data_4PAE
#
_model_server_result.job_id            5eC-Rr5psFyzm-1MJLLI3A 
_model_server_result.datetime_utc      '2024-10-24 11:21:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pae 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    4PAE 
#
_exptl.entry_id    4PAE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PAE 
_cell.length_a            107.673 
_cell.length_b            107.673 
_cell.length_c            204.788 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PAE 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -204.788 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 105 A GLY 105 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc2 A O GLY 107 A GLY 107 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc3 A NE2 HIS 263 A HIS 263 1_555 B FE HEB . A HEB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 A O THR 264 A THR 264 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 A OG1 THR 315 A THR 315 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc6 A O HIS 317 A HIS 317 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc7 A O GLN 320 A GLN 320 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc8 A OD1 ASP 322 A ASP 322 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? 
metalc ? metalc9 A OD2 ASP 322 A ASP 322 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? 
metalc ? metalc10 A O SER 476 A SER 476 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 129 n n 
FE NB HEB sing 130 n n 
FE NC HEB sing 131 n n 
FE ND HEB sing 132 n n 
CHA C1A HEB doub 133 n n 
CHA C4D HEB sing 134 n n 
CHA HHA HEB sing 135 n n 
CHB C4A HEB doub 136 n n 
CHB C1B HEB sing 137 n n 
CHB HHB HEB sing 138 n n 
CHC C4B HEB doub 139 n n 
CHC C1C HEB sing 140 n n 
CHC HHC HEB sing 141 n n 
CHD C4C HEB sing 142 n n 
CHD C1D HEB doub 143 n n 
CHD HHD HEB sing 144 n n 
NA C1A HEB sing 145 n n 
NA C4A HEB sing 146 n n 
C1A C2A HEB sing 147 n n 
C2A C3A HEB doub 148 n n 
C2A CAA HEB sing 149 n n 
C3A C4A HEB sing 150 n n 
C3A CMA HEB sing 151 n n 
CMA HMA1 HEB sing 152 n n 
CMA HMA2 HEB sing 153 n n 
CMA HMA3 HEB sing 154 n n 
CAA CBA HEB sing 155 n n 
CAA HAA1 HEB sing 156 n n 
CAA HAA2 HEB sing 157 n n 
CBA CGA HEB sing 158 n n 
CBA HBA1 HEB sing 159 n n 
CBA HBA2 HEB sing 160 n n 
CGA O1A HEB doub 161 n n 
CGA O2A HEB sing 162 n n 
O2A H2A HEB sing 163 n n 
NB C1B HEB doub 164 n n 
NB C4B HEB sing 165 n n 
C1B C2B HEB sing 166 n n 
C2B C3B HEB doub 167 n n 
C2B CMB HEB sing 168 n n 
C3B C4B HEB sing 169 n n 
C3B CAB HEB sing 170 n n 
CMB HMB1 HEB sing 171 n n 
CMB HMB2 HEB sing 172 n n 
CMB HMB3 HEB sing 173 n n 
CAB CBB HEB sing 174 n n 
CAB HAB HEB sing 175 n n 
CAB HAB2 HEB sing 176 n n 
CBB HBB1 HEB sing 177 n n 
CBB HBB2 HEB sing 178 n n 
CBB HBB3 HEB sing 179 n n 
NC C1C HEB sing 180 n y 
NC C4C HEB sing 181 n y 
C1C C2C HEB doub 182 n y 
C2C C3C HEB sing 183 n y 
C2C CMC HEB sing 184 n n 
C3C C4C HEB doub 185 n y 
C3C CAC HEB sing 186 n n 
CMC HMC1 HEB sing 187 n n 
CMC HMC2 HEB sing 188 n n 
CMC HMC3 HEB sing 189 n n 
CAC CBC HEB doub 190 n n 
CAC HAC HEB sing 191 n n 
CBC HBC1 HEB sing 192 n n 
CBC HBC2 HEB sing 193 n n 
ND C1D HEB sing 194 n n 
ND C4D HEB doub 195 n n 
C1D C2D HEB sing 196 n n 
C2D C3D HEB doub 197 n n 
C2D CMD HEB sing 198 n n 
C3D C4D HEB sing 199 n n 
C3D CAD HEB sing 200 n n 
CMD HMD1 HEB sing 201 n n 
CMD HMD2 HEB sing 202 n n 
CMD HMD3 HEB sing 203 n n 
CAD CBD HEB sing 204 n n 
CAD HAD1 HEB sing 205 n n 
CAD HAD2 HEB sing 206 n n 
CBD CGD HEB sing 207 n n 
CBD HBD1 HEB sing 208 n n 
CBD HBD2 HEB sing 209 n n 
CGD O1D HEB doub 210 n n 
CGD O2D HEB sing 211 n n 
O2D H2D HEB sing 212 n n 
#
_atom_sites.entry_id                     4PAE 
_atom_sites.fract_transf_matrix[1][1]    0.009287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEB A 1 801 750 HEB HEB . 
C 3 NA A 1 802 751 NA NA . 
D 3 NA A 1 803 752 NA NA . 
E 4 NIZ A 1 804 801 NIZ NIZ . 
F 5 HOH A 1 901 940 HOH HOH . 
F 5 HOH A 2 902 925 HOH HOH . 
F 5 HOH A 3 903 939 HOH HOH . 
F 5 HOH A 4 904 911 HOH HOH . 
F 5 HOH A 5 905 942 HOH HOH . 
F 5 HOH A 6 906 910 HOH HOH . 
F 5 HOH A 7 907 938 HOH HOH . 
F 5 HOH A 8 908 932 HOH HOH . 
F 5 HOH A 9 909 921 HOH HOH . 
F 5 HOH A 10 910 904 HOH HOH . 
F 5 HOH A 11 911 907 HOH HOH . 
F 5 HOH A 12 912 908 HOH HOH . 
F 5 HOH A 13 913 926 HOH HOH . 
F 5 HOH A 14 914 933 HOH HOH . 
F 5 HOH A 15 915 901 HOH HOH . 
F 5 HOH A 16 916 902 HOH HOH . 
F 5 HOH A 17 917 903 HOH HOH . 
F 5 HOH A 18 918 905 HOH HOH . 
F 5 HOH A 19 919 912 HOH HOH . 
F 5 HOH A 20 920 913 HOH HOH . 
F 5 HOH A 21 921 914 HOH HOH . 
F 5 HOH A 22 922 915 HOH HOH . 
F 5 HOH A 23 923 916 HOH HOH . 
F 5 HOH A 24 924 918 HOH HOH . 
F 5 HOH A 25 925 919 HOH HOH . 
F 5 HOH A 26 926 922 HOH HOH . 
F 5 HOH A 27 927 923 HOH HOH . 
F 5 HOH A 28 928 924 HOH HOH . 
F 5 HOH A 29 929 927 HOH HOH . 
F 5 HOH A 30 930 929 HOH HOH . 
F 5 HOH A 31 931 930 HOH HOH . 
F 5 HOH A 32 932 931 HOH HOH . 
F 5 HOH A 33 933 941 HOH HOH . 
F 5 HOH A 34 934 945 HOH HOH . 
F 5 HOH A 35 935 946 HOH HOH . 
F 5 HOH A 36 936 947 HOH HOH . 
F 5 HOH A 37 937 948 HOH HOH . 
F 5 HOH A 38 938 949 HOH HOH . 
F 5 HOH A 39 939 950 HOH HOH . 
F 5 HOH A 40 940 951 HOH HOH . 
F 5 HOH A 41 941 952 HOH HOH . 
F 5 HOH A 42 942 953 HOH HOH . 
F 5 HOH A 43 943 954 HOH HOH . 
F 5 HOH A 44 944 955 HOH HOH . 
F 5 HOH A 45 945 956 HOH HOH . 
F 5 HOH A 46 946 957 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . B 2 44.602 7.981 -81.926 1 55.45 ? FE HEB 801 A 1 
HETATM 2 C CHA HEB . . . B 2 46.609 6.779 -84.276 1 60.64 ? CHA HEB 801 A 1 
HETATM 3 C CHB HEB . . . B 2 46.049 11.089 -82.429 1 57.6 ? CHB HEB 801 A 1 
HETATM 4 C CHC HEB . . . B 2 42.655 9.247 -79.518 1 57.79 ? CHC HEB 801 A 1 
HETATM 5 C CHD HEB . . . B 2 43.219 4.928 -81.518 1 49.5 ? CHD HEB 801 A 1 
HETATM 6 N NA HEB . . . B 2 46.024 8.782 -83.101 1 57.16 ? NA HEB 801 A 1 
HETATM 7 C C1A HEB . . . B 2 46.708 8.103 -84.055 1 56.32 ? C1A HEB 801 A 1 
HETATM 8 C C2A HEB . . . B 2 47.583 8.908 -84.772 1 52.52 ? C2A HEB 801 A 1 
HETATM 9 C C3A HEB . . . B 2 47.454 10.13 -84.237 1 52.98 ? C3A HEB 801 A 1 
HETATM 10 C C4A HEB . . . B 2 46.475 10.053 -83.223 1 56.12 ? C4A HEB 801 A 1 
HETATM 11 C CMA HEB . . . B 2 48.177 11.377 -84.67 1 53.36 ? CMA HEB 801 A 1 
HETATM 12 C CAA HEB . . . B 2 48.485 8.445 -85.893 1 55.37 ? CAA HEB 801 A 1 
HETATM 13 C CBA HEB . . . B 2 47.768 8.356 -87.266 1 56.4 ? CBA HEB 801 A 1 
HETATM 14 C CGA HEB . . . B 2 48.612 7.58 -88.297 1 62.81 ? CGA HEB 801 A 1 
HETATM 15 O O1A HEB . . . B 2 49.763 7.944 -88.57 1 65.46 ? O1A HEB 801 A 1 
HETATM 16 O O2A HEB . . . B 2 48.241 6.542 -88.924 1 70.76 ? O2A HEB 801 A 1 
HETATM 17 N NB HEB . . . B 2 44.373 9.849 -81.089 1 52.3 ? NB HEB 801 A 1 
HETATM 18 C C1B HEB . . . B 2 45.069 10.928 -81.442 1 56.94 ? C1B HEB 801 A 1 
HETATM 19 C C2B HEB . . . B 2 44.667 12.012 -80.647 1 59.46 ? C2B HEB 801 A 1 
HETATM 20 C C3B HEB . . . B 2 43.695 11.553 -79.815 1 55.19 ? C3B HEB 801 A 1 
HETATM 21 C C4B HEB . . . B 2 43.547 10.111 -80.119 1 52.66 ? C4B HEB 801 A 1 
HETATM 22 C CMB HEB . . . B 2 45.195 13.431 -80.715 1 61.14 ? CMB HEB 801 A 1 
HETATM 23 C CAB HEB . . . B 2 43.107 12.404 -78.772 1 50.53 ? CAB HEB 801 A 1 
HETATM 24 C CBB HEB . . . B 2 42.652 11.89 -77.645 1 49.29 ? CBB HEB 801 A 1 
HETATM 25 N NC HEB . . . B 2 43.188 7.192 -80.677 1 53.37 ? NC HEB 801 A 1 
HETATM 26 C C1C HEB . . . B 2 42.436 7.9 -79.836 1 58.59 ? C1C HEB 801 A 1 
HETATM 27 C C2C HEB . . . B 2 41.389 7.066 -79.386 1 57.13 ? C2C HEB 801 A 1 
HETATM 28 C C3C HEB . . . B 2 41.546 5.834 -79.975 1 50.79 ? C3C HEB 801 A 1 
HETATM 29 C C4C HEB . . . B 2 42.706 5.934 -80.769 1 51.2 ? C4C HEB 801 A 1 
HETATM 30 C CMC HEB . . . B 2 40.308 7.501 -78.434 1 61.7 ? CMC HEB 801 A 1 
HETATM 31 C CAC HEB . . . B 2 40.785 4.597 -79.793 1 51.57 ? CAC HEB 801 A 1 
HETATM 32 C CBC HEB . . . B 2 39.879 4.42 -78.848 1 54.09 ? CBC HEB 801 A 1 
HETATM 33 N ND HEB . . . B 2 44.825 6.269 -82.674 1 52.57 ? ND HEB 801 A 1 
HETATM 34 C C1D HEB . . . B 2 44.227 5.128 -82.408 1 47.31 ? C1D HEB 801 A 1 
HETATM 35 C C2D HEB . . . B 2 44.751 4.035 -83.223 1 48.4 ? C2D HEB 801 A 1 
HETATM 36 C C3D HEB . . . B 2 45.694 4.571 -83.994 1 51.17 ? C3D HEB 801 A 1 
HETATM 37 C C4D HEB . . . B 2 45.72 5.962 -83.607 1 55.7 ? C4D HEB 801 A 1 
HETATM 38 C CMD HEB . . . B 2 44.301 2.6 -83.21 1 51.15 ? CMD HEB 801 A 1 
HETATM 39 C CAD HEB . . . B 2 46.656 4.037 -85.038 1 52.64 ? CAD HEB 801 A 1 
HETATM 40 C CBD HEB . . . B 2 46.289 2.795 -85.815 1 55.67 ? CBD HEB 801 A 1 
HETATM 41 C CGD HEB . . . B 2 47.305 2.655 -86.914 1 57.03 ? CGD HEB 801 A 1 
HETATM 42 O O1D HEB . . . B 2 47.181 3.386 -87.965 1 58.63 ? O1D HEB 801 A 1 
HETATM 43 O O2D HEB . . . B 2 48.239 1.809 -86.719 1 57.65 ? O2D HEB 801 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#