data_4P8O
#
_model_server_result.job_id            cQgwMBNhPUjYcyr4UiEcCg 
_model_server_result.datetime_utc      '2025-02-17 11:31:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4P8O 
#
_exptl.entry_id    4P8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.375 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-ethyl-3-[5-(5-fluoropyridin-3-yl)-7-(pyrimidin-2-yl)-1H-benzimidazol-2-yl]urea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.42 
_cell.angle_gamma         90 
_cell.entry_id            4P8O 
_cell.length_a            143.46 
_cell.length_b            55.73 
_cell.length_c            50.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P8O 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C19 H16 F N7 O' 
_chem_comp.formula_weight    377.375 
_chem_comp.id                883 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-ethyl-3-[5-(5-fluoropyridin-3-yl)-7-(pyrimidin-2-yl)-1H-benzimidazol-2-yl]urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C16 883 doub 1 n y 
C17 C18 883 sing 2 n y 
C16 N15 883 sing 3 n y 
C18 N19 883 doub 4 n y 
N15 C14 883 doub 5 n y 
N19 C14 883 sing 6 n y 
C14 C13 883 sing 7 n n 
O5 C4 883 doub 8 n n 
C2 C1 883 sing 9 n n 
C2 N3 883 sing 10 n n 
C13 C12 883 doub 11 n y 
C13 C20 883 sing 12 n y 
C4 N3 883 sing 13 n n 
C4 N6 883 sing 14 n n 
N21 C20 883 sing 15 n y 
N21 C7 883 sing 16 n y 
C12 C11 883 sing 17 n y 
C20 C9 883 doub 18 n y 
C7 N6 883 sing 19 n n 
C7 N8 883 doub 20 n y 
C11 C23 883 sing 21 n n 
C11 C10 883 doub 22 n y 
C9 N8 883 sing 23 n y 
C9 C10 883 sing 24 n y 
C24 C23 883 doub 25 n y 
C24 N25 883 sing 26 n y 
C23 C29 883 sing 27 n y 
N25 C26 883 doub 28 n y 
C29 C27 883 doub 29 n y 
C26 C27 883 sing 30 n y 
C27 F28 883 sing 31 n n 
C1 H1 883 sing 32 n n 
C1 H2 883 sing 33 n n 
C1 H3 883 sing 34 n n 
C2 H4 883 sing 35 n n 
C2 H5 883 sing 36 n n 
N3 H6 883 sing 37 n n 
N6 H7 883 sing 38 n n 
C10 H9 883 sing 39 n n 
C12 H10 883 sing 40 n n 
C16 H11 883 sing 41 n n 
C17 H12 883 sing 42 n n 
C18 H13 883 sing 43 n n 
N21 H14 883 sing 44 n n 
C24 H15 883 sing 45 n n 
C26 H16 883 sing 46 n n 
C29 H17 883 sing 47 n n 
#
_atom_sites.entry_id                     4P8O 
_atom_sites.fract_transf_matrix[1][1]    0.006971 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001282 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017944 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 883 A 1 301 1 883 883 . 
D 2 883 B 1 301 1 883 883 . 
E 3 HOH A 1 401 112 HOH HOH . 
E 3 HOH A 2 402 33 HOH HOH . 
E 3 HOH A 3 403 74 HOH HOH . 
E 3 HOH A 4 404 64 HOH HOH . 
E 3 HOH A 5 405 164 HOH HOH . 
E 3 HOH A 6 406 169 HOH HOH . 
E 3 HOH A 7 407 10 HOH HOH . 
E 3 HOH A 8 408 126 HOH HOH . 
E 3 HOH A 9 409 186 HOH HOH . 
E 3 HOH A 10 410 134 HOH HOH . 
E 3 HOH A 11 411 187 HOH HOH . 
E 3 HOH A 12 412 94 HOH HOH . 
E 3 HOH A 13 413 87 HOH HOH . 
E 3 HOH A 14 414 96 HOH HOH . 
E 3 HOH A 15 415 73 HOH HOH . 
E 3 HOH A 16 416 83 HOH HOH . 
E 3 HOH A 17 417 28 HOH HOH . 
E 3 HOH A 18 418 45 HOH HOH . 
E 3 HOH A 19 419 59 HOH HOH . 
E 3 HOH A 20 420 101 HOH HOH . 
E 3 HOH A 21 421 47 HOH HOH . 
E 3 HOH A 22 422 131 HOH HOH . 
E 3 HOH A 23 423 53 HOH HOH . 
E 3 HOH A 24 424 155 HOH HOH . 
E 3 HOH A 25 425 35 HOH HOH . 
E 3 HOH A 26 426 15 HOH HOH . 
E 3 HOH A 27 427 90 HOH HOH . 
E 3 HOH A 28 428 142 HOH HOH . 
E 3 HOH A 29 429 84 HOH HOH . 
E 3 HOH A 30 430 39 HOH HOH . 
E 3 HOH A 31 431 1 HOH HOH . 
E 3 HOH A 32 432 11 HOH HOH . 
E 3 HOH A 33 433 12 HOH HOH . 
E 3 HOH A 34 434 17 HOH HOH . 
E 3 HOH A 35 435 21 HOH HOH . 
E 3 HOH A 36 436 24 HOH HOH . 
E 3 HOH A 37 437 31 HOH HOH . 
E 3 HOH A 38 438 38 HOH HOH . 
E 3 HOH A 39 439 41 HOH HOH . 
E 3 HOH A 40 440 46 HOH HOH . 
E 3 HOH A 41 441 48 HOH HOH . 
E 3 HOH A 42 442 51 HOH HOH . 
E 3 HOH A 43 443 54 HOH HOH . 
E 3 HOH A 44 444 56 HOH HOH . 
E 3 HOH A 45 445 57 HOH HOH . 
E 3 HOH A 46 446 63 HOH HOH . 
E 3 HOH A 47 447 65 HOH HOH . 
E 3 HOH A 48 448 67 HOH HOH . 
E 3 HOH A 49 449 68 HOH HOH . 
E 3 HOH A 50 450 71 HOH HOH . 
E 3 HOH A 51 451 82 HOH HOH . 
E 3 HOH A 52 452 102 HOH HOH . 
E 3 HOH A 53 453 103 HOH HOH . 
E 3 HOH A 54 454 107 HOH HOH . 
E 3 HOH A 55 455 110 HOH HOH . 
E 3 HOH A 56 456 120 HOH HOH . 
E 3 HOH A 57 457 127 HOH HOH . 
E 3 HOH A 58 458 137 HOH HOH . 
E 3 HOH A 59 459 138 HOH HOH . 
E 3 HOH A 60 460 139 HOH HOH . 
E 3 HOH A 61 461 144 HOH HOH . 
E 3 HOH A 62 462 149 HOH HOH . 
E 3 HOH A 63 463 156 HOH HOH . 
E 3 HOH A 64 464 159 HOH HOH . 
E 3 HOH A 65 465 161 HOH HOH . 
E 3 HOH A 66 466 162 HOH HOH . 
E 3 HOH A 67 467 163 HOH HOH . 
E 3 HOH A 68 468 165 HOH HOH . 
E 3 HOH A 69 469 173 HOH HOH . 
E 3 HOH A 70 470 176 HOH HOH . 
E 3 HOH A 71 471 182 HOH HOH . 
E 3 HOH A 72 472 184 HOH HOH . 
E 3 HOH A 73 473 185 HOH HOH . 
E 3 HOH A 74 474 188 HOH HOH . 
E 3 HOH A 75 475 189 HOH HOH . 
E 3 HOH A 76 476 191 HOH HOH . 
F 3 HOH B 1 401 43 HOH HOH . 
F 3 HOH B 2 402 141 HOH HOH . 
F 3 HOH B 3 403 111 HOH HOH . 
F 3 HOH B 4 404 147 HOH HOH . 
F 3 HOH B 5 405 190 HOH HOH . 
F 3 HOH B 6 406 29 HOH HOH . 
F 3 HOH B 7 407 180 HOH HOH . 
F 3 HOH B 8 408 50 HOH HOH . 
F 3 HOH B 9 409 92 HOH HOH . 
F 3 HOH B 10 410 55 HOH HOH . 
F 3 HOH B 11 411 80 HOH HOH . 
F 3 HOH B 12 412 8 HOH HOH . 
F 3 HOH B 13 413 106 HOH HOH . 
F 3 HOH B 14 414 105 HOH HOH . 
F 3 HOH B 15 415 22 HOH HOH . 
F 3 HOH B 16 416 171 HOH HOH . 
F 3 HOH B 17 417 25 HOH HOH . 
F 3 HOH B 18 418 179 HOH HOH . 
F 3 HOH B 19 419 60 HOH HOH . 
F 3 HOH B 20 420 44 HOH HOH . 
F 3 HOH B 21 421 58 HOH HOH . 
F 3 HOH B 22 422 157 HOH HOH . 
F 3 HOH B 23 423 118 HOH HOH . 
F 3 HOH B 24 424 177 HOH HOH . 
F 3 HOH B 25 425 167 HOH HOH . 
F 3 HOH B 26 426 128 HOH HOH . 
F 3 HOH B 27 427 61 HOH HOH . 
F 3 HOH B 28 428 151 HOH HOH . 
F 3 HOH B 29 429 91 HOH HOH . 
F 3 HOH B 30 430 88 HOH HOH . 
F 3 HOH B 31 431 172 HOH HOH . 
F 3 HOH B 32 432 183 HOH HOH . 
F 3 HOH B 33 433 158 HOH HOH . 
F 3 HOH B 34 434 3 HOH HOH . 
F 3 HOH B 35 435 4 HOH HOH . 
F 3 HOH B 36 436 5 HOH HOH . 
F 3 HOH B 37 437 6 HOH HOH . 
F 3 HOH B 38 438 7 HOH HOH . 
F 3 HOH B 39 439 9 HOH HOH . 
F 3 HOH B 40 440 13 HOH HOH . 
F 3 HOH B 41 441 14 HOH HOH . 
F 3 HOH B 42 442 16 HOH HOH . 
F 3 HOH B 43 443 18 HOH HOH . 
F 3 HOH B 44 444 20 HOH HOH . 
F 3 HOH B 45 445 23 HOH HOH . 
F 3 HOH B 46 446 27 HOH HOH . 
F 3 HOH B 47 447 30 HOH HOH . 
F 3 HOH B 48 448 32 HOH HOH . 
F 3 HOH B 49 449 34 HOH HOH . 
F 3 HOH B 50 450 36 HOH HOH . 
F 3 HOH B 51 451 37 HOH HOH . 
F 3 HOH B 52 452 40 HOH HOH . 
F 3 HOH B 53 453 49 HOH HOH . 
F 3 HOH B 54 454 52 HOH HOH . 
F 3 HOH B 55 455 62 HOH HOH . 
F 3 HOH B 56 456 66 HOH HOH . 
F 3 HOH B 57 457 70 HOH HOH . 
F 3 HOH B 58 458 78 HOH HOH . 
F 3 HOH B 59 459 79 HOH HOH . 
F 3 HOH B 60 460 85 HOH HOH . 
F 3 HOH B 61 461 93 HOH HOH . 
F 3 HOH B 62 462 95 HOH HOH . 
F 3 HOH B 63 463 97 HOH HOH . 
F 3 HOH B 64 464 100 HOH HOH . 
F 3 HOH B 65 465 108 HOH HOH . 
F 3 HOH B 66 466 113 HOH HOH . 
F 3 HOH B 67 467 119 HOH HOH . 
F 3 HOH B 68 468 123 HOH HOH . 
F 3 HOH B 69 469 124 HOH HOH . 
F 3 HOH B 70 470 129 HOH HOH . 
F 3 HOH B 71 471 132 HOH HOH . 
F 3 HOH B 72 472 136 HOH HOH . 
F 3 HOH B 73 473 140 HOH HOH . 
F 3 HOH B 74 474 146 HOH HOH . 
F 3 HOH B 75 475 148 HOH HOH . 
F 3 HOH B 76 476 150 HOH HOH . 
F 3 HOH B 77 477 152 HOH HOH . 
F 3 HOH B 78 478 153 HOH HOH . 
F 3 HOH B 79 479 154 HOH HOH . 
F 3 HOH B 80 480 160 HOH HOH . 
F 3 HOH B 81 481 166 HOH HOH . 
F 3 HOH B 82 482 168 HOH HOH . 
F 3 HOH B 83 483 170 HOH HOH . 
F 3 HOH B 84 484 174 HOH HOH . 
F 3 HOH B 85 485 175 HOH HOH . 
F 3 HOH B 86 486 178 HOH HOH . 
F 3 HOH B 87 487 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 883 . . . D 2 11.811 -4.974 -1.63 1 17.33 ? C1 883 301 B 1 
HETATM 2 C C2 883 . . . D 2 10.313 -4.851 -1.88 1 21.02 ? C2 883 301 B 1 
HETATM 3 N N3 883 . . . D 2 9.683 -5.813 -0.98 1 25.02 ? N3 883 301 B 1 
HETATM 4 C C4 883 . . . D 2 8.592 -6.545 -1.278 1 24.63 ? C4 883 301 B 1 
HETATM 5 O O5 883 . . . D 2 8.003 -6.418 -2.339 1 24.31 ? O5 883 301 B 1 
HETATM 6 N N6 883 . . . D 2 8.182 -7.415 -0.332 1 24.4 ? N6 883 301 B 1 
HETATM 7 C C7 883 . . . D 2 7.135 -8.312 -0.481 1 24.68 ? C7 883 301 B 1 
HETATM 8 N N8 883 . . . D 2 7.083 -9.471 0.11 1 26.86 ? N8 883 301 B 1 
HETATM 9 C C9 883 . . . D 2 5.931 -10.122 -0.211 1 27.02 ? C9 883 301 B 1 
HETATM 10 C C10 883 . . . D 2 5.382 -11.367 0.154 1 24.4 ? C10 883 301 B 1 
HETATM 11 C C11 883 . . . D 2 4.154 -11.774 -0.372 1 24.79 ? C11 883 301 B 1 
HETATM 12 C C12 883 . . . D 2 3.466 -10.923 -1.254 1 26.61 ? C12 883 301 B 1 
HETATM 13 C C13 883 . . . D 2 3.998 -9.684 -1.633 1 26.37 ? C13 883 301 B 1 
HETATM 14 C C14 883 . . . D 2 3.235 -8.788 -2.536 1 25.97 ? C14 883 301 B 1 
HETATM 15 N N15 883 . . . D 2 3.805 -7.662 -2.993 1 25.65 ? N15 883 301 B 1 
HETATM 16 C C16 883 . . . D 2 3.14 -6.839 -3.811 1 29.39 ? C16 883 301 B 1 
HETATM 17 C C17 883 . . . D 2 1.821 -7.144 -4.182 1 31.19 ? C17 883 301 B 1 
HETATM 18 C C18 883 . . . D 2 1.257 -8.331 -3.681 1 32.15 ? C18 883 301 B 1 
HETATM 19 N N19 883 . . . D 2 1.977 -9.113 -2.868 1 28.76 ? N19 883 301 B 1 
HETATM 20 C C20 883 . . . D 2 5.244 -9.285 -1.11 1 25.9 ? C20 883 301 B 1 
HETATM 21 N N21 883 . . . D 2 6.039 -8.168 -1.269 1 25.14 ? N21 883 301 B 1 
HETATM 22 C C23 883 . . . D 2 3.578 -13.096 0 1 27.17 ? C23 883 301 B 1 
HETATM 23 C C24 883 . . . D 2 4.368 -14.253 -0.059 1 29.48 ? C24 883 301 B 1 
HETATM 24 N N25 883 . . . D 2 3.883 -15.439 0.299 1 29.99 ? N25 883 301 B 1 
HETATM 25 C C26 883 . . . D 2 2.635 -15.603 0.699 1 28.69 ? C26 883 301 B 1 
HETATM 26 C C27 883 . . . D 2 1.779 -14.519 0.751 1 32.43 ? C27 883 301 B 1 
HETATM 27 F F28 883 . . . D 2 0.521 -14.707 1.206 1 40.47 ? F28 883 301 B 1 
HETATM 28 C C29 883 . . . D 2 2.241 -13.241 0.42 1 28.63 ? C29 883 301 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#