data_4P8T # _model_server_result.job_id LyFhu2zTeOHiVusSaUnCew _model_server_result.datetime_utc '2024-11-29 12:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 4P8T # _exptl.entry_id 4P8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.253 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.84 _cell.angle_gamma 90 _cell.entry_id 4P8T _cell.length_a 77.231 _cell.length_b 83.039 _cell.length_c 80.729 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8T _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H20 O4' _chem_comp.formula_weight 192.253 _chem_comp.id 2J3 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 2J3 sing 1 n n C14 C7 2J3 sing 2 n n C16 C3 2J3 sing 3 n n C3 C4 2J3 sing 4 n n C4 O2 2J3 sing 5 n n C7 C8 2J3 sing 6 n n C7 O3 2J3 sing 7 n n C6 O3 2J3 sing 8 n n C6 C5 2J3 sing 9 n n C8 O4 2J3 sing 10 n n O2 C5 2J3 sing 11 n n C5 C15 2J3 sing 12 n n O1 H1 2J3 sing 13 n n C3 H2 2J3 sing 14 n n C4 H3 2J3 sing 15 n n C4 H4 2J3 sing 16 n n O4 H5 2J3 sing 17 n n C5 H6 2J3 sing 18 n n C16 H7 2J3 sing 19 n n C16 H8 2J3 sing 20 n n C16 H9 2J3 sing 21 n n C15 H10 2J3 sing 22 n n C15 H11 2J3 sing 23 n n C15 H12 2J3 sing 24 n n C6 H13 2J3 sing 25 n n C6 H14 2J3 sing 26 n n C7 H15 2J3 sing 27 n n C14 H16 2J3 sing 28 n n C14 H17 2J3 sing 29 n n C14 H18 2J3 sing 30 n n C8 H19 2J3 sing 31 n n C8 H20 2J3 sing 32 n n # _atom_sites.entry_id 4P8T _atom_sites.fract_transf_matrix[1][1] 0.012948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002951 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 R26 A 1 502 550 R26 R26 . E 4 IMD A 1 503 560 IMD IMD . F 5 2J3 A 1 504 570 2J3 23B . G 2 FAD B 1 501 501 FAD FAD . H 3 R26 B 1 502 550 R26 R26 . I 6 HOH A 1 601 76 HOH HOH . I 6 HOH A 2 602 98 HOH HOH . I 6 HOH A 3 603 15 HOH HOH . I 6 HOH A 4 604 74 HOH HOH . I 6 HOH A 5 605 30 HOH HOH . I 6 HOH A 6 606 8 HOH HOH . I 6 HOH A 7 607 18 HOH HOH . I 6 HOH A 8 608 25 HOH HOH . I 6 HOH A 9 609 10 HOH HOH . I 6 HOH A 10 610 2 HOH HOH . I 6 HOH A 11 611 1 HOH HOH . I 6 HOH A 12 612 3 HOH HOH . I 6 HOH A 13 613 4 HOH HOH . I 6 HOH A 14 614 9 HOH HOH . I 6 HOH A 15 615 14 HOH HOH . I 6 HOH A 16 616 16 HOH HOH . I 6 HOH A 17 617 17 HOH HOH . I 6 HOH A 18 618 19 HOH HOH . I 6 HOH A 19 619 21 HOH HOH . I 6 HOH A 20 620 22 HOH HOH . I 6 HOH A 21 621 26 HOH HOH . I 6 HOH A 22 622 28 HOH HOH . I 6 HOH A 23 623 29 HOH HOH . I 6 HOH A 24 624 32 HOH HOH . I 6 HOH A 25 625 33 HOH HOH . I 6 HOH A 26 626 35 HOH HOH . I 6 HOH A 27 627 39 HOH HOH . I 6 HOH A 28 628 41 HOH HOH . I 6 HOH A 29 629 42 HOH HOH . I 6 HOH A 30 630 43 HOH HOH . I 6 HOH A 31 631 44 HOH HOH . I 6 HOH A 32 632 45 HOH HOH . I 6 HOH A 33 633 46 HOH HOH . I 6 HOH A 34 634 47 HOH HOH . I 6 HOH A 35 635 48 HOH HOH . I 6 HOH A 36 636 49 HOH HOH . I 6 HOH A 37 637 50 HOH HOH . I 6 HOH A 38 638 51 HOH HOH . I 6 HOH A 39 639 52 HOH HOH . I 6 HOH A 40 640 53 HOH HOH . I 6 HOH A 41 641 54 HOH HOH . I 6 HOH A 42 642 55 HOH HOH . I 6 HOH A 43 643 56 HOH HOH . I 6 HOH A 44 644 57 HOH HOH . I 6 HOH A 45 645 59 HOH HOH . I 6 HOH A 46 646 60 HOH HOH . I 6 HOH A 47 647 61 HOH HOH . I 6 HOH A 48 648 62 HOH HOH . I 6 HOH A 49 649 63 HOH HOH . I 6 HOH A 50 650 64 HOH HOH . I 6 HOH A 51 651 65 HOH HOH . I 6 HOH A 52 652 66 HOH HOH . I 6 HOH A 53 653 67 HOH HOH . I 6 HOH A 54 654 68 HOH HOH . I 6 HOH A 55 655 69 HOH HOH . I 6 HOH A 56 656 70 HOH HOH . I 6 HOH A 57 657 72 HOH HOH . I 6 HOH A 58 658 73 HOH HOH . I 6 HOH A 59 659 75 HOH HOH . I 6 HOH A 60 660 77 HOH HOH . J 6 HOH B 1 601 24 HOH HOH . J 6 HOH B 2 602 31 HOH HOH . J 6 HOH B 3 603 5 HOH HOH . J 6 HOH B 4 604 6 HOH HOH . J 6 HOH B 5 605 7 HOH HOH . J 6 HOH B 6 606 11 HOH HOH . J 6 HOH B 7 607 12 HOH HOH . J 6 HOH B 8 608 13 HOH HOH . J 6 HOH B 9 609 20 HOH HOH . J 6 HOH B 10 610 23 HOH HOH . J 6 HOH B 11 611 27 HOH HOH . J 6 HOH B 12 612 34 HOH HOH . J 6 HOH B 13 613 36 HOH HOH . J 6 HOH B 14 614 37 HOH HOH . J 6 HOH B 15 615 38 HOH HOH . J 6 HOH B 16 616 40 HOH HOH . J 6 HOH B 17 617 78 HOH HOH . J 6 HOH B 18 618 79 HOH HOH . J 6 HOH B 19 619 80 HOH HOH . J 6 HOH B 20 620 81 HOH HOH . J 6 HOH B 21 621 82 HOH HOH . J 6 HOH B 22 622 83 HOH HOH . J 6 HOH B 23 623 84 HOH HOH . J 6 HOH B 24 624 85 HOH HOH . J 6 HOH B 25 625 86 HOH HOH . J 6 HOH B 26 626 87 HOH HOH . J 6 HOH B 27 627 88 HOH HOH . J 6 HOH B 28 628 89 HOH HOH . J 6 HOH B 29 629 90 HOH HOH . J 6 HOH B 30 630 91 HOH HOH . J 6 HOH B 31 631 92 HOH HOH . J 6 HOH B 32 632 93 HOH HOH . J 6 HOH B 33 633 94 HOH HOH . J 6 HOH B 34 634 95 HOH HOH . J 6 HOH B 35 635 96 HOH HOH . J 6 HOH B 36 636 97 HOH HOH . J 6 HOH B 37 637 99 HOH HOH . J 6 HOH B 38 638 100 HOH HOH . J 6 HOH B 39 639 101 HOH HOH . J 6 HOH B 40 640 102 HOH HOH . J 6 HOH B 41 641 103 HOH HOH . J 6 HOH B 42 642 105 HOH HOH . J 6 HOH B 43 643 106 HOH HOH . J 6 HOH B 44 644 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2J3 . . . F 5 13.072 -29.103 5.354 1 68.92 ? O1 2J3 504 A 1 HETATM 2 O O2 2J3 . . . F 5 12.366 -26.264 6.105 1 69 ? O2 2J3 504 A 1 HETATM 3 C C3 2J3 . . . F 5 13.034 -28.586 6.695 1 68.51 ? C3 2J3 504 A 1 HETATM 4 O O3 2J3 . . . F 5 14.575 -24.132 5.801 1 67.93 ? O3 2J3 504 A 1 HETATM 5 C C4 2J3 . . . F 5 13.373 -27.089 6.71 1 69.47 ? C4 2J3 504 A 1 HETATM 6 O O4 2J3 . . . F 5 15.601 -21.565 8.17 1 64.51 ? O4 2J3 504 A 1 HETATM 7 C C5 2J3 . . . F 5 12.736 -25.49 4.938 1 69.75 ? C5 2J3 504 A 1 HETATM 8 C C16 2J3 . . . F 5 11.685 -28.891 7.341 1 64.38 ? C16 2J3 504 A 1 HETATM 9 C C15 2J3 . . . F 5 13.704 -26.197 3.976 1 68.73 ? C15 2J3 504 A 1 HETATM 10 C C6 2J3 . . . F 5 13.227 -24.091 5.325 1 67.27 ? C6 2J3 504 A 1 HETATM 11 C C7 2J3 . . . F 5 15.052 -22.85 6.217 1 64.87 ? C7 2J3 504 A 1 HETATM 12 C C14 2J3 . . . F 5 16.288 -22.448 5.412 1 62.42 ? C14 2J3 504 A 1 HETATM 13 C C8 2J3 . . . F 5 15.369 -22.9 7.706 1 64.08 ? C8 2J3 504 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #