data_4P9P # _model_server_result.job_id cbE6bDtEdiUqSEjCoyDQ0Q _model_server_result.datetime_utc '2024-10-19 15:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":304}' # _entry.id 4P9P # _exptl.entry_id 4P9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P9P _cell.length_a 80.17 _cell.length_b 330.94 _cell.length_c 79.98 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P9P _symmetry.cell_setting . _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,S,T 1 1,2 C,D,M,N,O,P,Q,R,U,V 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -80.17 0 39.99 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 O N N ? 4 P N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4P9P _atom_sites.fract_transf_matrix[1][1] 0.012473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 12P A 1 301 350 12P 12P . F 3 BR A 1 302 400 BR BR . G 4 NA A 1 303 450 NA NA . H 4 NA A 1 304 451 NA NA . I 3 BR A 1 305 400 BR BR . J 5 2CV B 1 301 300 2CV 2CV . K 5 2CV B 1 302 300 2CV 2CV . L 2 12P B 1 303 350 12P 12P . M 5 2CV C 1 301 300 2CV 2CV . N 3 BR C 1 302 400 BR BR . O 4 NA C 1 303 450 NA NA . P 4 NA C 1 304 451 NA NA . Q 5 2CV D 1 301 300 2CV 2CV . R 3 BR D 1 302 400 BR BR . S 6 HOH A 1 401 130 HOH HOH . S 6 HOH A 2 402 156 HOH HOH . S 6 HOH A 3 403 393 HOH HOH . S 6 HOH A 4 404 127 HOH HOH . S 6 HOH A 5 405 319 HOH HOH . S 6 HOH A 6 406 189 HOH HOH . S 6 HOH A 7 407 306 HOH HOH . S 6 HOH A 8 408 240 HOH HOH . S 6 HOH A 9 409 235 HOH HOH . S 6 HOH A 10 410 321 HOH HOH . S 6 HOH A 11 411 128 HOH HOH . S 6 HOH A 12 412 134 HOH HOH . S 6 HOH A 13 413 136 HOH HOH . S 6 HOH A 14 414 147 HOH HOH . S 6 HOH A 15 415 150 HOH HOH . S 6 HOH A 16 416 162 HOH HOH . S 6 HOH A 17 417 165 HOH HOH . S 6 HOH A 18 418 171 HOH HOH . S 6 HOH A 19 419 179 HOH HOH . S 6 HOH A 20 420 185 HOH HOH . S 6 HOH A 21 421 195 HOH HOH . S 6 HOH A 22 422 201 HOH HOH . S 6 HOH A 23 423 206 HOH HOH . S 6 HOH A 24 424 218 HOH HOH . S 6 HOH A 25 425 221 HOH HOH . S 6 HOH A 26 426 238 HOH HOH . S 6 HOH A 27 427 241 HOH HOH . S 6 HOH A 28 428 248 HOH HOH . S 6 HOH A 29 429 258 HOH HOH . S 6 HOH A 30 430 260 HOH HOH . S 6 HOH A 31 431 266 HOH HOH . S 6 HOH A 32 432 269 HOH HOH . S 6 HOH A 33 433 276 HOH HOH . S 6 HOH A 34 434 278 HOH HOH . S 6 HOH A 35 435 295 HOH HOH . S 6 HOH A 36 436 304 HOH HOH . S 6 HOH A 37 437 310 HOH HOH . S 6 HOH A 38 438 311 HOH HOH . S 6 HOH A 39 439 314 HOH HOH . S 6 HOH A 40 440 322 HOH HOH . S 6 HOH A 41 441 329 HOH HOH . S 6 HOH A 42 442 335 HOH HOH . S 6 HOH A 43 443 340 HOH HOH . S 6 HOH A 44 444 341 HOH HOH . S 6 HOH A 45 445 343 HOH HOH . S 6 HOH A 46 446 351 HOH HOH . S 6 HOH A 47 447 355 HOH HOH . S 6 HOH A 48 448 357 HOH HOH . S 6 HOH A 49 449 358 HOH HOH . S 6 HOH A 50 450 359 HOH HOH . S 6 HOH A 51 451 366 HOH HOH . S 6 HOH A 52 452 369 HOH HOH . S 6 HOH A 53 453 371 HOH HOH . S 6 HOH A 54 454 373 HOH HOH . S 6 HOH A 55 455 380 HOH HOH . S 6 HOH A 56 456 381 HOH HOH . S 6 HOH A 57 457 384 HOH HOH . S 6 HOH A 58 458 388 HOH HOH . S 6 HOH A 59 459 390 HOH HOH . S 6 HOH A 60 460 396 HOH HOH . S 6 HOH A 61 461 397 HOH HOH . T 6 HOH B 1 401 364 HOH HOH . T 6 HOH B 2 402 160 HOH HOH . T 6 HOH B 3 403 247 HOH HOH . T 6 HOH B 4 404 138 HOH HOH . T 6 HOH B 5 405 191 HOH HOH . T 6 HOH B 6 406 279 HOH HOH . T 6 HOH B 7 407 214 HOH HOH . T 6 HOH B 8 408 277 HOH HOH . T 6 HOH B 9 409 350 HOH HOH . T 6 HOH B 10 410 202 HOH HOH . T 6 HOH B 11 411 197 HOH HOH . T 6 HOH B 12 412 254 HOH HOH . T 6 HOH B 13 413 126 HOH HOH . T 6 HOH B 14 414 131 HOH HOH . T 6 HOH B 15 415 139 HOH HOH . T 6 HOH B 16 416 144 HOH HOH . T 6 HOH B 17 417 153 HOH HOH . T 6 HOH B 18 418 154 HOH HOH . T 6 HOH B 19 419 155 HOH HOH . T 6 HOH B 20 420 174 HOH HOH . T 6 HOH B 21 421 177 HOH HOH . T 6 HOH B 22 422 180 HOH HOH . T 6 HOH B 23 423 182 HOH HOH . T 6 HOH B 24 424 184 HOH HOH . T 6 HOH B 25 425 186 HOH HOH . T 6 HOH B 26 426 188 HOH HOH . T 6 HOH B 27 427 211 HOH HOH . T 6 HOH B 28 428 213 HOH HOH . T 6 HOH B 29 429 217 HOH HOH . T 6 HOH B 30 430 219 HOH HOH . T 6 HOH B 31 431 225 HOH HOH . T 6 HOH B 32 432 231 HOH HOH . T 6 HOH B 33 433 236 HOH HOH . T 6 HOH B 34 434 244 HOH HOH . T 6 HOH B 35 435 255 HOH HOH . T 6 HOH B 36 436 265 HOH HOH . T 6 HOH B 37 437 268 HOH HOH . T 6 HOH B 38 438 270 HOH HOH . T 6 HOH B 39 439 291 HOH HOH . T 6 HOH B 40 440 292 HOH HOH . T 6 HOH B 41 441 296 HOH HOH . T 6 HOH B 42 442 307 HOH HOH . T 6 HOH B 43 443 309 HOH HOH . T 6 HOH B 44 444 316 HOH HOH . T 6 HOH B 45 445 324 HOH HOH . T 6 HOH B 46 446 325 HOH HOH . T 6 HOH B 47 447 328 HOH HOH . T 6 HOH B 48 448 330 HOH HOH . T 6 HOH B 49 449 331 HOH HOH . T 6 HOH B 50 450 342 HOH HOH . T 6 HOH B 51 451 347 HOH HOH . T 6 HOH B 52 452 354 HOH HOH . T 6 HOH B 53 453 361 HOH HOH . T 6 HOH B 54 454 370 HOH HOH . T 6 HOH B 55 455 378 HOH HOH . T 6 HOH B 56 456 382 HOH HOH . T 6 HOH B 57 457 387 HOH HOH . T 6 HOH B 58 458 394 HOH HOH . T 6 HOH B 59 459 395 HOH HOH . T 6 HOH B 60 460 398 HOH HOH . U 6 HOH C 1 401 194 HOH HOH . U 6 HOH C 2 402 143 HOH HOH . U 6 HOH C 3 403 239 HOH HOH . U 6 HOH C 4 404 142 HOH HOH . U 6 HOH C 5 405 148 HOH HOH . U 6 HOH C 6 406 208 HOH HOH . U 6 HOH C 7 407 183 HOH HOH . U 6 HOH C 8 408 267 HOH HOH . U 6 HOH C 9 409 391 HOH HOH . U 6 HOH C 10 410 274 HOH HOH . U 6 HOH C 11 411 374 HOH HOH . U 6 HOH C 12 412 210 HOH HOH . U 6 HOH C 13 413 346 HOH HOH . U 6 HOH C 14 414 337 HOH HOH . U 6 HOH C 15 415 264 HOH HOH . U 6 HOH C 16 416 281 HOH HOH . U 6 HOH C 17 417 129 HOH HOH . U 6 HOH C 18 418 132 HOH HOH . U 6 HOH C 19 419 141 HOH HOH . U 6 HOH C 20 420 145 HOH HOH . U 6 HOH C 21 421 152 HOH HOH . U 6 HOH C 22 422 161 HOH HOH . U 6 HOH C 23 423 163 HOH HOH . U 6 HOH C 24 424 164 HOH HOH . U 6 HOH C 25 425 166 HOH HOH . U 6 HOH C 26 426 170 HOH HOH . U 6 HOH C 27 427 172 HOH HOH . U 6 HOH C 28 428 178 HOH HOH . U 6 HOH C 29 429 187 HOH HOH . U 6 HOH C 30 430 190 HOH HOH . U 6 HOH C 31 431 192 HOH HOH . U 6 HOH C 32 432 196 HOH HOH . U 6 HOH C 33 433 200 HOH HOH . U 6 HOH C 34 434 205 HOH HOH . U 6 HOH C 35 435 207 HOH HOH . U 6 HOH C 36 436 209 HOH HOH . U 6 HOH C 37 437 212 HOH HOH . U 6 HOH C 38 438 216 HOH HOH . U 6 HOH C 39 439 222 HOH HOH . U 6 HOH C 40 440 229 HOH HOH . U 6 HOH C 41 441 230 HOH HOH . U 6 HOH C 42 442 233 HOH HOH . U 6 HOH C 43 443 242 HOH HOH . U 6 HOH C 44 444 243 HOH HOH . U 6 HOH C 45 445 249 HOH HOH . U 6 HOH C 46 446 250 HOH HOH . U 6 HOH C 47 447 252 HOH HOH . U 6 HOH C 48 448 259 HOH HOH . U 6 HOH C 49 449 261 HOH HOH . U 6 HOH C 50 450 273 HOH HOH . U 6 HOH C 51 451 285 HOH HOH . U 6 HOH C 52 452 286 HOH HOH . U 6 HOH C 53 453 287 HOH HOH . U 6 HOH C 54 454 288 HOH HOH . U 6 HOH C 55 455 290 HOH HOH . U 6 HOH C 56 456 297 HOH HOH . U 6 HOH C 57 457 299 HOH HOH . U 6 HOH C 58 458 301 HOH HOH . U 6 HOH C 59 459 302 HOH HOH . U 6 HOH C 60 460 303 HOH HOH . U 6 HOH C 61 461 305 HOH HOH . U 6 HOH C 62 462 312 HOH HOH . U 6 HOH C 63 463 320 HOH HOH . U 6 HOH C 64 464 323 HOH HOH . U 6 HOH C 65 465 333 HOH HOH . U 6 HOH C 66 466 334 HOH HOH . U 6 HOH C 67 467 336 HOH HOH . U 6 HOH C 68 468 344 HOH HOH . U 6 HOH C 69 469 349 HOH HOH . U 6 HOH C 70 470 352 HOH HOH . U 6 HOH C 71 471 353 HOH HOH . U 6 HOH C 72 472 356 HOH HOH . U 6 HOH C 73 473 365 HOH HOH . U 6 HOH C 74 474 376 HOH HOH . U 6 HOH C 75 475 383 HOH HOH . U 6 HOH C 76 476 392 HOH HOH . V 6 HOH D 1 401 389 HOH HOH . V 6 HOH D 2 402 149 HOH HOH . V 6 HOH D 3 403 175 HOH HOH . V 6 HOH D 4 404 253 HOH HOH . V 6 HOH D 5 405 135 HOH HOH . V 6 HOH D 6 406 146 HOH HOH . V 6 HOH D 7 407 294 HOH HOH . V 6 HOH D 8 408 173 HOH HOH . V 6 HOH D 9 409 159 HOH HOH . V 6 HOH D 10 410 199 HOH HOH . V 6 HOH D 11 411 137 HOH HOH . V 6 HOH D 12 412 345 HOH HOH . V 6 HOH D 13 413 367 HOH HOH . V 6 HOH D 14 414 256 HOH HOH . V 6 HOH D 15 415 193 HOH HOH . V 6 HOH D 16 416 284 HOH HOH . V 6 HOH D 17 417 133 HOH HOH . V 6 HOH D 18 418 140 HOH HOH . V 6 HOH D 19 419 151 HOH HOH . V 6 HOH D 20 420 157 HOH HOH . V 6 HOH D 21 421 158 HOH HOH . V 6 HOH D 22 422 167 HOH HOH . V 6 HOH D 23 423 168 HOH HOH . V 6 HOH D 24 424 169 HOH HOH . V 6 HOH D 25 425 176 HOH HOH . V 6 HOH D 26 426 181 HOH HOH . V 6 HOH D 27 427 198 HOH HOH . V 6 HOH D 28 428 203 HOH HOH . V 6 HOH D 29 429 204 HOH HOH . V 6 HOH D 30 430 215 HOH HOH . V 6 HOH D 31 431 220 HOH HOH . V 6 HOH D 32 432 223 HOH HOH . V 6 HOH D 33 433 224 HOH HOH . V 6 HOH D 34 434 226 HOH HOH . V 6 HOH D 35 435 227 HOH HOH . V 6 HOH D 36 436 228 HOH HOH . V 6 HOH D 37 437 232 HOH HOH . V 6 HOH D 38 438 234 HOH HOH . V 6 HOH D 39 439 237 HOH HOH . V 6 HOH D 40 440 245 HOH HOH . V 6 HOH D 41 441 246 HOH HOH . V 6 HOH D 42 442 251 HOH HOH . V 6 HOH D 43 443 257 HOH HOH . V 6 HOH D 44 444 262 HOH HOH . V 6 HOH D 45 445 263 HOH HOH . V 6 HOH D 46 446 271 HOH HOH . V 6 HOH D 47 447 272 HOH HOH . V 6 HOH D 48 448 275 HOH HOH . V 6 HOH D 49 449 280 HOH HOH . V 6 HOH D 50 450 282 HOH HOH . V 6 HOH D 51 451 283 HOH HOH . V 6 HOH D 52 452 289 HOH HOH . V 6 HOH D 53 453 293 HOH HOH . V 6 HOH D 54 454 298 HOH HOH . V 6 HOH D 55 455 300 HOH HOH . V 6 HOH D 56 456 308 HOH HOH . V 6 HOH D 57 457 313 HOH HOH . V 6 HOH D 58 458 315 HOH HOH . V 6 HOH D 59 459 317 HOH HOH . V 6 HOH D 60 460 318 HOH HOH . V 6 HOH D 61 461 326 HOH HOH . V 6 HOH D 62 462 327 HOH HOH . V 6 HOH D 63 463 332 HOH HOH . V 6 HOH D 64 464 338 HOH HOH . V 6 HOH D 65 465 339 HOH HOH . V 6 HOH D 66 466 348 HOH HOH . V 6 HOH D 67 467 360 HOH HOH . V 6 HOH D 68 468 362 HOH HOH . V 6 HOH D 69 469 363 HOH HOH . V 6 HOH D 70 470 368 HOH HOH . V 6 HOH D 71 471 372 HOH HOH . V 6 HOH D 72 472 375 HOH HOH . V 6 HOH D 73 473 377 HOH HOH . V 6 HOH D 74 474 379 HOH HOH . V 6 HOH D 75 475 385 HOH HOH . V 6 HOH D 76 476 386 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -40.079 _atom_site.Cartn_y -60.954 _atom_site.Cartn_z 20.002 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 78.41 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #