data_4P8O # _model_server_result.job_id TcZsSyXHjaWLSXV4fFpH2Q _model_server_result.datetime_utc '2024-11-23 18:57:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4P8O # _exptl.entry_id 4P8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.375 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-3-[5-(5-fluoropyridin-3-yl)-7-(pyrimidin-2-yl)-1H-benzimidazol-2-yl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.42 _cell.angle_gamma 90 _cell.entry_id 4P8O _cell.length_a 143.46 _cell.length_b 55.73 _cell.length_c 50.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8O _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H16 F N7 O' _chem_comp.formula_weight 377.375 _chem_comp.id 883 _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-3-[5-(5-fluoropyridin-3-yl)-7-(pyrimidin-2-yl)-1H-benzimidazol-2-yl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 883 doub 1 n y C17 C18 883 sing 2 n y C16 N15 883 sing 3 n y C18 N19 883 doub 4 n y N15 C14 883 doub 5 n y N19 C14 883 sing 6 n y C14 C13 883 sing 7 n n O5 C4 883 doub 8 n n C2 C1 883 sing 9 n n C2 N3 883 sing 10 n n C13 C12 883 doub 11 n y C13 C20 883 sing 12 n y C4 N3 883 sing 13 n n C4 N6 883 sing 14 n n N21 C20 883 sing 15 n y N21 C7 883 sing 16 n y C12 C11 883 sing 17 n y C20 C9 883 doub 18 n y C7 N6 883 sing 19 n n C7 N8 883 doub 20 n y C11 C23 883 sing 21 n n C11 C10 883 doub 22 n y C9 N8 883 sing 23 n y C9 C10 883 sing 24 n y C24 C23 883 doub 25 n y C24 N25 883 sing 26 n y C23 C29 883 sing 27 n y N25 C26 883 doub 28 n y C29 C27 883 doub 29 n y C26 C27 883 sing 30 n y C27 F28 883 sing 31 n n C1 H1 883 sing 32 n n C1 H2 883 sing 33 n n C1 H3 883 sing 34 n n C2 H4 883 sing 35 n n C2 H5 883 sing 36 n n N3 H6 883 sing 37 n n N6 H7 883 sing 38 n n C10 H9 883 sing 39 n n C12 H10 883 sing 40 n n C16 H11 883 sing 41 n n C17 H12 883 sing 42 n n C18 H13 883 sing 43 n n N21 H14 883 sing 44 n n C24 H15 883 sing 45 n n C26 H16 883 sing 46 n n C29 H17 883 sing 47 n n # _atom_sites.entry_id 4P8O _atom_sites.fract_transf_matrix[1][1] 0.006971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001282 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 883 A 1 301 1 883 883 . D 2 883 B 1 301 1 883 883 . E 3 HOH A 1 401 112 HOH HOH . E 3 HOH A 2 402 33 HOH HOH . E 3 HOH A 3 403 74 HOH HOH . E 3 HOH A 4 404 64 HOH HOH . E 3 HOH A 5 405 164 HOH HOH . E 3 HOH A 6 406 169 HOH HOH . E 3 HOH A 7 407 10 HOH HOH . E 3 HOH A 8 408 126 HOH HOH . E 3 HOH A 9 409 186 HOH HOH . E 3 HOH A 10 410 134 HOH HOH . E 3 HOH A 11 411 187 HOH HOH . E 3 HOH A 12 412 94 HOH HOH . E 3 HOH A 13 413 87 HOH HOH . E 3 HOH A 14 414 96 HOH HOH . E 3 HOH A 15 415 73 HOH HOH . E 3 HOH A 16 416 83 HOH HOH . E 3 HOH A 17 417 28 HOH HOH . E 3 HOH A 18 418 45 HOH HOH . E 3 HOH A 19 419 59 HOH HOH . E 3 HOH A 20 420 101 HOH HOH . E 3 HOH A 21 421 47 HOH HOH . E 3 HOH A 22 422 131 HOH HOH . E 3 HOH A 23 423 53 HOH HOH . E 3 HOH A 24 424 155 HOH HOH . E 3 HOH A 25 425 35 HOH HOH . E 3 HOH A 26 426 15 HOH HOH . E 3 HOH A 27 427 90 HOH HOH . E 3 HOH A 28 428 142 HOH HOH . E 3 HOH A 29 429 84 HOH HOH . E 3 HOH A 30 430 39 HOH HOH . E 3 HOH A 31 431 1 HOH HOH . E 3 HOH A 32 432 11 HOH HOH . E 3 HOH A 33 433 12 HOH HOH . E 3 HOH A 34 434 17 HOH HOH . E 3 HOH A 35 435 21 HOH HOH . E 3 HOH A 36 436 24 HOH HOH . E 3 HOH A 37 437 31 HOH HOH . E 3 HOH A 38 438 38 HOH HOH . E 3 HOH A 39 439 41 HOH HOH . E 3 HOH A 40 440 46 HOH HOH . E 3 HOH A 41 441 48 HOH HOH . E 3 HOH A 42 442 51 HOH HOH . E 3 HOH A 43 443 54 HOH HOH . E 3 HOH A 44 444 56 HOH HOH . E 3 HOH A 45 445 57 HOH HOH . E 3 HOH A 46 446 63 HOH HOH . E 3 HOH A 47 447 65 HOH HOH . E 3 HOH A 48 448 67 HOH HOH . E 3 HOH A 49 449 68 HOH HOH . E 3 HOH A 50 450 71 HOH HOH . E 3 HOH A 51 451 82 HOH HOH . E 3 HOH A 52 452 102 HOH HOH . E 3 HOH A 53 453 103 HOH HOH . E 3 HOH A 54 454 107 HOH HOH . E 3 HOH A 55 455 110 HOH HOH . E 3 HOH A 56 456 120 HOH HOH . E 3 HOH A 57 457 127 HOH HOH . E 3 HOH A 58 458 137 HOH HOH . E 3 HOH A 59 459 138 HOH HOH . E 3 HOH A 60 460 139 HOH HOH . E 3 HOH A 61 461 144 HOH HOH . E 3 HOH A 62 462 149 HOH HOH . E 3 HOH A 63 463 156 HOH HOH . E 3 HOH A 64 464 159 HOH HOH . E 3 HOH A 65 465 161 HOH HOH . E 3 HOH A 66 466 162 HOH HOH . E 3 HOH A 67 467 163 HOH HOH . E 3 HOH A 68 468 165 HOH HOH . E 3 HOH A 69 469 173 HOH HOH . E 3 HOH A 70 470 176 HOH HOH . E 3 HOH A 71 471 182 HOH HOH . E 3 HOH A 72 472 184 HOH HOH . E 3 HOH A 73 473 185 HOH HOH . E 3 HOH A 74 474 188 HOH HOH . E 3 HOH A 75 475 189 HOH HOH . E 3 HOH A 76 476 191 HOH HOH . F 3 HOH B 1 401 43 HOH HOH . F 3 HOH B 2 402 141 HOH HOH . F 3 HOH B 3 403 111 HOH HOH . F 3 HOH B 4 404 147 HOH HOH . F 3 HOH B 5 405 190 HOH HOH . F 3 HOH B 6 406 29 HOH HOH . F 3 HOH B 7 407 180 HOH HOH . F 3 HOH B 8 408 50 HOH HOH . F 3 HOH B 9 409 92 HOH HOH . F 3 HOH B 10 410 55 HOH HOH . F 3 HOH B 11 411 80 HOH HOH . F 3 HOH B 12 412 8 HOH HOH . F 3 HOH B 13 413 106 HOH HOH . F 3 HOH B 14 414 105 HOH HOH . F 3 HOH B 15 415 22 HOH HOH . F 3 HOH B 16 416 171 HOH HOH . F 3 HOH B 17 417 25 HOH HOH . F 3 HOH B 18 418 179 HOH HOH . F 3 HOH B 19 419 60 HOH HOH . F 3 HOH B 20 420 44 HOH HOH . F 3 HOH B 21 421 58 HOH HOH . F 3 HOH B 22 422 157 HOH HOH . F 3 HOH B 23 423 118 HOH HOH . F 3 HOH B 24 424 177 HOH HOH . F 3 HOH B 25 425 167 HOH HOH . F 3 HOH B 26 426 128 HOH HOH . F 3 HOH B 27 427 61 HOH HOH . F 3 HOH B 28 428 151 HOH HOH . F 3 HOH B 29 429 91 HOH HOH . F 3 HOH B 30 430 88 HOH HOH . F 3 HOH B 31 431 172 HOH HOH . F 3 HOH B 32 432 183 HOH HOH . F 3 HOH B 33 433 158 HOH HOH . F 3 HOH B 34 434 3 HOH HOH . F 3 HOH B 35 435 4 HOH HOH . F 3 HOH B 36 436 5 HOH HOH . F 3 HOH B 37 437 6 HOH HOH . F 3 HOH B 38 438 7 HOH HOH . F 3 HOH B 39 439 9 HOH HOH . F 3 HOH B 40 440 13 HOH HOH . F 3 HOH B 41 441 14 HOH HOH . F 3 HOH B 42 442 16 HOH HOH . F 3 HOH B 43 443 18 HOH HOH . F 3 HOH B 44 444 20 HOH HOH . F 3 HOH B 45 445 23 HOH HOH . F 3 HOH B 46 446 27 HOH HOH . F 3 HOH B 47 447 30 HOH HOH . F 3 HOH B 48 448 32 HOH HOH . F 3 HOH B 49 449 34 HOH HOH . F 3 HOH B 50 450 36 HOH HOH . F 3 HOH B 51 451 37 HOH HOH . F 3 HOH B 52 452 40 HOH HOH . F 3 HOH B 53 453 49 HOH HOH . F 3 HOH B 54 454 52 HOH HOH . F 3 HOH B 55 455 62 HOH HOH . F 3 HOH B 56 456 66 HOH HOH . F 3 HOH B 57 457 70 HOH HOH . F 3 HOH B 58 458 78 HOH HOH . F 3 HOH B 59 459 79 HOH HOH . F 3 HOH B 60 460 85 HOH HOH . F 3 HOH B 61 461 93 HOH HOH . F 3 HOH B 62 462 95 HOH HOH . F 3 HOH B 63 463 97 HOH HOH . F 3 HOH B 64 464 100 HOH HOH . F 3 HOH B 65 465 108 HOH HOH . F 3 HOH B 66 466 113 HOH HOH . F 3 HOH B 67 467 119 HOH HOH . F 3 HOH B 68 468 123 HOH HOH . F 3 HOH B 69 469 124 HOH HOH . F 3 HOH B 70 470 129 HOH HOH . F 3 HOH B 71 471 132 HOH HOH . F 3 HOH B 72 472 136 HOH HOH . F 3 HOH B 73 473 140 HOH HOH . F 3 HOH B 74 474 146 HOH HOH . F 3 HOH B 75 475 148 HOH HOH . F 3 HOH B 76 476 150 HOH HOH . F 3 HOH B 77 477 152 HOH HOH . F 3 HOH B 78 478 153 HOH HOH . F 3 HOH B 79 479 154 HOH HOH . F 3 HOH B 80 480 160 HOH HOH . F 3 HOH B 81 481 166 HOH HOH . F 3 HOH B 82 482 168 HOH HOH . F 3 HOH B 83 483 170 HOH HOH . F 3 HOH B 84 484 174 HOH HOH . F 3 HOH B 85 485 175 HOH HOH . F 3 HOH B 86 486 178 HOH HOH . F 3 HOH B 87 487 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 883 . . . C 2 42.691 -1.295 19.293 1 6.87 ? C1 883 301 A 1 HETATM 2 C C2 883 . . . C 2 44.174 -0.922 19.381 1 11.48 ? C2 883 301 A 1 HETATM 3 N N3 883 . . . C 2 44.989 -1.733 18.454 1 13.52 ? N3 883 301 A 1 HETATM 4 C C4 883 . . . C 2 46.258 -2.168 18.706 1 16.55 ? C4 883 301 A 1 HETATM 5 O O5 883 . . . C 2 46.86 -1.898 19.752 1 17.16 ? O5 883 301 A 1 HETATM 6 N N6 883 . . . C 2 46.855 -2.901 17.735 1 19.91 ? N6 883 301 A 1 HETATM 7 C C7 883 . . . C 2 48.13 -3.459 17.837 1 20.33 ? C7 883 301 A 1 HETATM 8 N N8 883 . . . C 2 48.555 -4.481 17.126 1 17.39 ? N8 883 301 A 1 HETATM 9 C C9 883 . . . C 2 49.812 -4.803 17.519 1 19.22 ? C9 883 301 A 1 HETATM 10 C C10 883 . . . C 2 50.74 -5.751 17.076 1 18.44 ? C10 883 301 A 1 HETATM 11 C C11 883 . . . C 2 51.99 -5.813 17.679 1 19.99 ? C11 883 301 A 1 HETATM 12 C C12 883 . . . C 2 52.324 -4.952 18.731 1 20.82 ? C12 883 301 A 1 HETATM 13 C C13 883 . . . C 2 51.414 -4.004 19.203 1 22.25 ? C13 883 301 A 1 HETATM 14 C C14 883 . . . C 2 51.8 -3.02 20.256 1 22.31 ? C14 883 301 A 1 HETATM 15 N N15 883 . . . C 2 50.877 -2.144 20.697 1 23.01 ? N15 883 301 A 1 HETATM 16 C C16 883 . . . C 2 51.198 -1.238 21.633 1 24.27 ? C16 883 301 A 1 HETATM 17 C C17 883 . . . C 2 52.528 -1.163 22.107 1 22.07 ? C17 883 301 A 1 HETATM 18 C C18 883 . . . C 2 53.483 -2.055 21.6 1 17.14 ? C18 883 301 A 1 HETATM 19 N N19 883 . . . C 2 53.088 -2.946 20.683 1 20.23 ? N19 883 301 A 1 HETATM 20 C C20 883 . . . C 2 50.155 -3.924 18.575 1 21.63 ? C20 883 301 A 1 HETATM 21 N N21 883 . . . C 2 49.077 -3.087 18.746 1 18.49 ? N21 883 301 A 1 HETATM 22 C C23 883 . . . C 2 52.948 -6.859 17.257 1 20.88 ? C23 883 301 A 1 HETATM 23 C C24 883 . . . C 2 52.481 -8.152 16.984 1 18.85 ? C24 883 301 A 1 HETATM 24 N N25 883 . . . C 2 53.301 -9.108 16.581 1 15.73 ? N25 883 301 A 1 HETATM 25 C C26 883 . . . C 2 54.6 -8.896 16.474 1 18.92 ? C26 883 301 A 1 HETATM 26 C C27 883 . . . C 2 55.151 -7.648 16.743 1 25.29 ? C27 883 301 A 1 HETATM 27 F F28 883 . . . C 2 56.474 -7.453 16.559 1 30.79 ? F28 883 301 A 1 HETATM 28 C C29 883 . . . C 2 54.329 -6.604 17.176 1 22.8 ? C29 883 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #