data_4P8T # _model_server_result.job_id KRwYb9qXpbn1HgMpCYHw2A _model_server_result.datetime_utc '2025-02-18 08:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4P8T # _exptl.entry_id 4P8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.84 _cell.angle_gamma 90 _cell.entry_id 4P8T _cell.length_a 77.231 _cell.length_b 83.039 _cell.length_c 80.729 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8T _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 115 n n PA O2A FAD sing 116 n n PA O5B FAD sing 117 n n PA O3P FAD sing 118 n n O2A HOA2 FAD sing 119 n n O5B C5B FAD sing 120 n n C5B C4B FAD sing 121 n n C5B H51A FAD sing 122 n n C5B H52A FAD sing 123 n n C4B O4B FAD sing 124 n n C4B C3B FAD sing 125 n n C4B H4B FAD sing 126 n n O4B C1B FAD sing 127 n n C3B O3B FAD sing 128 n n C3B C2B FAD sing 129 n n C3B H3B FAD sing 130 n n O3B HO3A FAD sing 131 n n C2B O2B FAD sing 132 n n C2B C1B FAD sing 133 n n C2B H2B FAD sing 134 n n O2B HO2A FAD sing 135 n n C1B N9A FAD sing 136 n n C1B H1B FAD sing 137 n n N9A C8A FAD sing 138 n y N9A C4A FAD sing 139 n y C8A N7A FAD doub 140 n y C8A H8A FAD sing 141 n n N7A C5A FAD sing 142 n y C5A C6A FAD sing 143 n y C5A C4A FAD doub 144 n y C6A N6A FAD sing 145 n n C6A N1A FAD doub 146 n y N6A H61A FAD sing 147 n n N6A H62A FAD sing 148 n n N1A C2A FAD sing 149 n y C2A N3A FAD doub 150 n y C2A H2A FAD sing 151 n n N3A C4A FAD sing 152 n y N1 C2 FAD sing 153 n n N1 C10 FAD doub 154 n n C2 O2 FAD doub 155 n n C2 N3 FAD sing 156 n n N3 C4 FAD sing 157 n n N3 HN3 FAD sing 158 n n C4 O4 FAD doub 159 n n C4 C4X FAD sing 160 n n C4X N5 FAD doub 161 n n C4X C10 FAD sing 162 n n N5 C5X FAD sing 163 n n C5X C6 FAD doub 164 n y C5X C9A FAD sing 165 n y C6 C7 FAD sing 166 n y C6 H6 FAD sing 167 n n C7 C7M FAD sing 168 n n C7 C8 FAD doub 169 n y C7M HM71 FAD sing 170 n n C7M HM72 FAD sing 171 n n C7M HM73 FAD sing 172 n n C8 C8M FAD sing 173 n n C8 C9 FAD sing 174 n y C8M HM81 FAD sing 175 n n C8M HM82 FAD sing 176 n n C8M HM83 FAD sing 177 n n C9 C9A FAD doub 178 n y C9 H9 FAD sing 179 n n C9A N10 FAD sing 180 n n N10 C10 FAD sing 181 n n N10 C1' FAD sing 182 n n C1' C2' FAD sing 183 n n C1' "H1'1" FAD sing 184 n n C1' "H1'2" FAD sing 185 n n C2' O2' FAD sing 186 n n C2' C3' FAD sing 187 n n C2' H2' FAD sing 188 n n O2' HO2' FAD sing 189 n n C3' O3' FAD sing 190 n n C3' C4' FAD sing 191 n n C3' H3' FAD sing 192 n n O3' HO3' FAD sing 193 n n C4' O4' FAD sing 194 n n C4' C5' FAD sing 195 n n C4' H4' FAD sing 196 n n O4' HO4' FAD sing 197 n n C5' O5' FAD sing 198 n n C5' "H5'1" FAD sing 199 n n C5' "H5'2" FAD sing 200 n n O5' P FAD sing 201 n n P O1P FAD doub 202 n n P O2P FAD sing 203 n n P O3P FAD sing 204 n n O2P HOP2 FAD sing 205 n n # _atom_sites.entry_id 4P8T _atom_sites.fract_transf_matrix[1][1] 0.012948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002951 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 R26 A 1 502 550 R26 R26 . E 4 IMD A 1 503 560 IMD IMD . F 5 2J3 A 1 504 570 2J3 23B . G 2 FAD B 1 501 501 FAD FAD . H 3 R26 B 1 502 550 R26 R26 . I 6 HOH A 1 601 76 HOH HOH . I 6 HOH A 2 602 98 HOH HOH . I 6 HOH A 3 603 15 HOH HOH . I 6 HOH A 4 604 74 HOH HOH . I 6 HOH A 5 605 30 HOH HOH . I 6 HOH A 6 606 8 HOH HOH . I 6 HOH A 7 607 18 HOH HOH . I 6 HOH A 8 608 25 HOH HOH . I 6 HOH A 9 609 10 HOH HOH . I 6 HOH A 10 610 2 HOH HOH . I 6 HOH A 11 611 1 HOH HOH . I 6 HOH A 12 612 3 HOH HOH . I 6 HOH A 13 613 4 HOH HOH . I 6 HOH A 14 614 9 HOH HOH . I 6 HOH A 15 615 14 HOH HOH . I 6 HOH A 16 616 16 HOH HOH . I 6 HOH A 17 617 17 HOH HOH . I 6 HOH A 18 618 19 HOH HOH . I 6 HOH A 19 619 21 HOH HOH . I 6 HOH A 20 620 22 HOH HOH . I 6 HOH A 21 621 26 HOH HOH . I 6 HOH A 22 622 28 HOH HOH . I 6 HOH A 23 623 29 HOH HOH . I 6 HOH A 24 624 32 HOH HOH . I 6 HOH A 25 625 33 HOH HOH . I 6 HOH A 26 626 35 HOH HOH . I 6 HOH A 27 627 39 HOH HOH . I 6 HOH A 28 628 41 HOH HOH . I 6 HOH A 29 629 42 HOH HOH . I 6 HOH A 30 630 43 HOH HOH . I 6 HOH A 31 631 44 HOH HOH . I 6 HOH A 32 632 45 HOH HOH . I 6 HOH A 33 633 46 HOH HOH . I 6 HOH A 34 634 47 HOH HOH . I 6 HOH A 35 635 48 HOH HOH . I 6 HOH A 36 636 49 HOH HOH . I 6 HOH A 37 637 50 HOH HOH . I 6 HOH A 38 638 51 HOH HOH . I 6 HOH A 39 639 52 HOH HOH . I 6 HOH A 40 640 53 HOH HOH . I 6 HOH A 41 641 54 HOH HOH . I 6 HOH A 42 642 55 HOH HOH . I 6 HOH A 43 643 56 HOH HOH . I 6 HOH A 44 644 57 HOH HOH . I 6 HOH A 45 645 59 HOH HOH . I 6 HOH A 46 646 60 HOH HOH . I 6 HOH A 47 647 61 HOH HOH . I 6 HOH A 48 648 62 HOH HOH . I 6 HOH A 49 649 63 HOH HOH . I 6 HOH A 50 650 64 HOH HOH . I 6 HOH A 51 651 65 HOH HOH . I 6 HOH A 52 652 66 HOH HOH . I 6 HOH A 53 653 67 HOH HOH . I 6 HOH A 54 654 68 HOH HOH . I 6 HOH A 55 655 69 HOH HOH . I 6 HOH A 56 656 70 HOH HOH . I 6 HOH A 57 657 72 HOH HOH . I 6 HOH A 58 658 73 HOH HOH . I 6 HOH A 59 659 75 HOH HOH . I 6 HOH A 60 660 77 HOH HOH . J 6 HOH B 1 601 24 HOH HOH . J 6 HOH B 2 602 31 HOH HOH . J 6 HOH B 3 603 5 HOH HOH . J 6 HOH B 4 604 6 HOH HOH . J 6 HOH B 5 605 7 HOH HOH . J 6 HOH B 6 606 11 HOH HOH . J 6 HOH B 7 607 12 HOH HOH . J 6 HOH B 8 608 13 HOH HOH . J 6 HOH B 9 609 20 HOH HOH . J 6 HOH B 10 610 23 HOH HOH . J 6 HOH B 11 611 27 HOH HOH . J 6 HOH B 12 612 34 HOH HOH . J 6 HOH B 13 613 36 HOH HOH . J 6 HOH B 14 614 37 HOH HOH . J 6 HOH B 15 615 38 HOH HOH . J 6 HOH B 16 616 40 HOH HOH . J 6 HOH B 17 617 78 HOH HOH . J 6 HOH B 18 618 79 HOH HOH . J 6 HOH B 19 619 80 HOH HOH . J 6 HOH B 20 620 81 HOH HOH . J 6 HOH B 21 621 82 HOH HOH . J 6 HOH B 22 622 83 HOH HOH . J 6 HOH B 23 623 84 HOH HOH . J 6 HOH B 24 624 85 HOH HOH . J 6 HOH B 25 625 86 HOH HOH . J 6 HOH B 26 626 87 HOH HOH . J 6 HOH B 27 627 88 HOH HOH . J 6 HOH B 28 628 89 HOH HOH . J 6 HOH B 29 629 90 HOH HOH . J 6 HOH B 30 630 91 HOH HOH . J 6 HOH B 31 631 92 HOH HOH . J 6 HOH B 32 632 93 HOH HOH . J 6 HOH B 33 633 94 HOH HOH . J 6 HOH B 34 634 95 HOH HOH . J 6 HOH B 35 635 96 HOH HOH . J 6 HOH B 36 636 97 HOH HOH . J 6 HOH B 37 637 99 HOH HOH . J 6 HOH B 38 638 100 HOH HOH . J 6 HOH B 39 639 101 HOH HOH . J 6 HOH B 40 640 102 HOH HOH . J 6 HOH B 41 641 103 HOH HOH . J 6 HOH B 42 642 105 HOH HOH . J 6 HOH B 43 643 106 HOH HOH . J 6 HOH B 44 644 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 26.317 -8.854 -2.076 1 26.97 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . C 2 25.467 -9.884 -2.766 1 28.15 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . C 2 27.807 -8.841 -2.345 1 28.71 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . C 2 25.663 -7.418 -2.347 1 27.04 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . C 2 24.231 -7.304 -2.416 1 28.09 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . C 2 23.771 -5.856 -2.31 1 27.88 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . C 2 24.219 -5.353 -1.058 1 28.62 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . C 2 24.378 -4.959 -3.388 1 28.24 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . C 2 23.414 -4.001 -3.814 1 28.81 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . C 2 25.509 -4.217 -2.706 1 29.17 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . C 2 25.78 -2.906 -3.23 1 29.48 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . C 2 24.982 -4.159 -1.283 1 29.24 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . C 2 26.089 -4.042 -0.319 1 28.49 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . C 2 26.936 -5.015 0.069 1 28.4 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . C 2 27.828 -4.543 0.979 1 27.81 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . C 2 27.539 -3.237 1.172 1 28.17 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . C 2 28.078 -2.137 1.993 1 28.39 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . C 2 29.136 -2.36 2.82 1 30.01 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . C 2 27.484 -0.923 1.903 1 27.92 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . C 2 26.428 -0.698 1.098 1 28.54 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . C 2 25.878 -1.648 0.314 1 28.39 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . C 2 26.389 -2.91 0.313 1 28.77 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . C 2 18.248 -13.583 1.836 1 26.23 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . C 2 17.273 -13.466 2.779 1 25.99 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . C 2 16.767 -12.324 2.974 1 24.82 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . C 2 16.852 -14.544 3.485 1 25.84 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . C 2 17.365 -15.778 3.297 1 26.43 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . C 2 16.976 -16.754 3.973 1 27.75 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . C 2 18.428 -15.971 2.28 1 26.24 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . C 2 19.003 -17.174 2.035 1 26.53 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . C 2 19.971 -17.302 1.1 1 25.84 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . C 2 20.531 -18.555 0.876 1 26.31 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . C 2 21.534 -18.713 -0.09 1 26.16 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . C 2 22.148 -20.066 -0.327 1 25.19 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . C 2 22.001 -17.538 -0.874 1 25.81 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . C 2 23.083 -17.724 -1.91 1 26.83 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . C 2 21.446 -16.275 -0.644 1 25.27 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . C 2 20.441 -16.112 0.312 1 25.68 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . C 2 19.847 -14.85 0.562 1 25.54 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . C 2 18.843 -14.761 1.541 1 25.59 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . C 2 20.243 -13.629 -0.146 1 25.8 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . C 2 21.322 -12.884 0.654 1 26.44 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . C 2 21.034 -12.863 2.06 1 27.09 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . C 2 21.465 -11.451 0.181 1 25.84 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . C 2 21.725 -11.475 -1.214 1 25.63 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . C 2 22.587 -10.704 0.887 1 26.22 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . C 2 22.411 -9.324 0.571 1 27.76 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . C 2 23.977 -11.156 0.438 1 26.38 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . C 2 25.005 -10.442 1.124 1 26.02 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . C 2 26.448 -10.18 0.447 1 25.64 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . C 2 27.4 -9.672 1.502 1 24.9 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . C 2 26.814 -11.389 -0.373 1 24.73 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . C 2 26.079 -8.931 -0.491 1 26.45 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #