data_4P8U # _model_server_result.job_id DRFW234pzLshtztjnsaqJQ _model_server_result.datetime_utc '2025-08-31 08:34:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4P8U # _exptl.entry_id 4P8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P8U _cell.length_a 70.764 _cell.length_b 70.764 _cell.length_c 141.179 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8U _symmetry.cell_setting . _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 289 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 353 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 372 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.965 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 4P8U _atom_sites.fract_transf_matrix[1][1] 0.014131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 410 SO4 SO4 . C 2 SO4 A 1 402 411 SO4 SO4 . D 3 PEG A 1 403 501 PEG PEG . E 4 HOH A 1 501 39 HOH HOH . E 4 HOH A 2 502 80 HOH HOH . E 4 HOH A 3 503 56 HOH HOH . E 4 HOH A 4 504 161 HOH HOH . E 4 HOH A 5 505 27 HOH HOH . E 4 HOH A 6 506 126 HOH HOH . E 4 HOH A 7 507 9 HOH HOH . E 4 HOH A 8 508 103 HOH HOH . E 4 HOH A 9 509 67 HOH HOH . E 4 HOH A 10 510 37 HOH HOH . E 4 HOH A 11 511 22 HOH HOH . E 4 HOH A 12 512 113 HOH HOH . E 4 HOH A 13 513 12 HOH HOH . E 4 HOH A 14 514 29 HOH HOH . E 4 HOH A 15 515 144 HOH HOH . E 4 HOH A 16 516 123 HOH HOH . E 4 HOH A 17 517 50 HOH HOH . E 4 HOH A 18 518 16 HOH HOH . E 4 HOH A 19 519 131 HOH HOH . E 4 HOH A 20 520 13 HOH HOH . E 4 HOH A 21 521 117 HOH HOH . E 4 HOH A 22 522 68 HOH HOH . E 4 HOH A 23 523 140 HOH HOH . E 4 HOH A 24 524 51 HOH HOH . E 4 HOH A 25 525 73 HOH HOH . E 4 HOH A 26 526 166 HOH HOH . E 4 HOH A 27 527 159 HOH HOH . E 4 HOH A 28 528 66 HOH HOH . E 4 HOH A 29 529 97 HOH HOH . E 4 HOH A 30 530 96 HOH HOH . E 4 HOH A 31 531 118 HOH HOH . E 4 HOH A 32 532 122 HOH HOH . E 4 HOH A 33 533 148 HOH HOH . E 4 HOH A 34 534 81 HOH HOH . E 4 HOH A 35 535 151 HOH HOH . E 4 HOH A 36 536 158 HOH HOH . E 4 HOH A 37 537 72 HOH HOH . E 4 HOH A 38 538 23 HOH HOH . E 4 HOH A 39 539 130 HOH HOH . E 4 HOH A 40 540 124 HOH HOH . E 4 HOH A 41 541 90 HOH HOH . E 4 HOH A 42 542 40 HOH HOH . E 4 HOH A 43 543 143 HOH HOH . E 4 HOH A 44 544 133 HOH HOH . E 4 HOH A 45 545 152 HOH HOH . E 4 HOH A 46 546 79 HOH HOH . E 4 HOH A 47 547 101 HOH HOH . E 4 HOH A 48 548 105 HOH HOH . E 4 HOH A 49 549 99 HOH HOH . E 4 HOH A 50 550 100 HOH HOH . E 4 HOH A 51 551 52 HOH HOH . E 4 HOH A 52 552 107 HOH HOH . E 4 HOH A 53 553 142 HOH HOH . E 4 HOH A 54 554 30 HOH HOH . E 4 HOH A 55 555 102 HOH HOH . E 4 HOH A 56 556 104 HOH HOH . E 4 HOH A 57 557 138 HOH HOH . E 4 HOH A 58 558 36 HOH HOH . E 4 HOH A 59 559 141 HOH HOH . E 4 HOH A 60 560 136 HOH HOH . E 4 HOH A 61 561 1 HOH HOH . E 4 HOH A 62 562 2 HOH HOH . E 4 HOH A 63 563 3 HOH HOH . E 4 HOH A 64 564 4 HOH HOH . E 4 HOH A 65 565 5 HOH HOH . E 4 HOH A 66 566 6 HOH HOH . E 4 HOH A 67 567 7 HOH HOH . E 4 HOH A 68 568 8 HOH HOH . E 4 HOH A 69 569 10 HOH HOH . E 4 HOH A 70 570 11 HOH HOH . E 4 HOH A 71 571 14 HOH HOH . E 4 HOH A 72 572 15 HOH HOH . E 4 HOH A 73 573 17 HOH HOH . E 4 HOH A 74 574 18 HOH HOH . E 4 HOH A 75 575 19 HOH HOH . E 4 HOH A 76 576 20 HOH HOH . E 4 HOH A 77 577 21 HOH HOH . E 4 HOH A 78 578 24 HOH HOH . E 4 HOH A 79 579 25 HOH HOH . E 4 HOH A 80 580 26 HOH HOH . E 4 HOH A 81 581 28 HOH HOH . E 4 HOH A 82 582 31 HOH HOH . E 4 HOH A 83 583 32 HOH HOH . E 4 HOH A 84 584 33 HOH HOH . E 4 HOH A 85 585 34 HOH HOH . E 4 HOH A 86 586 35 HOH HOH . E 4 HOH A 87 587 38 HOH HOH . E 4 HOH A 88 588 41 HOH HOH . E 4 HOH A 89 589 42 HOH HOH . E 4 HOH A 90 590 43 HOH HOH . E 4 HOH A 91 591 44 HOH HOH . E 4 HOH A 92 592 45 HOH HOH . E 4 HOH A 93 593 46 HOH HOH . E 4 HOH A 94 594 47 HOH HOH . E 4 HOH A 95 595 48 HOH HOH . E 4 HOH A 96 596 49 HOH HOH . E 4 HOH A 97 597 53 HOH HOH . E 4 HOH A 98 598 54 HOH HOH . E 4 HOH A 99 599 55 HOH HOH . E 4 HOH A 100 600 57 HOH HOH . E 4 HOH A 101 601 58 HOH HOH . E 4 HOH A 102 602 59 HOH HOH . E 4 HOH A 103 603 60 HOH HOH . E 4 HOH A 104 604 61 HOH HOH . E 4 HOH A 105 605 62 HOH HOH . E 4 HOH A 106 606 63 HOH HOH . E 4 HOH A 107 607 64 HOH HOH . E 4 HOH A 108 608 65 HOH HOH . E 4 HOH A 109 609 69 HOH HOH . E 4 HOH A 110 610 70 HOH HOH . E 4 HOH A 111 611 71 HOH HOH . E 4 HOH A 112 612 74 HOH HOH . E 4 HOH A 113 613 75 HOH HOH . E 4 HOH A 114 614 76 HOH HOH . E 4 HOH A 115 615 77 HOH HOH . E 4 HOH A 116 616 78 HOH HOH . E 4 HOH A 117 617 82 HOH HOH . E 4 HOH A 118 618 83 HOH HOH . E 4 HOH A 119 619 84 HOH HOH . E 4 HOH A 120 620 85 HOH HOH . E 4 HOH A 121 621 86 HOH HOH . E 4 HOH A 122 622 87 HOH HOH . E 4 HOH A 123 623 88 HOH HOH . E 4 HOH A 124 624 89 HOH HOH . E 4 HOH A 125 625 91 HOH HOH . E 4 HOH A 126 626 92 HOH HOH . E 4 HOH A 127 627 93 HOH HOH . E 4 HOH A 128 628 94 HOH HOH . E 4 HOH A 129 629 95 HOH HOH . E 4 HOH A 130 630 98 HOH HOH . E 4 HOH A 131 631 106 HOH HOH . E 4 HOH A 132 632 108 HOH HOH . E 4 HOH A 133 633 109 HOH HOH . E 4 HOH A 134 634 110 HOH HOH . E 4 HOH A 135 635 111 HOH HOH . E 4 HOH A 136 636 112 HOH HOH . E 4 HOH A 137 637 114 HOH HOH . E 4 HOH A 138 638 115 HOH HOH . E 4 HOH A 139 639 116 HOH HOH . E 4 HOH A 140 640 119 HOH HOH . E 4 HOH A 141 641 120 HOH HOH . E 4 HOH A 142 642 121 HOH HOH . E 4 HOH A 143 643 125 HOH HOH . E 4 HOH A 144 644 127 HOH HOH . E 4 HOH A 145 645 128 HOH HOH . E 4 HOH A 146 646 129 HOH HOH . E 4 HOH A 147 647 132 HOH HOH . E 4 HOH A 148 648 134 HOH HOH . E 4 HOH A 149 649 135 HOH HOH . E 4 HOH A 150 650 137 HOH HOH . E 4 HOH A 151 651 139 HOH HOH . E 4 HOH A 152 652 145 HOH HOH . E 4 HOH A 153 653 146 HOH HOH . E 4 HOH A 154 654 147 HOH HOH . E 4 HOH A 155 655 149 HOH HOH . E 4 HOH A 156 656 150 HOH HOH . E 4 HOH A 157 657 153 HOH HOH . E 4 HOH A 158 658 154 HOH HOH . E 4 HOH A 159 659 155 HOH HOH . E 4 HOH A 160 660 156 HOH HOH . E 4 HOH A 161 661 157 HOH HOH . E 4 HOH A 162 662 160 HOH HOH . E 4 HOH A 163 663 162 HOH HOH . E 4 HOH A 164 664 163 HOH HOH . E 4 HOH A 165 665 164 HOH HOH . E 4 HOH A 166 666 165 HOH HOH . E 4 HOH A 167 667 167 HOH HOH . E 4 HOH A 168 668 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 -25.187 27.045 0.521 1 84.1 ? C1 PEG 403 A 1 HETATM 2 O O1 PEG . . . D 3 -24.308 26.854 -0.583 1 75.54 ? O1 PEG 403 A 1 HETATM 3 C C2 PEG . . . D 3 -24.818 28.311 1.278 1 86.74 ? C2 PEG 403 A 1 HETATM 4 O O2 PEG . . . D 3 -24.806 28.041 2.682 1 88.46 ? O2 PEG 403 A 1 HETATM 5 C C3 PEG . . . D 3 -24.092 29.014 3.443 1 88.73 ? C3 PEG 403 A 1 HETATM 6 C C4 PEG . . . D 3 -25.012 30.07 4.054 1 88.49 ? C4 PEG 403 A 1 HETATM 7 O O4 PEG . . . D 3 -24.394 31.375 4.068 1 85.9 ? O4 PEG 403 A 1 # _model_server_stats.io_time_ms 473 _model_server_stats.parse_time_ms 301 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 701 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #