data_4P8T # _model_server_result.job_id ItfH84jcoXxcvjw7TE5XVQ _model_server_result.datetime_utc '2024-10-19 16:35:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 4P8T # _exptl.entry_id 4P8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.84 _cell.angle_gamma 90 _cell.entry_id 4P8T _cell.length_a 77.231 _cell.length_b 83.039 _cell.length_c 80.729 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8T _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 115 n n PA O2A FAD sing 116 n n PA O5B FAD sing 117 n n PA O3P FAD sing 118 n n O2A HOA2 FAD sing 119 n n O5B C5B FAD sing 120 n n C5B C4B FAD sing 121 n n C5B H51A FAD sing 122 n n C5B H52A FAD sing 123 n n C4B O4B FAD sing 124 n n C4B C3B FAD sing 125 n n C4B H4B FAD sing 126 n n O4B C1B FAD sing 127 n n C3B O3B FAD sing 128 n n C3B C2B FAD sing 129 n n C3B H3B FAD sing 130 n n O3B HO3A FAD sing 131 n n C2B O2B FAD sing 132 n n C2B C1B FAD sing 133 n n C2B H2B FAD sing 134 n n O2B HO2A FAD sing 135 n n C1B N9A FAD sing 136 n n C1B H1B FAD sing 137 n n N9A C8A FAD sing 138 n y N9A C4A FAD sing 139 n y C8A N7A FAD doub 140 n y C8A H8A FAD sing 141 n n N7A C5A FAD sing 142 n y C5A C6A FAD sing 143 n y C5A C4A FAD doub 144 n y C6A N6A FAD sing 145 n n C6A N1A FAD doub 146 n y N6A H61A FAD sing 147 n n N6A H62A FAD sing 148 n n N1A C2A FAD sing 149 n y C2A N3A FAD doub 150 n y C2A H2A FAD sing 151 n n N3A C4A FAD sing 152 n y N1 C2 FAD sing 153 n n N1 C10 FAD doub 154 n n C2 O2 FAD doub 155 n n C2 N3 FAD sing 156 n n N3 C4 FAD sing 157 n n N3 HN3 FAD sing 158 n n C4 O4 FAD doub 159 n n C4 C4X FAD sing 160 n n C4X N5 FAD doub 161 n n C4X C10 FAD sing 162 n n N5 C5X FAD sing 163 n n C5X C6 FAD doub 164 n y C5X C9A FAD sing 165 n y C6 C7 FAD sing 166 n y C6 H6 FAD sing 167 n n C7 C7M FAD sing 168 n n C7 C8 FAD doub 169 n y C7M HM71 FAD sing 170 n n C7M HM72 FAD sing 171 n n C7M HM73 FAD sing 172 n n C8 C8M FAD sing 173 n n C8 C9 FAD sing 174 n y C8M HM81 FAD sing 175 n n C8M HM82 FAD sing 176 n n C8M HM83 FAD sing 177 n n C9 C9A FAD doub 178 n y C9 H9 FAD sing 179 n n C9A N10 FAD sing 180 n n N10 C10 FAD sing 181 n n N10 C1' FAD sing 182 n n C1' C2' FAD sing 183 n n C1' "H1'1" FAD sing 184 n n C1' "H1'2" FAD sing 185 n n C2' O2' FAD sing 186 n n C2' C3' FAD sing 187 n n C2' H2' FAD sing 188 n n O2' HO2' FAD sing 189 n n C3' O3' FAD sing 190 n n C3' C4' FAD sing 191 n n C3' H3' FAD sing 192 n n O3' HO3' FAD sing 193 n n C4' O4' FAD sing 194 n n C4' C5' FAD sing 195 n n C4' H4' FAD sing 196 n n O4' HO4' FAD sing 197 n n C5' O5' FAD sing 198 n n C5' "H5'1" FAD sing 199 n n C5' "H5'2" FAD sing 200 n n O5' P FAD sing 201 n n P O1P FAD doub 202 n n P O2P FAD sing 203 n n P O3P FAD sing 204 n n O2P HOP2 FAD sing 205 n n # _atom_sites.entry_id 4P8T _atom_sites.fract_transf_matrix[1][1] 0.012948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002951 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 R26 A 1 502 550 R26 R26 . E 4 IMD A 1 503 560 IMD IMD . F 5 2J3 A 1 504 570 2J3 23B . G 2 FAD B 1 501 501 FAD FAD . H 3 R26 B 1 502 550 R26 R26 . I 6 HOH A 1 601 76 HOH HOH . I 6 HOH A 2 602 98 HOH HOH . I 6 HOH A 3 603 15 HOH HOH . I 6 HOH A 4 604 74 HOH HOH . I 6 HOH A 5 605 30 HOH HOH . I 6 HOH A 6 606 8 HOH HOH . I 6 HOH A 7 607 18 HOH HOH . I 6 HOH A 8 608 25 HOH HOH . I 6 HOH A 9 609 10 HOH HOH . I 6 HOH A 10 610 2 HOH HOH . I 6 HOH A 11 611 1 HOH HOH . I 6 HOH A 12 612 3 HOH HOH . I 6 HOH A 13 613 4 HOH HOH . I 6 HOH A 14 614 9 HOH HOH . I 6 HOH A 15 615 14 HOH HOH . I 6 HOH A 16 616 16 HOH HOH . I 6 HOH A 17 617 17 HOH HOH . I 6 HOH A 18 618 19 HOH HOH . I 6 HOH A 19 619 21 HOH HOH . I 6 HOH A 20 620 22 HOH HOH . I 6 HOH A 21 621 26 HOH HOH . I 6 HOH A 22 622 28 HOH HOH . I 6 HOH A 23 623 29 HOH HOH . I 6 HOH A 24 624 32 HOH HOH . I 6 HOH A 25 625 33 HOH HOH . I 6 HOH A 26 626 35 HOH HOH . I 6 HOH A 27 627 39 HOH HOH . I 6 HOH A 28 628 41 HOH HOH . I 6 HOH A 29 629 42 HOH HOH . I 6 HOH A 30 630 43 HOH HOH . I 6 HOH A 31 631 44 HOH HOH . I 6 HOH A 32 632 45 HOH HOH . I 6 HOH A 33 633 46 HOH HOH . I 6 HOH A 34 634 47 HOH HOH . I 6 HOH A 35 635 48 HOH HOH . I 6 HOH A 36 636 49 HOH HOH . I 6 HOH A 37 637 50 HOH HOH . I 6 HOH A 38 638 51 HOH HOH . I 6 HOH A 39 639 52 HOH HOH . I 6 HOH A 40 640 53 HOH HOH . I 6 HOH A 41 641 54 HOH HOH . I 6 HOH A 42 642 55 HOH HOH . I 6 HOH A 43 643 56 HOH HOH . I 6 HOH A 44 644 57 HOH HOH . I 6 HOH A 45 645 59 HOH HOH . I 6 HOH A 46 646 60 HOH HOH . I 6 HOH A 47 647 61 HOH HOH . I 6 HOH A 48 648 62 HOH HOH . I 6 HOH A 49 649 63 HOH HOH . I 6 HOH A 50 650 64 HOH HOH . I 6 HOH A 51 651 65 HOH HOH . I 6 HOH A 52 652 66 HOH HOH . I 6 HOH A 53 653 67 HOH HOH . I 6 HOH A 54 654 68 HOH HOH . I 6 HOH A 55 655 69 HOH HOH . I 6 HOH A 56 656 70 HOH HOH . I 6 HOH A 57 657 72 HOH HOH . I 6 HOH A 58 658 73 HOH HOH . I 6 HOH A 59 659 75 HOH HOH . I 6 HOH A 60 660 77 HOH HOH . J 6 HOH B 1 601 24 HOH HOH . J 6 HOH B 2 602 31 HOH HOH . J 6 HOH B 3 603 5 HOH HOH . J 6 HOH B 4 604 6 HOH HOH . J 6 HOH B 5 605 7 HOH HOH . J 6 HOH B 6 606 11 HOH HOH . J 6 HOH B 7 607 12 HOH HOH . J 6 HOH B 8 608 13 HOH HOH . J 6 HOH B 9 609 20 HOH HOH . J 6 HOH B 10 610 23 HOH HOH . J 6 HOH B 11 611 27 HOH HOH . J 6 HOH B 12 612 34 HOH HOH . J 6 HOH B 13 613 36 HOH HOH . J 6 HOH B 14 614 37 HOH HOH . J 6 HOH B 15 615 38 HOH HOH . J 6 HOH B 16 616 40 HOH HOH . J 6 HOH B 17 617 78 HOH HOH . J 6 HOH B 18 618 79 HOH HOH . J 6 HOH B 19 619 80 HOH HOH . J 6 HOH B 20 620 81 HOH HOH . J 6 HOH B 21 621 82 HOH HOH . J 6 HOH B 22 622 83 HOH HOH . J 6 HOH B 23 623 84 HOH HOH . J 6 HOH B 24 624 85 HOH HOH . J 6 HOH B 25 625 86 HOH HOH . J 6 HOH B 26 626 87 HOH HOH . J 6 HOH B 27 627 88 HOH HOH . J 6 HOH B 28 628 89 HOH HOH . J 6 HOH B 29 629 90 HOH HOH . J 6 HOH B 30 630 91 HOH HOH . J 6 HOH B 31 631 92 HOH HOH . J 6 HOH B 32 632 93 HOH HOH . J 6 HOH B 33 633 94 HOH HOH . J 6 HOH B 34 634 95 HOH HOH . J 6 HOH B 35 635 96 HOH HOH . J 6 HOH B 36 636 97 HOH HOH . J 6 HOH B 37 637 99 HOH HOH . J 6 HOH B 38 638 100 HOH HOH . J 6 HOH B 39 639 101 HOH HOH . J 6 HOH B 40 640 102 HOH HOH . J 6 HOH B 41 641 103 HOH HOH . J 6 HOH B 42 642 105 HOH HOH . J 6 HOH B 43 643 106 HOH HOH . J 6 HOH B 44 644 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 42.207 -21.263 43.394 1 30.58 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . G 2 43.284 -22.326 43.448 1 28.75 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . G 2 40.757 -21.645 43.518 1 30.82 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . G 2 42.5 -20.121 44.479 1 30.06 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . G 2 43.849 -19.786 44.803 1 31.15 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . G 2 43.947 -18.405 45.432 1 30.62 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . G 2 43.284 -17.433 44.628 1 31.01 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . G 2 43.311 -18.35 46.812 1 31.11 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . G 2 44.173 -17.539 47.617 1 30.96 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . G 2 41.99 -17.634 46.597 1 31.86 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . G 2 41.585 -16.874 47.738 1 33.22 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . G 2 42.339 -16.709 45.438 1 31.54 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . G 2 41.141 -16.29 44.673 1 31.13 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . G 2 40.497 -16.999 43.721 1 30.89 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . G 2 39.435 -16.308 43.226 1 31.03 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . G 2 39.387 -15.132 43.873 1 30.86 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . G 2 38.526 -13.934 43.85 1 31.4 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . G 2 37.471 -13.853 43.008 1 33.15 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . G 2 38.817 -12.916 44.696 1 32.48 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . G 2 39.861 -12.972 45.555 1 31.67 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . G 2 40.69 -14.032 45.627 1 31.84 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . G 2 40.513 -15.121 44.827 1 31.95 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . G 2 50.94 -20.982 38.34 1 28.83 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . G 2 51.799 -20.145 37.724 1 28.56 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . G 2 52.004 -19.032 38.263 1 26.92 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . G 2 52.424 -20.488 36.575 1 29.11 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . G 2 52.226 -21.676 35.973 1 30.32 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . G 2 52.801 -21.975 34.904 1 31.63 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . G 2 51.287 -22.644 36.591 1 30.24 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . G 2 51.019 -23.866 36.056 1 30.15 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . G 2 50.142 -24.711 36.671 1 29.27 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . G 2 49.885 -25.954 36.106 1 28.72 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . G 2 49.019 -26.858 36.704 1 28.07 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . G 2 48.774 -28.192 36.035 1 26.5 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . G 2 48.33 -26.474 37.975 1 28.83 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . G 2 47.361 -27.422 38.646 1 28.49 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . G 2 48.576 -25.223 38.542 1 28.46 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . G 2 49.459 -24.324 37.945 1 28.49 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . G 2 49.739 -23.055 38.511 1 28.66 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . G 2 50.645 -22.203 37.85 1 29.22 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . G 2 49.123 -22.578 39.748 1 28.75 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . G 2 47.898 -21.724 39.415 1 30.03 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . G 2 48.176 -20.811 38.346 1 30.37 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . G 2 47.445 -20.901 40.606 1 29.21 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . G 2 47.377 -21.739 41.762 1 31 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . G 2 46.094 -20.258 40.347 1 28.82 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . G 2 45.91 -19.238 41.332 1 30.1 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . G 2 44.949 -21.263 40.399 1 29.1 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . G 2 43.755 -20.631 39.954 1 29.57 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . G 2 42.315 -20.999 40.559 1 29.55 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . G 2 41.289 -20.209 39.791 1 31.14 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . G 2 42.169 -22.5 40.658 1 29.65 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . G 2 42.401 -20.381 42.043 1 31.01 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 600 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #