOH HOH . J 6 HOH B 95 695 193 HOH HOH . J 6 HOH B 96 696 194 HOH HOH . J 6 HOH B 97 697 195 HOH HOH . J 6 HOH B 98 698 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2J3 . . . E 4 0.359 -4.412 11.451 1 40.71 ? O1 2J3 503 A 1 HETATM 2 O O2 2J3 . . . E 4 0.061 -4.074 8.539 1 46.83 ? O2 2J3 503 A 1 HETATM 3 C C3 2J3 . . . E 4 0.929 -3.324 10.728 1 42.03 ? C3 2J3 503 A 1 HETATM 4 O O3 2J3 . . . E 4 2.07 -2.842 5.803 1 45.49 ? O3 2J3 503 A 1 HETATM 5 C C4 2J3 . . . E 4 0.113 -2.973 9.467 1 44.39 ? C4 2J3 503 A 1 HETATM 6 O O4 2J3 . . . E 4 2.717 -3.779 2.463 1 43.08 ? O4 2J3 503 A 1 HETATM 7 C C5 2J3 . . . E 4 0.227 -3.75 7.146 1 45.82 ? C5 2J3 503 A 1 HETATM 8 C C16 2J3 . . . E 4 1.032 -2.155 11.716 1 44.56 ? C16 2J3 503 A 1 HETATM 9 C C15 2J3 . . . E 4 -0.584 -4.719 6.291 1 48.18 ? C15 2J3 503 A 1 HETATM 10 C C6 2J3 . . . E 4 1.687 -3.871 6.724 1 44.75 ? C6 2J3 503 A 1 HETATM 11 C C7 2J3 . . . E 4 2.992 -3.289 4.8 1 43.83 ? C7 2J3 503 A 1 HETATM 12 C C14 2J3 . . . E 4 4.424 -2.886 5.14 1 42.01 ? C14 2J3 503 A 1 HETATM 13 C C8 2J3 . . . E 4 2.596 -2.734 3.434 1 43.44 ? C8 2J3 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #