data_4P8Q # _model_server_result.job_id 5EC_5X5_KBHQUt36Sn1Dnw _model_server_result.datetime_utc '2024-11-16 09:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1101}' # _entry.id 4P8Q # _exptl.entry_id 4P8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.12 _cell.angle_gamma 90 _cell.entry_id 4P8Q _cell.length_a 68.323 _cell.length_b 256.051 _cell.length_c 71.132 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 P N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1102 NAG 2 n C NAG 2 C 2 NAG A 1103 NAG 2 n D NAG 1 D 1 NAG A 1107 NAG 2 n D NAG 2 D 2 NAG A 1108 NAG 2 n E NAG 1 E 1 NAG B 1102 NAG 2 n E NAG 2 E 2 NAG B 1103 NAG 2 n F NAG 1 F 1 NAG B 1105 NAG 2 n F NAG 2 F 2 NAG B 1106 NAG 2 n G NAG 1 G 1 NAG B 1108 NAG 2 n G NAG 2 G 2 NAG B 1109 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 675 A CYS 828 1_555 A SG CYS 682 A CYS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 B SG CYS 675 B CYS 828 1_555 B SG CYS 682 B CYS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 31 A ASN 184 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 62 A ASN 215 1_555 I C1 NAG . A NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 103 A ASN 256 1_555 J C1 NAG . A NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 A ND2 ASN 113 A ASN 266 1_555 K C1 NAG . A NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 215 A ASN 368 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 A ND2 ASN 529 A ASN 682 1_555 L C1 NAG . A NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 A ND2 ASN 607 A ASN 760 1_555 M C1 NAG . A NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 A ND2 ASN 697 A ASN 850 1_555 N C1 NAG . A NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 B ND2 ASN 31 B ASN 184 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale10 B ND2 ASN 62 B ASN 215 1_555 Q C1 NAG . B NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 B ND2 ASN 103 B ASN 256 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 B ND2 ASN 113 B ASN 266 1_555 R C1 NAG . B NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 B ND2 ASN 215 B ASN 368 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale14 B ND2 ASN 529 B ASN 682 1_555 S C1 NAG . B NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale15 B ND2 ASN 607 B ASN 760 1_555 T C1 NAG . B NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale16 B ND2 ASN 697 B ASN 850 1_555 U C1 NAG . B NAG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale18 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale19 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale20 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale21 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? metalc ? metalc1 A NE2 HIS 311 A HIS 464 1_555 H ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc2 A NE2 HIS 315 A HIS 468 1_555 H ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 A OE1 GLU 334 A GLU 487 1_555 H ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc4 A OE2 GLU 334 A GLU 487 1_555 H ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 H ZN ZN . A ZN 1101 1_555 O O UNL . A UNL 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc6 B NE2 HIS 311 B HIS 464 1_555 P ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc7 B NE2 HIS 315 B HIS 468 1_555 P ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 B OE1 GLU 334 B GLU 487 1_555 P ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc9 B OE2 GLU 334 B GLU 487 1_555 P ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc10 P ZN ZN . B ZN 1101 1_555 V O UNL . B UNL 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4P8Q _atom_sites.fract_transf_matrix[1][1] 0.014636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ZN A 1 1101 1101 ZN ZN . I 4 NAG A 1 1104 1104 NAG NAG . J 4 NAG A 1 1105 1105 NAG NAG . K 4 NAG A 1 1106 1106 NAG NAG . L 4 NAG A 1 1109 1109 NAG NAG . M 4 NAG A 1 1110 1110 NAG NAG . N 4 NAG A 1 1111 1111 NAG NAG . O 5 UNL A 1 1112 1112 UNL UNL . P 3 ZN B 1 1101 1101 ZN ZN . Q 4 NAG B 1 1104 1104 NAG NAG . R 4 NAG B 1 1107 1107 NAG NAG . S 4 NAG B 1 1110 1110 NAG NAG . T 4 NAG B 1 1111 1111 NAG NAG . U 4 NAG B 1 1112 1112 NAG NAG . V 5 UNL B 1 1113 1113 UNL UNL . W 6 HOH A 1 1201 1201 HOH HOH . W 6 HOH A 2 1202 1202 HOH HOH . W 6 HOH A 3 1203 1203 HOH HOH . W 6 HOH A 4 1204 1204 HOH HOH . W 6 HOH A 5 1205 1205 HOH HOH . W 6 HOH A 6 1206 1206 HOH HOH . W 6 HOH A 7 1207 1207 HOH HOH . W 6 HOH A 8 1208 1208 HOH HOH . W 6 HOH A 9 1209 1209 HOH HOH . W 6 HOH A 10 1210 1210 HOH HOH . W 6 HOH A 11 1211 1211 HOH HOH . W 6 HOH A 12 1212 1212 HOH HOH . W 6 HOH A 13 1213 1213 HOH HOH . W 6 HOH A 14 1214 1214 HOH HOH . W 6 HOH A 15 1215 1215 HOH HOH . W 6 HOH A 16 1216 1216 HOH HOH . W 6 HOH A 17 1217 1217 HOH HOH . W 6 HOH A 18 1218 1218 HOH HOH . W 6 HOH A 19 1219 1219 HOH HOH . W 6 HOH A 20 1220 1220 HOH HOH . W 6 HOH A 21 1221 1221 HOH HOH . W 6 HOH A 22 1222 1222 HOH HOH . W 6 HOH A 23 1223 1223 HOH HOH . W 6 HOH A 24 1224 1224 HOH HOH . W 6 HOH A 25 1225 1225 HOH HOH . W 6 HOH A 26 1226 1226 HOH HOH . W 6 HOH A 27 1227 1227 HOH HOH . W 6 HOH A 28 1228 1228 HOH HOH . W 6 HOH A 29 1229 1229 HOH HOH . W 6 HOH A 30 1230 1230 HOH HOH . W 6 HOH A 31 1231 1231 HOH HOH . W 6 HOH A 32 1232 1232 HOH HOH . W 6 HOH A 33 1233 1233 HOH HOH . W 6 HOH A 34 1234 1234 HOH HOH . W 6 HOH A 35 1235 1235 HOH HOH . W 6 HOH A 36 1236 1236 HOH HOH . W 6 HOH A 37 1237 1237 HOH HOH . W 6 HOH A 38 1238 1238 HOH HOH . W 6 HOH A 39 1239 1239 HOH HOH . W 6 HOH A 40 1240 1240 HOH HOH . W 6 HOH A 41 1241 1241 HOH HOH . W 6 HOH A 42 1242 1242 HOH HOH . W 6 HOH A 43 1243 1243 HOH HOH . W 6 HOH A 44 1244 1244 HOH HOH . W 6 HOH A 45 1245 1245 HOH HOH . X 6 HOH B 1 1201 1201 HOH HOH . X 6 HOH B 2 1202 1202 HOH HOH . X 6 HOH B 3 1203 1203 HOH HOH . X 6 HOH B 4 1204 1204 HOH HOH . X 6 HOH B 5 1205 1205 HOH HOH . X 6 HOH B 6 1206 1206 HOH HOH . X 6 HOH B 7 1207 1207 HOH HOH . X 6 HOH B 8 1208 1208 HOH HOH . X 6 HOH B 9 1209 1209 HOH HOH . X 6 HOH B 10 1210 1210 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 3 _atom_site.Cartn_x 74.202 _atom_site.Cartn_y -70.805 _atom_site.Cartn_z 17.776 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 54.26 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #