data_4PAD # _model_server_result.job_id v356CtimdqyfZb7-0CvLoA _model_server_result.datetime_utc '2024-11-28 23:13:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":213}' # _entry.id 4PAD # _exptl.entry_id 4PAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.846 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PAD _cell.length_a 45 _cell.length_b 104.3 _cell.length_c 50.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.694 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B CM TCK . A TCK 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? # _chem_comp.formula 'C14 H21 Cl N2 O3 S' _chem_comp.formula_weight 332.846 _chem_comp.id TCK _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms Tos-Lys-CH2Cl # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1S TCK doub 271 n n S C1 TCK sing 272 n n O2S S TCK doub 273 n n C1 C2 TCK doub 274 n y C1 C6 TCK sing 275 n y C2 C3 TCK sing 276 n y C2 H2 TCK sing 277 n n C3 C4 TCK doub 278 n y C3 H3 TCK sing 279 n n C4 C5 TCK sing 280 n y C4 C7 TCK sing 281 n n C5 C6 TCK doub 282 n y C5 H5 TCK sing 283 n n C6 H6 TCK sing 284 n n C7 H1 TCK sing 285 n n C7 H2A TCK sing 286 n n C7 H3A TCK sing 287 n n N CA TCK sing 288 n n N H TCK sing 289 n n N S TCK sing 290 n n CA C TCK sing 291 n n CA CB TCK sing 292 n n CA HA TCK sing 293 n n C O TCK doub 294 n n C CM TCK sing 295 n n CB CG TCK sing 296 n n CB HB2 TCK sing 297 n n CB HB3 TCK sing 298 n n CG CD TCK sing 299 n n CG HG2 TCK sing 300 n n CG HG3 TCK sing 301 n n CD CE TCK sing 302 n n CD HD2 TCK sing 303 n n CD HD3 TCK sing 304 n n CE NZ TCK sing 305 n n CE HE2 TCK sing 306 n n CE HE3 TCK sing 307 n n NZ HZ1 TCK sing 308 n n NZ HZ2 TCK sing 309 n n CM HM1 TCK sing 310 n n CM HM2 TCK sing 311 n n CM CL1 TCK sing 312 n n # _atom_sites.entry_id 4PAD _atom_sites.fract_transf_matrix[1][1] 0.022222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TCK A 1 213 2 TCK TOS . C 3 HOH A 1 214 2 HOH HOH . C 3 HOH A 2 215 3 HOH HOH . C 3 HOH A 3 216 4 HOH HOH . C 3 HOH A 4 217 5 HOH HOH . C 3 HOH A 5 218 6 HOH HOH . C 3 HOH A 6 219 7 HOH HOH . C 3 HOH A 7 220 8 HOH HOH . C 3 HOH A 8 221 9 HOH HOH . C 3 HOH A 9 222 10 HOH HOH . C 3 HOH A 10 223 11 HOH HOH . C 3 HOH A 11 224 12 HOH HOH . C 3 HOH A 12 225 13 HOH HOH . C 3 HOH A 13 226 14 HOH HOH . C 3 HOH A 14 227 15 HOH HOH . C 3 HOH A 15 228 16 HOH HOH . C 3 HOH A 16 229 17 HOH HOH . C 3 HOH A 17 230 18 HOH HOH . C 3 HOH A 18 231 19 HOH HOH . C 3 HOH A 19 232 20 HOH HOH . C 3 HOH A 20 233 21 HOH HOH . C 3 HOH A 21 234 22 HOH HOH . C 3 HOH A 22 235 23 HOH HOH . C 3 HOH A 23 236 24 HOH HOH . C 3 HOH A 24 237 25 HOH HOH . C 3 HOH A 25 238 26 HOH HOH . C 3 HOH A 26 239 27 HOH HOH . C 3 HOH A 27 240 28 HOH HOH . C 3 HOH A 28 241 29 HOH HOH . C 3 HOH A 29 242 30 HOH HOH . C 3 HOH A 30 243 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S TCK . . . B 2 29.35 69.629 25.717 1 0 ? S TCK 213 A 1 HETATM 2 O O1S TCK . . . B 2 29.228 68.125 25.373 1 0 ? O1S TCK 213 A 1 HETATM 3 O O2S TCK . . . B 2 29.997 70.435 24.619 1 0 ? O2S TCK 213 A 1 HETATM 4 C C1 TCK . . . B 2 30.484 69.805 27.177 1 0 ? C1 TCK 213 A 1 HETATM 5 C C2 TCK . . . B 2 30.959 71.114 27.476 1 0 ? C2 TCK 213 A 1 HETATM 6 C C3 TCK . . . B 2 31.847 71.234 28.583 1 0 ? C3 TCK 213 A 1 HETATM 7 C C4 TCK . . . B 2 32.26 70.094 29.242 1 0 ? C4 TCK 213 A 1 HETATM 8 C C5 TCK . . . B 2 31.784 68.834 28.943 1 0 ? C5 TCK 213 A 1 HETATM 9 C C6 TCK . . . B 2 30.947 68.665 27.836 1 0 ? C6 TCK 213 A 1 HETATM 10 C C7 TCK . . . B 2 33.245 70.266 30.55 1 0 ? C7 TCK 213 A 1 HETATM 11 N N TCK . . . B 2 28.138 70.061 26.203 1 0 ? N TCK 213 A 1 HETATM 12 C CA TCK . . . B 2 26.943 70.187 25.392 1 0 ? CA TCK 213 A 1 HETATM 13 C C TCK . . . B 2 27.143 70.934 24.09 1 0 ? C TCK 213 A 1 HETATM 14 O O TCK . . . B 2 27.325 72.037 23.937 1 0 ? O TCK 213 A 1 HETATM 15 C CB TCK . . . B 2 25.926 70.675 26.38 1 0 ? CB TCK 213 A 1 HETATM 16 C CG TCK . . . B 2 24.333 70.446 25.917 1 0 ? CG TCK 213 A 1 HETATM 17 C CD TCK . . . B 2 23.619 70.69 27.059 1 0 ? CD TCK 213 A 1 HETATM 18 C CE TCK . . . B 2 22.077 70.412 26.646 1 0 ? CE TCK 213 A 1 HETATM 19 N NZ TCK . . . B 2 21.418 70.306 27.741 1 0 ? NZ TCK 213 A 1 HETATM 20 C CM TCK . . . B 2 27.169 69.98 22.945 1 0 ? CM TCK 213 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #