data_4PA7 # _model_server_result.job_id XKSeU4fOLRxHGfxx-cQxwQ _model_server_result.datetime_utc '2025-03-29 01:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pa7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":302}' # _entry.id 4PA7 # _exptl.entry_id 4PA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PA7 _cell.length_a 79.81 _cell.length_b 328.86 _cell.length_c 79.92 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PA7 _symmetry.cell_setting . _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,S,T 1 1,2 C,D,M,N,O,P,Q,R,U,V 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -79.81 0 39.96 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G NA NA . A NA 303 1_555 S O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc2 G NA NA . A NA 303 1_555 S O HOH . A HOH 402 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 4PA7 _atom_sites.fract_transf_matrix[1][1] 0.01253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2CV A 1 301 300 2CV 2CV . F 3 12P A 1 302 350 12P 12P . G 4 NA A 1 303 403 NA NA . H 2 2CV B 1 301 300 2CV 2CV . I 3 12P B 1 302 350 12P 12P . J 4 NA B 1 303 401 NA NA . K 4 NA B 1 304 402 NA NA . L 4 NA B 1 305 404 NA NA . M 2 2CV C 1 301 300 2CV 2CV . N 3 12P C 1 302 350 12P 12P . O 4 NA C 1 303 401 NA NA . P 2 2CV D 1 301 300 2CV 2CV . Q 4 NA D 1 302 402 NA NA . R 4 NA D 1 303 403 NA NA . S 5 HOH A 1 401 1 HOH HOH . S 5 HOH A 2 402 6 HOH HOH . S 5 HOH A 3 403 8 HOH HOH . S 5 HOH A 4 404 10 HOH HOH . S 5 HOH A 5 405 11 HOH HOH . S 5 HOH A 6 406 12 HOH HOH . S 5 HOH A 7 407 21 HOH HOH . T 5 HOH B 1 401 18 HOH HOH . T 5 HOH B 2 402 2 HOH HOH . T 5 HOH B 3 403 3 HOH HOH . T 5 HOH B 4 404 4 HOH HOH . T 5 HOH B 5 405 7 HOH HOH . T 5 HOH B 6 406 9 HOH HOH . T 5 HOH B 7 407 22 HOH HOH . T 5 HOH B 8 408 23 HOH HOH . U 5 HOH C 1 401 19 HOH HOH . U 5 HOH C 2 402 20 HOH HOH . U 5 HOH C 3 403 24 HOH HOH . U 5 HOH C 4 404 25 HOH HOH . U 5 HOH C 5 405 27 HOH HOH . V 5 HOH D 1 401 17 HOH HOH . V 5 HOH D 2 402 26 HOH HOH . V 5 HOH D 3 403 13 HOH HOH . V 5 HOH D 4 404 14 HOH HOH . V 5 HOH D 5 405 15 HOH HOH . V 5 HOH D 6 406 16 HOH HOH . V 5 HOH D 7 407 28 HOH HOH . V 5 HOH D 8 408 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 12P . . . N 3 -22.444 -100.41 29.885 1 92.2 ? O16 12P 302 C 1 HETATM 2 C C15 12P . . . N 3 -22.014 -101.644 30.435 1 95.08 ? C15 12P 302 C 1 HETATM 3 C C14 12P . . . N 3 -21.152 -102.364 29.452 1 97.65 ? C14 12P 302 C 1 HETATM 4 O O13 12P . . . N 3 -19.949 -101.644 29.217 1 98.95 ? O13 12P 302 C 1 HETATM 5 C C12 12P . . . N 3 -18.917 -102.461 28.671 1 102.45 ? C12 12P 302 C 1 HETATM 6 C C11 12P . . . N 3 -17.567 -101.91 29.007 1 103.41 ? C11 12P 302 C 1 HETATM 7 O O10 12P . . . N 3 -17.371 -100.666 28.348 1 102.23 ? O10 12P 302 C 1 HETATM 8 C C9 12P . . . N 3 -16.912 -99.632 29.214 1 101.92 ? C9 12P 302 C 1 HETATM 9 C C8 12P . . . N 3 -17.8 -98.423 29.129 1 98.94 ? C8 12P 302 C 1 HETATM 10 O O7 12P . . . N 3 -17.218 -97.336 29.84 1 98.91 ? O7 12P 302 C 1 HETATM 11 C C6 12P . . . N 3 -17.847 -96.09 29.583 1 97.53 ? C6 12P 302 C 1 HETATM 12 C C5 12P . . . N 3 -16.83 -95.05 29.253 1 100.06 ? C5 12P 302 C 1 HETATM 13 O O4 12P . . . N 3 -17.474 -93.804 29.023 1 100.89 ? O4 12P 302 C 1 HETATM 14 C C3 12P . . . N 3 -16.621 -92.83 28.433 1 103.74 ? C3 12P 302 C 1 HETATM 15 C C2 12P . . . N 3 -17.005 -91.458 28.902 1 104.64 ? C2 12P 302 C 1 HETATM 16 O O1 12P . . . N 3 -18.366 -91.166 28.624 1 103.1 ? O1 12P 302 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #