data_4P9M
#
_model_server_result.job_id            lRV436dke4ljY5TQi4QfdQ 
_model_server_result.datetime_utc      '2024-11-30 15:54:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    4P9M 
#
_exptl.entry_id    4P9M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4P9M 
_cell.length_a            66.482 
_cell.length_b            66.482 
_cell.length_c            219.034 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 99 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 159 H CYS 140 1_555 B SG CYS 215 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 B ND2 ASN 88 H ASN 82 1_555 C C1 NAG . H NAG 1000 1_555 B ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4P9M 
_atom_sites.fract_transf_matrix[1][1]    0.015042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004566 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG H 1 1000 1000 NAG NAG . 
D 4 HOH L 1 301 301 HOH HOH . 
D 4 HOH L 2 302 303 HOH HOH . 
D 4 HOH L 3 303 304 HOH HOH . 
D 4 HOH L 4 304 305 HOH HOH . 
D 4 HOH L 5 305 306 HOH HOH . 
D 4 HOH L 6 306 307 HOH HOH . 
D 4 HOH L 7 307 308 HOH HOH . 
D 4 HOH L 8 308 309 HOH HOH . 
D 4 HOH L 9 309 311 HOH HOH . 
D 4 HOH L 10 310 312 HOH HOH . 
D 4 HOH L 11 311 314 HOH HOH . 
D 4 HOH L 12 312 315 HOH HOH . 
D 4 HOH L 13 313 316 HOH HOH . 
D 4 HOH L 14 314 317 HOH HOH . 
D 4 HOH L 15 315 318 HOH HOH . 
D 4 HOH L 16 316 319 HOH HOH . 
D 4 HOH L 17 317 320 HOH HOH . 
D 4 HOH L 18 318 321 HOH HOH . 
D 4 HOH L 19 319 322 HOH HOH . 
D 4 HOH L 20 320 310 HOH HOH . 
D 4 HOH L 21 321 313 HOH HOH . 
D 4 HOH L 22 322 323 HOH HOH . 
D 4 HOH L 23 323 324 HOH HOH . 
D 4 HOH L 24 324 325 HOH HOH . 
D 4 HOH L 25 325 326 HOH HOH . 
D 4 HOH L 26 326 327 HOH HOH . 
D 4 HOH L 27 327 328 HOH HOH . 
D 4 HOH L 28 328 329 HOH HOH . 
D 4 HOH L 29 329 330 HOH HOH . 
D 4 HOH L 30 330 331 HOH HOH . 
D 4 HOH L 31 331 332 HOH HOH . 
D 4 HOH L 32 332 333 HOH HOH . 
D 4 HOH L 33 333 334 HOH HOH . 
D 4 HOH L 34 334 335 HOH HOH . 
D 4 HOH L 35 335 336 HOH HOH . 
D 4 HOH L 36 336 337 HOH HOH . 
D 4 HOH L 37 337 338 HOH HOH . 
D 4 HOH L 38 338 339 HOH HOH . 
D 4 HOH L 39 339 340 HOH HOH . 
D 4 HOH L 40 340 341 HOH HOH . 
D 4 HOH L 41 341 342 HOH HOH . 
D 4 HOH L 42 342 343 HOH HOH . 
D 4 HOH L 43 343 344 HOH HOH . 
D 4 HOH L 44 344 345 HOH HOH . 
D 4 HOH L 45 345 346 HOH HOH . 
D 4 HOH L 46 346 347 HOH HOH . 
D 4 HOH L 47 347 348 HOH HOH . 
D 4 HOH L 48 348 349 HOH HOH . 
D 4 HOH L 49 349 350 HOH HOH . 
D 4 HOH L 50 350 351 HOH HOH . 
D 4 HOH L 51 351 352 HOH HOH . 
D 4 HOH L 52 352 353 HOH HOH . 
D 4 HOH L 53 353 354 HOH HOH . 
D 4 HOH L 54 354 355 HOH HOH . 
D 4 HOH L 55 355 356 HOH HOH . 
D 4 HOH L 56 356 357 HOH HOH . 
D 4 HOH L 57 357 358 HOH HOH . 
D 4 HOH L 58 358 359 HOH HOH . 
D 4 HOH L 59 359 360 HOH HOH . 
D 4 HOH L 60 360 361 HOH HOH . 
D 4 HOH L 61 361 362 HOH HOH . 
D 4 HOH L 62 362 363 HOH HOH . 
D 4 HOH L 63 363 364 HOH HOH . 
D 4 HOH L 64 364 365 HOH HOH . 
D 4 HOH L 65 365 366 HOH HOH . 
D 4 HOH L 66 366 367 HOH HOH . 
D 4 HOH L 67 367 368 HOH HOH . 
D 4 HOH L 68 368 369 HOH HOH . 
D 4 HOH L 69 369 370 HOH HOH . 
D 4 HOH L 70 370 371 HOH HOH . 
D 4 HOH L 71 371 372 HOH HOH . 
D 4 HOH L 72 372 373 HOH HOH . 
D 4 HOH L 73 373 374 HOH HOH . 
D 4 HOH L 74 374 375 HOH HOH . 
D 4 HOH L 75 375 376 HOH HOH . 
D 4 HOH L 76 376 377 HOH HOH . 
D 4 HOH L 77 377 378 HOH HOH . 
D 4 HOH L 78 378 379 HOH HOH . 
D 4 HOH L 79 379 380 HOH HOH . 
D 4 HOH L 80 380 381 HOH HOH . 
D 4 HOH L 81 381 382 HOH HOH . 
D 4 HOH L 82 382 383 HOH HOH . 
D 4 HOH L 83 383 384 HOH HOH . 
D 4 HOH L 84 384 385 HOH HOH . 
D 4 HOH L 85 385 386 HOH HOH . 
D 4 HOH L 86 386 387 HOH HOH . 
D 4 HOH L 87 387 388 HOH HOH . 
D 4 HOH L 88 388 389 HOH HOH . 
D 4 HOH L 89 389 390 HOH HOH . 
D 4 HOH L 90 390 391 HOH HOH . 
D 4 HOH L 91 391 392 HOH HOH . 
D 4 HOH L 92 392 393 HOH HOH . 
D 4 HOH L 93 393 394 HOH HOH . 
D 4 HOH L 94 394 395 HOH HOH . 
D 4 HOH L 95 395 396 HOH HOH . 
E 4 HOH H 1 1101 1101 HOH HOH . 
E 4 HOH H 2 1102 1102 HOH HOH . 
E 4 HOH H 3 1103 1103 HOH HOH . 
E 4 HOH H 4 1104 1104 HOH HOH . 
E 4 HOH H 5 1105 1105 HOH HOH . 
E 4 HOH H 6 1106 1106 HOH HOH . 
E 4 HOH H 7 1107 1107 HOH HOH . 
E 4 HOH H 8 1108 1108 HOH HOH . 
E 4 HOH H 9 1109 1109 HOH HOH . 
E 4 HOH H 10 1110 1110 HOH HOH . 
E 4 HOH H 11 1111 1111 HOH HOH . 
E 4 HOH H 12 1112 1112 HOH HOH . 
E 4 HOH H 13 1113 1113 HOH HOH . 
E 4 HOH H 14 1114 1115 HOH HOH . 
E 4 HOH H 15 1115 1114 HOH HOH . 
E 4 HOH H 16 1116 1116 HOH HOH . 
E 4 HOH H 17 1117 1117 HOH HOH . 
E 4 HOH H 18 1118 1118 HOH HOH . 
E 4 HOH H 19 1119 1119 HOH HOH . 
E 4 HOH H 20 1120 1120 HOH HOH . 
E 4 HOH H 21 1121 1121 HOH HOH . 
E 4 HOH H 22 1122 1122 HOH HOH . 
E 4 HOH H 23 1123 1123 HOH HOH . 
E 4 HOH H 24 1124 1124 HOH HOH . 
E 4 HOH H 25 1125 1125 HOH HOH . 
E 4 HOH H 26 1126 1126 HOH HOH . 
E 4 HOH H 27 1127 1127 HOH HOH . 
E 4 HOH H 28 1128 1128 HOH HOH . 
E 4 HOH H 29 1129 1129 HOH HOH . 
E 4 HOH H 30 1130 1130 HOH HOH . 
E 4 HOH H 31 1131 1131 HOH HOH . 
E 4 HOH H 32 1132 1132 HOH HOH . 
E 4 HOH H 33 1133 1133 HOH HOH . 
E 4 HOH H 34 1134 1134 HOH HOH . 
E 4 HOH H 35 1135 1135 HOH HOH . 
E 4 HOH H 36 1136 1136 HOH HOH . 
E 4 HOH H 37 1137 1137 HOH HOH . 
E 4 HOH H 38 1138 1138 HOH HOH . 
E 4 HOH H 39 1139 1139 HOH HOH . 
E 4 HOH H 40 1140 1140 HOH HOH . 
E 4 HOH H 41 1141 1141 HOH HOH . 
E 4 HOH H 42 1142 1142 HOH HOH . 
E 4 HOH H 43 1143 1143 HOH HOH . 
E 4 HOH H 44 1144 1144 HOH HOH . 
E 4 HOH H 45 1145 1145 HOH HOH . 
E 4 HOH H 46 1146 1146 HOH HOH . 
E 4 HOH H 47 1147 1147 HOH HOH . 
E 4 HOH H 48 1148 1148 HOH HOH . 
E 4 HOH H 49 1149 1149 HOH HOH . 
E 4 HOH H 50 1150 1150 HOH HOH . 
E 4 HOH H 51 1151 1151 HOH HOH . 
E 4 HOH H 52 1152 1152 HOH HOH . 
E 4 HOH H 53 1153 1153 HOH HOH . 
E 4 HOH H 54 1154 1154 HOH HOH . 
E 4 HOH H 55 1155 1155 HOH HOH . 
E 4 HOH H 56 1156 1156 HOH HOH . 
E 4 HOH H 57 1157 1157 HOH HOH . 
E 4 HOH H 58 1158 1158 HOH HOH . 
E 4 HOH H 59 1159 1159 HOH HOH . 
E 4 HOH H 60 1160 1160 HOH HOH . 
E 4 HOH H 61 1161 1161 HOH HOH . 
E 4 HOH H 62 1162 1162 HOH HOH . 
E 4 HOH H 63 1163 1163 HOH HOH . 
E 4 HOH H 64 1164 1164 HOH HOH . 
E 4 HOH H 65 1165 1165 HOH HOH . 
E 4 HOH H 66 1166 1166 HOH HOH . 
E 4 HOH H 67 1167 1167 HOH HOH . 
E 4 HOH H 68 1168 1168 HOH HOH . 
E 4 HOH H 69 1169 1169 HOH HOH . 
E 4 HOH H 70 1170 1170 HOH HOH . 
E 4 HOH H 71 1171 1171 HOH HOH . 
E 4 HOH H 72 1172 1172 HOH HOH . 
E 4 HOH H 73 1173 1173 HOH HOH . 
E 4 HOH H 74 1174 1174 HOH HOH . 
E 4 HOH H 75 1175 1175 HOH HOH . 
E 4 HOH H 76 1176 1176 HOH HOH . 
E 4 HOH H 77 1177 1177 HOH HOH . 
E 4 HOH H 78 1178 1178 HOH HOH . 
E 4 HOH H 79 1179 1179 HOH HOH . 
E 4 HOH H 80 1180 1180 HOH HOH . 
E 4 HOH H 81 1181 1181 HOH HOH . 
E 4 HOH H 82 1182 1182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 46.773 73.948 25.116 0.8 60.83 ? C1 NAG 1000 H 1 
HETATM 2 C C2 NAG . . . C 3 47.608 73.826 26.41 0.8 62.8 ? C2 NAG 1000 H 1 
HETATM 3 C C3 NAG . . . C 3 48.356 75.141 26.674 0.8 65.58 ? C3 NAG 1000 H 1 
HETATM 4 C C4 NAG . . . C 3 48.939 75.74 25.392 0.8 62.93 ? C4 NAG 1000 H 1 
HETATM 5 C C5 NAG . . . C 3 47.911 75.635 24.268 0.8 66.94 ? C5 NAG 1000 H 1 
HETATM 6 C C6 NAG . . . C 3 48.325 76.143 22.911 0.8 69.82 ? C6 NAG 1000 H 1 
HETATM 7 C C7 NAG . . . C 3 46.991 72.379 28.297 0.8 62.61 ? C7 NAG 1000 H 1 
HETATM 8 C C8 NAG . . . C 3 46.064 72.182 29.466 0.8 60.84 ? C8 NAG 1000 H 1 
HETATM 9 N N2 NAG . . . C 3 46.795 73.483 27.567 0.8 64.54 ? N2 NAG 1000 H 1 
HETATM 10 O O3 NAG . . . C 3 49.36 74.911 27.659 0.8 69.82 ? O3 NAG 1000 H 1 
HETATM 11 O O4 NAG . . . C 3 49.218 77.117 25.61 0.8 64.2 ? O4 NAG 1000 H 1 
HETATM 12 O O5 NAG . . . C 3 47.576 74.261 24.092 0.8 67.06 ? O5 NAG 1000 H 1 
HETATM 13 O O6 NAG . . . C 3 47.377 75.672 21.952 0.8 66.09 ? O6 NAG 1000 H 1 
HETATM 14 O O7 NAG . . . C 3 47.841 71.548 27.995 0.8 63.86 ? O7 NAG 1000 H 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#