data_4P9G # _model_server_result.job_id XA8iwN-2A0TS8_JScF4CPg _model_server_result.datetime_utc '2024-11-05 01:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4P9G # _exptl.entry_id 4P9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P9G _cell.length_a 82.557 _cell.length_b 82.557 _cell.length_c 114.008 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 41.2785 71.496459 19.001333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 97 A HIS 76 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc2 A NE2 HIS 99 A HIS 78 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 A NE2 HIS 135 A HIS 114 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 B FE FE . A FE 401 1_555 C O1 CO3 . A CO3 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 B FE FE . A FE 401 1_555 C O2 CO3 . A CO3 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 132 n n C1 C2 GOL sing 133 n n C1 H11 GOL sing 134 n n C1 H12 GOL sing 135 n n O1 HO1 GOL sing 136 n n C2 O2 GOL sing 137 n n C2 C3 GOL sing 138 n n C2 H2 GOL sing 139 n n O2 HO2 GOL sing 140 n n C3 O3 GOL sing 141 n n C3 H31 GOL sing 142 n n C3 H32 GOL sing 143 n n O3 HO3 GOL sing 144 n n # _atom_sites.entry_id 4P9G _atom_sites.fract_transf_matrix[1][1] 0.012113 _atom_sites.fract_transf_matrix[1][2] 0.006993 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 401 FE FE . C 3 CO3 A 1 402 402 CO3 CO3 . D 4 GOL A 1 403 403 GOL GOL . E 5 HOH A 1 501 507 HOH HOH . E 5 HOH A 2 502 548 HOH HOH . E 5 HOH A 3 503 555 HOH HOH . E 5 HOH A 4 504 618 HOH HOH . E 5 HOH A 5 505 581 HOH HOH . E 5 HOH A 6 506 528 HOH HOH . E 5 HOH A 7 507 537 HOH HOH . E 5 HOH A 8 508 511 HOH HOH . E 5 HOH A 9 509 516 HOH HOH . E 5 HOH A 10 510 617 HOH HOH . E 5 HOH A 11 511 556 HOH HOH . E 5 HOH A 12 512 566 HOH HOH . E 5 HOH A 13 513 509 HOH HOH . E 5 HOH A 14 514 569 HOH HOH . E 5 HOH A 15 515 609 HOH HOH . E 5 HOH A 16 516 515 HOH HOH . E 5 HOH A 17 517 564 HOH HOH . E 5 HOH A 18 518 575 HOH HOH . E 5 HOH A 19 519 570 HOH HOH . E 5 HOH A 20 520 539 HOH HOH . E 5 HOH A 21 521 540 HOH HOH . E 5 HOH A 22 522 533 HOH HOH . E 5 HOH A 23 523 536 HOH HOH . E 5 HOH A 24 524 565 HOH HOH . E 5 HOH A 25 525 529 HOH HOH . E 5 HOH A 26 526 549 HOH HOH . E 5 HOH A 27 527 523 HOH HOH . E 5 HOH A 28 528 527 HOH HOH . E 5 HOH A 29 529 517 HOH HOH . E 5 HOH A 30 530 522 HOH HOH . E 5 HOH A 31 531 602 HOH HOH . E 5 HOH A 32 532 601 HOH HOH . E 5 HOH A 33 533 584 HOH HOH . E 5 HOH A 34 534 599 HOH HOH . E 5 HOH A 35 535 582 HOH HOH . E 5 HOH A 36 536 616 HOH HOH . E 5 HOH A 37 537 535 HOH HOH . E 5 HOH A 38 538 567 HOH HOH . E 5 HOH A 39 539 606 HOH HOH . E 5 HOH A 40 540 553 HOH HOH . E 5 HOH A 41 541 568 HOH HOH . E 5 HOH A 42 542 603 HOH HOH . E 5 HOH A 43 543 589 HOH HOH . E 5 HOH A 44 544 598 HOH HOH . E 5 HOH A 45 545 611 HOH HOH . E 5 HOH A 46 546 597 HOH HOH . E 5 HOH A 47 547 501 HOH HOH . E 5 HOH A 48 548 502 HOH HOH . E 5 HOH A 49 549 503 HOH HOH . E 5 HOH A 50 550 504 HOH HOH . E 5 HOH A 51 551 505 HOH HOH . E 5 HOH A 52 552 506 HOH HOH . E 5 HOH A 53 553 508 HOH HOH . E 5 HOH A 54 554 510 HOH HOH . E 5 HOH A 55 555 512 HOH HOH . E 5 HOH A 56 556 513 HOH HOH . E 5 HOH A 57 557 514 HOH HOH . E 5 HOH A 58 558 518 HOH HOH . E 5 HOH A 59 559 519 HOH HOH . E 5 HOH A 60 560 520 HOH HOH . E 5 HOH A 61 561 521 HOH HOH . E 5 HOH A 62 562 524 HOH HOH . E 5 HOH A 63 563 525 HOH HOH . E 5 HOH A 64 564 526 HOH HOH . E 5 HOH A 65 565 530 HOH HOH . E 5 HOH A 66 566 531 HOH HOH . E 5 HOH A 67 567 532 HOH HOH . E 5 HOH A 68 568 534 HOH HOH . E 5 HOH A 69 569 538 HOH HOH . E 5 HOH A 70 570 541 HOH HOH . E 5 HOH A 71 571 542 HOH HOH . E 5 HOH A 72 572 543 HOH HOH . E 5 HOH A 73 573 544 HOH HOH . E 5 HOH A 74 574 545 HOH HOH . E 5 HOH A 75 575 546 HOH HOH . E 5 HOH A 76 576 547 HOH HOH . E 5 HOH A 77 577 550 HOH HOH . E 5 HOH A 78 578 551 HOH HOH . E 5 HOH A 79 579 552 HOH HOH . E 5 HOH A 80 580 554 HOH HOH . E 5 HOH A 81 581 557 HOH HOH . E 5 HOH A 82 582 558 HOH HOH . E 5 HOH A 83 583 559 HOH HOH . E 5 HOH A 84 584 560 HOH HOH . E 5 HOH A 85 585 561 HOH HOH . E 5 HOH A 86 586 562 HOH HOH . E 5 HOH A 87 587 563 HOH HOH . E 5 HOH A 88 588 571 HOH HOH . E 5 HOH A 89 589 572 HOH HOH . E 5 HOH A 90 590 573 HOH HOH . E 5 HOH A 91 591 574 HOH HOH . E 5 HOH A 92 592 576 HOH HOH . E 5 HOH A 93 593 577 HOH HOH . E 5 HOH A 94 594 578 HOH HOH . E 5 HOH A 95 595 579 HOH HOH . E 5 HOH A 96 596 580 HOH HOH . E 5 HOH A 97 597 583 HOH HOH . E 5 HOH A 98 598 585 HOH HOH . E 5 HOH A 99 599 586 HOH HOH . E 5 HOH A 100 600 587 HOH HOH . E 5 HOH A 101 601 588 HOH HOH . E 5 HOH A 102 602 590 HOH HOH . E 5 HOH A 103 603 591 HOH HOH . E 5 HOH A 104 604 592 HOH HOH . E 5 HOH A 105 605 593 HOH HOH . E 5 HOH A 106 606 594 HOH HOH . E 5 HOH A 107 607 595 HOH HOH . E 5 HOH A 108 608 596 HOH HOH . E 5 HOH A 109 609 600 HOH HOH . E 5 HOH A 110 610 604 HOH HOH . E 5 HOH A 111 611 605 HOH HOH . E 5 HOH A 112 612 607 HOH HOH . E 5 HOH A 113 613 608 HOH HOH . E 5 HOH A 114 614 610 HOH HOH . E 5 HOH A 115 615 612 HOH HOH . E 5 HOH A 116 616 613 HOH HOH . E 5 HOH A 117 617 614 HOH HOH . E 5 HOH A 118 618 615 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 21.721 20.702 3.637 1 50.76 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 21.969 22.068 3.235 1 43.25 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 21.795 20.463 5.172 1 45.63 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 22.18 21.574 5.977 1 46.35 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 20.471 20.22 5.81 1 41.89 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 20.975 19.31 6.781 1 45.42 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #