data_4P9S # _model_server_result.job_id Mj2Ediq6tr5Hp-ApGkOI7g _model_server_result.datetime_utc '2024-12-26 12:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 4P9S # _exptl.entry_id 4P9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P9S _cell.length_a 85.211 _cell.length_b 131.442 _cell.length_c 171.924 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P9S _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 65 A HIS 84 1_555 C C8M FAD . A FAD 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale2 B NE2 HIS 65 B HIS 84 1_555 D C8M FAD . B FAD 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4P9S _atom_sites.fract_transf_matrix[1][1] 0.011736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 905 FAD FAD . D 2 FAD B 1 901 905 FAD FAD . E 3 HOH A 1 1001 7 HOH HOH . E 3 HOH A 2 1002 8 HOH HOH . E 3 HOH A 3 1003 11 HOH HOH . E 3 HOH A 4 1004 13 HOH HOH . E 3 HOH A 5 1005 14 HOH HOH . E 3 HOH A 6 1006 16 HOH HOH . E 3 HOH A 7 1007 18 HOH HOH . E 3 HOH A 8 1008 19 HOH HOH . E 3 HOH A 9 1009 29 HOH HOH . E 3 HOH A 10 1010 30 HOH HOH . E 3 HOH A 11 1011 33 HOH HOH . E 3 HOH A 12 1012 34 HOH HOH . E 3 HOH A 13 1013 35 HOH HOH . E 3 HOH A 14 1014 38 HOH HOH . E 3 HOH A 15 1015 39 HOH HOH . E 3 HOH A 16 1016 40 HOH HOH . E 3 HOH A 17 1017 41 HOH HOH . E 3 HOH A 18 1018 45 HOH HOH . E 3 HOH A 19 1019 48 HOH HOH . E 3 HOH A 20 1020 50 HOH HOH . E 3 HOH A 21 1021 51 HOH HOH . E 3 HOH A 22 1022 60 HOH HOH . E 3 HOH A 23 1023 61 HOH HOH . E 3 HOH A 24 1024 63 HOH HOH . E 3 HOH A 25 1025 65 HOH HOH . E 3 HOH A 26 1026 69 HOH HOH . E 3 HOH A 27 1027 70 HOH HOH . E 3 HOH A 28 1028 71 HOH HOH . E 3 HOH A 29 1029 72 HOH HOH . E 3 HOH A 30 1030 74 HOH HOH . E 3 HOH A 31 1031 76 HOH HOH . E 3 HOH A 32 1032 77 HOH HOH . E 3 HOH A 33 1033 78 HOH HOH . E 3 HOH A 34 1034 84 HOH HOH . E 3 HOH A 35 1035 85 HOH HOH . E 3 HOH A 36 1036 86 HOH HOH . E 3 HOH A 37 1037 88 HOH HOH . E 3 HOH A 38 1038 89 HOH HOH . E 3 HOH A 39 1039 93 HOH HOH . E 3 HOH A 40 1040 94 HOH HOH . E 3 HOH A 41 1041 96 HOH HOH . E 3 HOH A 42 1042 98 HOH HOH . E 3 HOH A 43 1043 99 HOH HOH . E 3 HOH A 44 1044 100 HOH HOH . E 3 HOH A 45 1045 102 HOH HOH . E 3 HOH A 46 1046 103 HOH HOH . E 3 HOH A 47 1047 104 HOH HOH . F 3 HOH B 1 1001 28 HOH HOH . F 3 HOH B 2 1002 5 HOH HOH . F 3 HOH B 3 1003 1 HOH HOH . F 3 HOH B 4 1004 2 HOH HOH . F 3 HOH B 5 1005 3 HOH HOH . F 3 HOH B 6 1006 4 HOH HOH . F 3 HOH B 7 1007 6 HOH HOH . F 3 HOH B 8 1008 9 HOH HOH . F 3 HOH B 9 1009 10 HOH HOH . F 3 HOH B 10 1010 12 HOH HOH . F 3 HOH B 11 1011 15 HOH HOH . F 3 HOH B 12 1012 17 HOH HOH . F 3 HOH B 13 1013 20 HOH HOH . F 3 HOH B 14 1014 21 HOH HOH . F 3 HOH B 15 1015 22 HOH HOH . F 3 HOH B 16 1016 23 HOH HOH . F 3 HOH B 17 1017 24 HOH HOH . F 3 HOH B 18 1018 25 HOH HOH . F 3 HOH B 19 1019 26 HOH HOH . F 3 HOH B 20 1020 27 HOH HOH . F 3 HOH B 21 1021 31 HOH HOH . F 3 HOH B 22 1022 32 HOH HOH . F 3 HOH B 23 1023 36 HOH HOH . F 3 HOH B 24 1024 37 HOH HOH . F 3 HOH B 25 1025 42 HOH HOH . F 3 HOH B 26 1026 43 HOH HOH . F 3 HOH B 27 1027 44 HOH HOH . F 3 HOH B 28 1028 46 HOH HOH . F 3 HOH B 29 1029 47 HOH HOH . F 3 HOH B 30 1030 49 HOH HOH . F 3 HOH B 31 1031 52 HOH HOH . F 3 HOH B 32 1032 53 HOH HOH . F 3 HOH B 33 1033 54 HOH HOH . F 3 HOH B 34 1034 55 HOH HOH . F 3 HOH B 35 1035 56 HOH HOH . F 3 HOH B 36 1036 57 HOH HOH . F 3 HOH B 37 1037 58 HOH HOH . F 3 HOH B 38 1038 59 HOH HOH . F 3 HOH B 39 1039 62 HOH HOH . F 3 HOH B 40 1040 64 HOH HOH . F 3 HOH B 41 1041 66 HOH HOH . F 3 HOH B 42 1042 67 HOH HOH . F 3 HOH B 43 1043 68 HOH HOH . F 3 HOH B 44 1044 73 HOH HOH . F 3 HOH B 45 1045 75 HOH HOH . F 3 HOH B 46 1046 79 HOH HOH . F 3 HOH B 47 1047 80 HOH HOH . F 3 HOH B 48 1048 81 HOH HOH . F 3 HOH B 49 1049 82 HOH HOH . F 3 HOH B 50 1050 83 HOH HOH . F 3 HOH B 51 1051 87 HOH HOH . F 3 HOH B 52 1052 90 HOH HOH . F 3 HOH B 53 1053 91 HOH HOH . F 3 HOH B 54 1054 92 HOH HOH . F 3 HOH B 55 1055 95 HOH HOH . F 3 HOH B 56 1056 97 HOH HOH . F 3 HOH B 57 1057 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 -40.674 9.519 65.815 1 25.5 ? PA FAD 901 A 1 HETATM 2 O O1A FAD . . . C 2 -41.27 10.701 65.137 1 25.04 ? O1A FAD 901 A 1 HETATM 3 O O2A FAD . . . C 2 -41.433 8.249 66.006 1 29.39 ? O2A FAD 901 A 1 HETATM 4 O O5B FAD . . . C 2 -40.209 10.015 67.234 1 27.05 ? O5B FAD 901 A 1 HETATM 5 C C5B FAD . . . C 2 -39.468 11.224 67.342 1 26.94 ? C5B FAD 901 A 1 HETATM 6 C C4B FAD . . . C 2 -39.623 11.718 68.789 1 25.99 ? C4B FAD 901 A 1 HETATM 7 O O4B FAD . . . C 2 -38.536 12.611 69.142 1 25.68 ? O4B FAD 901 A 1 HETATM 8 C C3B FAD . . . C 2 -40.969 12.436 68.974 1 23.75 ? C3B FAD 901 A 1 HETATM 9 O O3B FAD . . . C 2 -41.823 11.761 69.889 1 22.34 ? O3B FAD 901 A 1 HETATM 10 C C2B FAD . . . C 2 -40.618 13.813 69.473 1 22.95 ? C2B FAD 901 A 1 HETATM 11 O O2B FAD . . . C 2 -41.476 14.3 70.531 1 21.79 ? O2B FAD 901 A 1 HETATM 12 C C1B FAD . . . C 2 -39.138 13.665 69.906 1 24.44 ? C1B FAD 901 A 1 HETATM 13 N N9A FAD . . . C 2 -38.503 14.983 69.841 1 23.09 ? N9A FAD 901 A 1 HETATM 14 C C8A FAD . . . C 2 -38.699 15.919 68.89 1 24.5 ? C8A FAD 901 A 1 HETATM 15 N N7A FAD . . . C 2 -38.012 17.044 69.147 1 23.51 ? N7A FAD 901 A 1 HETATM 16 C C5A FAD . . . C 2 -37.388 16.823 70.288 1 22.77 ? C5A FAD 901 A 1 HETATM 17 C C6A FAD . . . C 2 -36.539 17.62 71.112 1 21.55 ? C6A FAD 901 A 1 HETATM 18 N N6A FAD . . . C 2 -36.245 18.849 70.673 1 22.25 ? N6A FAD 901 A 1 HETATM 19 N N1A FAD . . . C 2 -36.089 17.09 72.248 1 22.06 ? N1A FAD 901 A 1 HETATM 20 C C2A FAD . . . C 2 -36.384 15.852 72.626 1 23.1 ? C2A FAD 901 A 1 HETATM 21 N N3A FAD . . . C 2 -37.187 15.049 71.917 1 23.88 ? N3A FAD 901 A 1 HETATM 22 C C4A FAD . . . C 2 -37.729 15.489 70.769 1 23.69 ? C4A FAD 901 A 1 HETATM 23 N N1 FAD . . . C 2 -43.088 2.339 59.6 1 22.47 ? N1 FAD 901 A 1 HETATM 24 C C2 FAD . . . C 2 -43.048 0.978 59.498 1 22.25 ? C2 FAD 901 A 1 HETATM 25 O O2 FAD . . . C 2 -41.982 0.395 59.742 1 24.56 ? O2 FAD 901 A 1 HETATM 26 N N3 FAD . . . C 2 -44.08 0.213 59.145 1 21.27 ? N3 FAD 901 A 1 HETATM 27 C C4 FAD . . . C 2 -45.263 0.736 58.863 1 23.08 ? C4 FAD 901 A 1 HETATM 28 O O4 FAD . . . C 2 -46.272 0.077 58.513 1 24.82 ? O4 FAD 901 A 1 HETATM 29 C C4X FAD . . . C 2 -45.416 2.178 58.931 1 22.56 ? C4X FAD 901 A 1 HETATM 30 N N5 FAD . . . C 2 -46.604 2.685 58.612 1 23.22 ? N5 FAD 901 A 1 HETATM 31 C C5X FAD . . . C 2 -46.833 4.01 58.691 1 23.47 ? C5X FAD 901 A 1 HETATM 32 C C6 FAD . . . C 2 -48.094 4.526 58.356 1 24.1 ? C6 FAD 901 A 1 HETATM 33 C C7 FAD . . . C 2 -48.359 5.891 58.409 1 24.67 ? C7 FAD 901 A 1 HETATM 34 C C7M FAD . . . C 2 -49.709 6.501 58.086 1 24.32 ? C7M FAD 901 A 1 HETATM 35 C C8 FAD . . . C 2 -47.278 6.775 58.833 1 24.17 ? C8 FAD 901 A 1 HETATM 36 C C8M FAD . . . C 2 -47.497 8.269 58.999 1 25.93 ? C8M FAD 901 A 1 HETATM 37 C C9 FAD . . . C 2 -46.037 6.252 59.144 1 25.12 ? C9 FAD 901 A 1 HETATM 38 C C9A FAD . . . C 2 -45.741 4.901 59.101 1 23.04 ? C9A FAD 901 A 1 HETATM 39 N N10 FAD . . . C 2 -44.449 4.396 59.412 1 21.65 ? N10 FAD 901 A 1 HETATM 40 C C10 FAD . . . C 2 -44.26 2.995 59.345 1 23.39 ? C10 FAD 901 A 1 HETATM 41 C C1' FAD . . . C 2 -43.349 5.259 59.766 1 20.22 ? C1' FAD 901 A 1 HETATM 42 C C2' FAD . . . C 2 -42.919 5.201 61.19 1 20.89 ? C2' FAD 901 A 1 HETATM 43 O O2' FAD . . . C 2 -43.98 5.781 61.919 1 22.86 ? O2' FAD 901 A 1 HETATM 44 C C3' FAD . . . C 2 -41.618 5.992 61.348 1 20.96 ? C3' FAD 901 A 1 HETATM 45 O O3' FAD . . . C 2 -40.636 5.49 60.409 1 19.78 ? O3' FAD 901 A 1 HETATM 46 C C4' FAD . . . C 2 -41.114 5.922 62.778 1 21.61 ? C4' FAD 901 A 1 HETATM 47 O O4' FAD . . . C 2 -42.195 6.088 63.711 1 21.9 ? O4' FAD 901 A 1 HETATM 48 C C5' FAD . . . C 2 -40.045 6.957 63.109 1 23.29 ? C5' FAD 901 A 1 HETATM 49 O O5' FAD . . . C 2 -39.673 6.762 64.485 1 24.71 ? O5' FAD 901 A 1 HETATM 50 P P FAD . . . C 2 -38.543 7.64 65.149 1 22.8 ? P FAD 901 A 1 HETATM 51 O O1P FAD . . . C 2 -38.207 7.22 66.565 1 25.7 ? O1P FAD 901 A 1 HETATM 52 O O2P FAD . . . C 2 -37.468 7.692 64.136 1 25.47 ? O2P FAD 901 A 1 HETATM 53 O O3P FAD . . . C 2 -39.253 9.092 65.146 1 28.21 ? O3P FAD 901 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #