data_4P9A # _model_server_result.job_id 7W-dLm17jAXf6enuTNL0Rg _model_server_result.datetime_utc '2024-11-24 08:21:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4P9A # _exptl.entry_id 4P9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P9A _cell.length_a 68.89 _cell.length_b 68.89 _cell.length_c 400.19 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P9A _symmetry.cell_setting . _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4P9A _atom_sites.fract_transf_matrix[1][1] 0.014516 _atom_sites.fract_transf_matrix[1][2] 0.008381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 801 1 GOL GOL . C 3 HOH A 1 901 87 HOH HOH . C 3 HOH A 2 902 74 HOH HOH . C 3 HOH A 3 903 84 HOH HOH . C 3 HOH A 4 904 23 HOH HOH . C 3 HOH A 5 905 72 HOH HOH . C 3 HOH A 6 906 38 HOH HOH . C 3 HOH A 7 907 36 HOH HOH . C 3 HOH A 8 908 32 HOH HOH . C 3 HOH A 9 909 37 HOH HOH . C 3 HOH A 10 910 34 HOH HOH . C 3 HOH A 11 911 82 HOH HOH . C 3 HOH A 12 912 70 HOH HOH . C 3 HOH A 13 913 24 HOH HOH . C 3 HOH A 14 914 58 HOH HOH . C 3 HOH A 15 915 59 HOH HOH . C 3 HOH A 16 916 39 HOH HOH . C 3 HOH A 17 917 33 HOH HOH . C 3 HOH A 18 918 62 HOH HOH . C 3 HOH A 19 919 88 HOH HOH . C 3 HOH A 20 920 25 HOH HOH . C 3 HOH A 21 921 64 HOH HOH . C 3 HOH A 22 922 91 HOH HOH . C 3 HOH A 23 923 1 HOH HOH . C 3 HOH A 24 924 2 HOH HOH . C 3 HOH A 25 925 3 HOH HOH . C 3 HOH A 26 926 4 HOH HOH . C 3 HOH A 27 927 5 HOH HOH . C 3 HOH A 28 928 6 HOH HOH . C 3 HOH A 29 929 7 HOH HOH . C 3 HOH A 30 930 8 HOH HOH . C 3 HOH A 31 931 9 HOH HOH . C 3 HOH A 32 932 10 HOH HOH . C 3 HOH A 33 933 11 HOH HOH . C 3 HOH A 34 934 12 HOH HOH . C 3 HOH A 35 935 13 HOH HOH . C 3 HOH A 36 936 14 HOH HOH . C 3 HOH A 37 937 15 HOH HOH . C 3 HOH A 38 938 16 HOH HOH . C 3 HOH A 39 939 17 HOH HOH . C 3 HOH A 40 940 18 HOH HOH . C 3 HOH A 41 941 19 HOH HOH . C 3 HOH A 42 942 20 HOH HOH . C 3 HOH A 43 943 21 HOH HOH . C 3 HOH A 44 944 22 HOH HOH . C 3 HOH A 45 945 26 HOH HOH . C 3 HOH A 46 946 27 HOH HOH . C 3 HOH A 47 947 28 HOH HOH . C 3 HOH A 48 948 29 HOH HOH . C 3 HOH A 49 949 30 HOH HOH . C 3 HOH A 50 950 31 HOH HOH . C 3 HOH A 51 951 35 HOH HOH . C 3 HOH A 52 952 40 HOH HOH . C 3 HOH A 53 953 41 HOH HOH . C 3 HOH A 54 954 42 HOH HOH . C 3 HOH A 55 955 43 HOH HOH . C 3 HOH A 56 956 44 HOH HOH . C 3 HOH A 57 957 45 HOH HOH . C 3 HOH A 58 958 46 HOH HOH . C 3 HOH A 59 959 47 HOH HOH . C 3 HOH A 60 960 48 HOH HOH . C 3 HOH A 61 961 49 HOH HOH . C 3 HOH A 62 962 50 HOH HOH . C 3 HOH A 63 963 51 HOH HOH . C 3 HOH A 64 964 52 HOH HOH . C 3 HOH A 65 965 53 HOH HOH . C 3 HOH A 66 966 54 HOH HOH . C 3 HOH A 67 967 55 HOH HOH . C 3 HOH A 68 968 56 HOH HOH . C 3 HOH A 69 969 57 HOH HOH . C 3 HOH A 70 970 60 HOH HOH . C 3 HOH A 71 971 61 HOH HOH . C 3 HOH A 72 972 63 HOH HOH . C 3 HOH A 73 973 65 HOH HOH . C 3 HOH A 74 974 66 HOH HOH . C 3 HOH A 75 975 67 HOH HOH . C 3 HOH A 76 976 68 HOH HOH . C 3 HOH A 77 977 69 HOH HOH . C 3 HOH A 78 978 71 HOH HOH . C 3 HOH A 79 979 73 HOH HOH . C 3 HOH A 80 980 75 HOH HOH . C 3 HOH A 81 981 76 HOH HOH . C 3 HOH A 82 982 77 HOH HOH . C 3 HOH A 83 983 78 HOH HOH . C 3 HOH A 84 984 79 HOH HOH . C 3 HOH A 85 985 80 HOH HOH . C 3 HOH A 86 986 81 HOH HOH . C 3 HOH A 87 987 83 HOH HOH . C 3 HOH A 88 988 85 HOH HOH . C 3 HOH A 89 989 86 HOH HOH . C 3 HOH A 90 990 89 HOH HOH . C 3 HOH A 91 991 90 HOH HOH . C 3 HOH A 92 992 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 13.222 22.176 9.686 1 91.72 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . B 2 14.16 21.208 9.262 1 91.69 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . B 2 13.791 23.049 10.804 1 91.14 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . B 2 13.107 22.757 11.998 1 93.39 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . B 2 13.557 24.526 10.504 1 90.25 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . B 2 13.894 24.864 9.172 1 91.26 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #