data_4P9S # _model_server_result.job_id Np5x_BFAsVZBOWmmon8jgw _model_server_result.datetime_utc '2024-12-26 12:12:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 4P9S # _exptl.entry_id 4P9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P9S _cell.length_a 85.211 _cell.length_b 131.442 _cell.length_c 171.924 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P9S _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 65 A HIS 84 1_555 C C8M FAD . A FAD 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale2 B NE2 HIS 65 B HIS 84 1_555 D C8M FAD . B FAD 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4P9S _atom_sites.fract_transf_matrix[1][1] 0.011736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 905 FAD FAD . D 2 FAD B 1 901 905 FAD FAD . E 3 HOH A 1 1001 7 HOH HOH . E 3 HOH A 2 1002 8 HOH HOH . E 3 HOH A 3 1003 11 HOH HOH . E 3 HOH A 4 1004 13 HOH HOH . E 3 HOH A 5 1005 14 HOH HOH . E 3 HOH A 6 1006 16 HOH HOH . E 3 HOH A 7 1007 18 HOH HOH . E 3 HOH A 8 1008 19 HOH HOH . E 3 HOH A 9 1009 29 HOH HOH . E 3 HOH A 10 1010 30 HOH HOH . E 3 HOH A 11 1011 33 HOH HOH . E 3 HOH A 12 1012 34 HOH HOH . E 3 HOH A 13 1013 35 HOH HOH . E 3 HOH A 14 1014 38 HOH HOH . E 3 HOH A 15 1015 39 HOH HOH . E 3 HOH A 16 1016 40 HOH HOH . E 3 HOH A 17 1017 41 HOH HOH . E 3 HOH A 18 1018 45 HOH HOH . E 3 HOH A 19 1019 48 HOH HOH . E 3 HOH A 20 1020 50 HOH HOH . E 3 HOH A 21 1021 51 HOH HOH . E 3 HOH A 22 1022 60 HOH HOH . E 3 HOH A 23 1023 61 HOH HOH . E 3 HOH A 24 1024 63 HOH HOH . E 3 HOH A 25 1025 65 HOH HOH . E 3 HOH A 26 1026 69 HOH HOH . E 3 HOH A 27 1027 70 HOH HOH . E 3 HOH A 28 1028 71 HOH HOH . E 3 HOH A 29 1029 72 HOH HOH . E 3 HOH A 30 1030 74 HOH HOH . E 3 HOH A 31 1031 76 HOH HOH . E 3 HOH A 32 1032 77 HOH HOH . E 3 HOH A 33 1033 78 HOH HOH . E 3 HOH A 34 1034 84 HOH HOH . E 3 HOH A 35 1035 85 HOH HOH . E 3 HOH A 36 1036 86 HOH HOH . E 3 HOH A 37 1037 88 HOH HOH . E 3 HOH A 38 1038 89 HOH HOH . E 3 HOH A 39 1039 93 HOH HOH . E 3 HOH A 40 1040 94 HOH HOH . E 3 HOH A 41 1041 96 HOH HOH . E 3 HOH A 42 1042 98 HOH HOH . E 3 HOH A 43 1043 99 HOH HOH . E 3 HOH A 44 1044 100 HOH HOH . E 3 HOH A 45 1045 102 HOH HOH . E 3 HOH A 46 1046 103 HOH HOH . E 3 HOH A 47 1047 104 HOH HOH . F 3 HOH B 1 1001 28 HOH HOH . F 3 HOH B 2 1002 5 HOH HOH . F 3 HOH B 3 1003 1 HOH HOH . F 3 HOH B 4 1004 2 HOH HOH . F 3 HOH B 5 1005 3 HOH HOH . F 3 HOH B 6 1006 4 HOH HOH . F 3 HOH B 7 1007 6 HOH HOH . F 3 HOH B 8 1008 9 HOH HOH . F 3 HOH B 9 1009 10 HOH HOH . F 3 HOH B 10 1010 12 HOH HOH . F 3 HOH B 11 1011 15 HOH HOH . F 3 HOH B 12 1012 17 HOH HOH . F 3 HOH B 13 1013 20 HOH HOH . F 3 HOH B 14 1014 21 HOH HOH . F 3 HOH B 15 1015 22 HOH HOH . F 3 HOH B 16 1016 23 HOH HOH . F 3 HOH B 17 1017 24 HOH HOH . F 3 HOH B 18 1018 25 HOH HOH . F 3 HOH B 19 1019 26 HOH HOH . F 3 HOH B 20 1020 27 HOH HOH . F 3 HOH B 21 1021 31 HOH HOH . F 3 HOH B 22 1022 32 HOH HOH . F 3 HOH B 23 1023 36 HOH HOH . F 3 HOH B 24 1024 37 HOH HOH . F 3 HOH B 25 1025 42 HOH HOH . F 3 HOH B 26 1026 43 HOH HOH . F 3 HOH B 27 1027 44 HOH HOH . F 3 HOH B 28 1028 46 HOH HOH . F 3 HOH B 29 1029 47 HOH HOH . F 3 HOH B 30 1030 49 HOH HOH . F 3 HOH B 31 1031 52 HOH HOH . F 3 HOH B 32 1032 53 HOH HOH . F 3 HOH B 33 1033 54 HOH HOH . F 3 HOH B 34 1034 55 HOH HOH . F 3 HOH B 35 1035 56 HOH HOH . F 3 HOH B 36 1036 57 HOH HOH . F 3 HOH B 37 1037 58 HOH HOH . F 3 HOH B 38 1038 59 HOH HOH . F 3 HOH B 39 1039 62 HOH HOH . F 3 HOH B 40 1040 64 HOH HOH . F 3 HOH B 41 1041 66 HOH HOH . F 3 HOH B 42 1042 67 HOH HOH . F 3 HOH B 43 1043 68 HOH HOH . F 3 HOH B 44 1044 73 HOH HOH . F 3 HOH B 45 1045 75 HOH HOH . F 3 HOH B 46 1046 79 HOH HOH . F 3 HOH B 47 1047 80 HOH HOH . F 3 HOH B 48 1048 81 HOH HOH . F 3 HOH B 49 1049 82 HOH HOH . F 3 HOH B 50 1050 83 HOH HOH . F 3 HOH B 51 1051 87 HOH HOH . F 3 HOH B 52 1052 90 HOH HOH . F 3 HOH B 53 1053 91 HOH HOH . F 3 HOH B 54 1054 92 HOH HOH . F 3 HOH B 55 1055 95 HOH HOH . F 3 HOH B 56 1056 97 HOH HOH . F 3 HOH B 57 1057 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 2 -64.759 25.717 18.535 1 19.61 ? PA FAD 901 B 1 HETATM 2 O O1A FAD . . . D 2 -64.89 25.371 19.997 1 19.96 ? O1A FAD 901 B 1 HETATM 3 O O2A FAD . . . D 2 -63.758 26.72 18.123 1 21.02 ? O2A FAD 901 B 1 HETATM 4 O O5B FAD . . . D 2 -66.182 26.24 18.038 1 18.68 ? O5B FAD 901 B 1 HETATM 5 C C5B FAD . . . D 2 -67.346 25.441 18.094 1 17.37 ? C5B FAD 901 B 1 HETATM 6 C C4B FAD . . . D 2 -68.5 26.382 17.765 1 17.6 ? C4B FAD 901 B 1 HETATM 7 O O4B FAD . . . D 2 -69.791 25.732 17.765 1 18.52 ? O4B FAD 901 B 1 HETATM 8 C C3B FAD . . . D 2 -68.57 27.518 18.754 1 17.87 ? C3B FAD 901 B 1 HETATM 9 O O3B FAD . . . D 2 -68.561 28.824 18.123 1 16.33 ? O3B FAD 901 B 1 HETATM 10 C C2B FAD . . . D 2 -69.873 27.249 19.474 1 18.66 ? C2B FAD 901 B 1 HETATM 11 O O2B FAD . . . D 2 -70.3 28.496 20.004 1 18.69 ? O2B FAD 901 B 1 HETATM 12 C C1B FAD . . . D 2 -70.738 26.578 18.398 1 19.08 ? C1B FAD 901 B 1 HETATM 13 N N9A FAD . . . D 2 -71.922 25.798 18.865 1 19.64 ? N9A FAD 901 B 1 HETATM 14 C C8A FAD . . . D 2 -71.977 25 19.952 1 19.58 ? C8A FAD 901 B 1 HETATM 15 N N7A FAD . . . D 2 -73.211 24.418 20.064 1 19.63 ? N7A FAD 901 B 1 HETATM 16 C C5A FAD . . . D 2 -73.977 24.853 19.03 1 18.55 ? C5A FAD 901 B 1 HETATM 17 C C6A FAD . . . D 2 -75.384 24.658 18.574 1 18.31 ? C6A FAD 901 B 1 HETATM 18 N N6A FAD . . . D 2 -76.261 23.829 19.251 1 17.19 ? N6A FAD 901 B 1 HETATM 19 N N1A FAD . . . D 2 -75.785 25.308 17.453 1 17.82 ? N1A FAD 901 B 1 HETATM 20 C C2A FAD . . . D 2 -74.948 26.082 16.759 1 19.27 ? C2A FAD 901 B 1 HETATM 21 N N3A FAD . . . D 2 -73.647 26.305 17.139 1 19.06 ? N3A FAD 901 B 1 HETATM 22 C C4A FAD . . . D 2 -73.112 25.737 18.238 1 18.83 ? C4A FAD 901 B 1 HETATM 23 N N1 FAD . . . D 2 -55.036 24.868 18.053 1 19.5 ? N1 FAD 901 B 1 HETATM 24 C C2 FAD . . . D 2 -54.021 24.974 17.153 1 20.2 ? C2 FAD 901 B 1 HETATM 25 O O2 FAD . . . D 2 -54.198 24.461 16.017 1 18.05 ? O2 FAD 901 B 1 HETATM 26 N N3 FAD . . . D 2 -52.862 25.621 17.459 1 21.5 ? N3 FAD 901 B 1 HETATM 27 C C4 FAD . . . D 2 -52.681 26.184 18.663 1 21.51 ? C4 FAD 901 B 1 HETATM 28 O O4 FAD . . . D 2 -51.631 26.739 18.982 1 25.51 ? O4 FAD 901 B 1 HETATM 29 C C4X FAD . . . D 2 -53.718 26.082 19.681 1 20.85 ? C4X FAD 901 B 1 HETATM 30 N N5 FAD . . . D 2 -53.573 26.598 20.917 1 21.26 ? N5 FAD 901 B 1 HETATM 31 C C5X FAD . . . D 2 -54.573 26.538 21.839 1 19.31 ? C5X FAD 901 B 1 HETATM 32 C C6 FAD . . . D 2 -54.383 27.085 23.112 1 18.79 ? C6 FAD 901 B 1 HETATM 33 C C7 FAD . . . D 2 -55.378 27.008 24.083 1 17.92 ? C7 FAD 901 B 1 HETATM 34 C C7M FAD . . . D 2 -55.173 27.608 25.445 1 18.07 ? C7M FAD 901 B 1 HETATM 35 C C8 FAD . . . D 2 -56.651 26.359 23.744 1 17.53 ? C8 FAD 901 B 1 HETATM 36 C C8M FAD . . . D 2 -57.776 26.326 24.735 1 18.73 ? C8M FAD 901 B 1 HETATM 37 C C9 FAD . . . D 2 -56.837 25.811 22.486 1 18.5 ? C9 FAD 901 B 1 HETATM 38 C C9A FAD . . . D 2 -55.849 25.865 21.516 1 18.58 ? C9A FAD 901 B 1 HETATM 39 N N10 FAD . . . D 2 -56.003 25.32 20.233 1 19.61 ? N10 FAD 901 B 1 HETATM 40 C C10 FAD . . . D 2 -54.953 25.388 19.297 1 20.29 ? C10 FAD 901 B 1 HETATM 41 C C1' FAD . . . D 2 -57.163 24.562 19.841 1 19.3 ? C1' FAD 901 B 1 HETATM 42 C C2' FAD . . . D 2 -58.215 25.351 19.216 1 20.18 ? C2' FAD 901 B 1 HETATM 43 O O2' FAD . . . D 2 -58.601 26.278 20.218 1 23.67 ? O2' FAD 901 B 1 HETATM 44 C C3' FAD . . . D 2 -59.272 24.322 18.892 1 19.17 ? C3' FAD 901 B 1 HETATM 45 O O3' FAD . . . D 2 -58.638 23.172 18.359 1 17.73 ? O3' FAD 901 B 1 HETATM 46 C C4' FAD . . . D 2 -60.237 24.887 17.884 1 18.32 ? C4' FAD 901 B 1 HETATM 47 O O4' FAD . . . D 2 -60.548 26.22 18.282 1 18.34 ? O4' FAD 901 B 1 HETATM 48 C C5' FAD . . . D 2 -61.541 24.1 17.802 1 17.82 ? C5' FAD 901 B 1 HETATM 49 O O5' FAD . . . D 2 -62.234 24.619 16.692 1 15.72 ? O5' FAD 901 B 1 HETATM 50 P P FAD . . . D 2 -63.66 24.104 16.354 1 17.86 ? P FAD 901 B 1 HETATM 51 O O1P FAD . . . D 2 -64.271 24.858 15.177 1 15.94 ? O1P FAD 901 B 1 HETATM 52 O O2P FAD . . . D 2 -63.533 22.566 16.152 1 16.82 ? O2P FAD 901 B 1 HETATM 53 O O3P FAD . . . D 2 -64.528 24.351 17.712 1 18.79 ? O3P FAD 901 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #