data_4PB1 # _model_server_result.job_id zJafdL2s16zk0YAfEeio1g _model_server_result.datetime_utc '2025-02-17 03:21:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4PB1 # _exptl.entry_id 4PB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PB1 _cell.length_a 119.749 _cell.length_b 119.749 _cell.length_c 83.638 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 59.8745 -103.705676 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 119.749 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A OD1 ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 A O VAL 158 A VAL 152 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 A OG SER 189 A SER 183 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A O ILE 190 A ILE 184 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 C NA NA . A NA 502 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C8 H12 N4 O5' _chem_comp.formula_weight 244.205 _chem_comp.id RBV _chem_comp.mon_nstd_flag . _chem_comp.name 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ribavirin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 RBV sing 332 n y N1 C5 RBV sing 333 n y N1 C1' RBV sing 334 n n N2 C3 RBV doub 335 n y C3 N4 RBV sing 336 n y C3 C6 RBV sing 337 n n N3 C6 RBV sing 338 n n O3 C6 RBV doub 339 n n N4 C5 RBV doub 340 n y C1' C2' RBV sing 341 n n C1' O4' RBV sing 342 n n C2' O2' RBV sing 343 n n C2' C3' RBV sing 344 n n C3' O3' RBV sing 345 n n C3' C4' RBV sing 346 n n C4' O4' RBV sing 347 n n C4' C5' RBV sing 348 n n C5' O5' RBV sing 349 n n N3 HN3 RBV sing 350 n n N3 HN3A RBV sing 351 n n C5 H5 RBV sing 352 n n C1' H1' RBV sing 353 n n C2' H2' RBV sing 354 n n O2' HO2' RBV sing 355 n n C3' H3' RBV sing 356 n n O3' HO3' RBV sing 357 n n C4' H4' RBV sing 358 n n C5' H5' RBV sing 359 n n C5' "H5'A" RBV sing 360 n n O5' HO5' RBV sing 361 n n # _atom_sites.entry_id 4PB1 _atom_sites.fract_transf_matrix[1][1] 0.008351 _atom_sites.fract_transf_matrix[1][2] 0.004821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBV A 1 501 1 RBV RVN . C 3 NA A 1 502 1 NA NA . D 4 DMU A 1 503 503 DMU DMU . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBV . . . B 2 51.46 -20.399 -8.112 1 54.18 ? N1 RBV 501 A 1 HETATM 2 N N2 RBV . . . B 2 50.773 -20.717 -9.286 1 54.18 ? N2 RBV 501 A 1 HETATM 3 C C3 RBV . . . B 2 49.837 -21.619 -8.908 1 54.18 ? C3 RBV 501 A 1 HETATM 4 N N3 RBV . . . B 2 48.042 -23.21 -9.264 1 54.18 ? N3 RBV 501 A 1 HETATM 5 O O3 RBV . . . B 2 48.761 -21.965 -10.971 1 54.18 ? O3 RBV 501 A 1 HETATM 6 N N4 RBV . . . B 2 49.955 -21.831 -7.574 1 54.18 ? N4 RBV 501 A 1 HETATM 7 C C5 RBV . . . B 2 50.96 -21.072 -7.078 1 54.18 ? C5 RBV 501 A 1 HETATM 8 C C6 RBV . . . B 2 48.836 -22.281 -9.793 1 54.18 ? C6 RBV 501 A 1 HETATM 9 C C1' RBV . . . B 2 52.559 -19.41 -8.243 1 54.18 ? C1' RBV 501 A 1 HETATM 10 C C2' RBV . . . B 2 51.977 -18.014 -8.392 1 54.18 ? C2' RBV 501 A 1 HETATM 11 O O2' RBV . . . B 2 52.744 -17.265 -9.335 1 54.18 ? O2' RBV 501 A 1 HETATM 12 C C3' RBV . . . B 2 52.131 -17.385 -7.026 1 54.18 ? C3' RBV 501 A 1 HETATM 13 O O3' RBV . . . B 2 52.413 -15.987 -7.132 1 54.18 ? O3' RBV 501 A 1 HETATM 14 C C4' RBV . . . B 2 53.296 -18.131 -6.402 1 54.18 ? C4' RBV 501 A 1 HETATM 15 O O4' RBV . . . B 2 53.333 -19.413 -7.038 1 54.18 ? O4' RBV 501 A 1 HETATM 16 C C5' RBV . . . B 2 53.117 -18.287 -4.9 1 54.18 ? C5' RBV 501 A 1 HETATM 17 O O5' RBV . . . B 2 51.83 -18.855 -4.636 1 54.18 ? O5' RBV 501 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #