data_4PB2
#
_model_server_result.job_id            SkF1HTUzgedPYOlJxw6Euw 
_model_server_result.datetime_utc      '2024-11-22 20:13:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pb2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4PB2 
#
_exptl.entry_id    4PB2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PB2 
_cell.length_a            119.772 
_cell.length_b            119.772 
_cell.length_c            83.214 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PB2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 59.886 -103.725595 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 119.772 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc2 A OD1 ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc3 A O VAL 158 A VAL 152 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc4 A OG SER 189 A SER 183 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc5 A O ILE 190 A ILE 184 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc6 C NA NA . A NA 502 1_555 E O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PB2 
_atom_sites.fract_transf_matrix[1][1]    0.008349 
_atom_sites.fract_transf_matrix[1][2]    0.00482 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5UD A 1 501 1 5UD FU0 . 
C 3 NA A 1 502 1 NA NA . 
D 4 DMU A 1 503 503 DMU DMU . 
E 5 HOH A 1 601 93 HOH HOH . 
E 5 HOH A 2 602 2 HOH HOH . 
E 5 HOH A 3 603 110 HOH HOH . 
E 5 HOH A 4 604 15 HOH HOH . 
E 5 HOH A 5 605 82 HOH HOH . 
E 5 HOH A 6 606 89 HOH HOH . 
E 5 HOH A 7 607 95 HOH HOH . 
E 5 HOH A 8 608 5 HOH HOH . 
E 5 HOH A 9 609 18 HOH HOH . 
E 5 HOH A 10 610 4 HOH HOH . 
E 5 HOH A 11 611 126 HOH HOH . 
E 5 HOH A 12 612 12 HOH HOH . 
E 5 HOH A 13 613 100 HOH HOH . 
E 5 HOH A 14 614 1 HOH HOH . 
E 5 HOH A 15 615 3 HOH HOH . 
E 5 HOH A 16 616 6 HOH HOH . 
E 5 HOH A 17 617 7 HOH HOH . 
E 5 HOH A 18 618 8 HOH HOH . 
E 5 HOH A 19 619 9 HOH HOH . 
E 5 HOH A 20 620 10 HOH HOH . 
E 5 HOH A 21 621 14 HOH HOH . 
E 5 HOH A 22 622 22 HOH HOH . 
E 5 HOH A 23 623 23 HOH HOH . 
E 5 HOH A 24 624 24 HOH HOH . 
E 5 HOH A 25 625 25 HOH HOH . 
E 5 HOH A 26 626 26 HOH HOH . 
E 5 HOH A 27 627 27 HOH HOH . 
E 5 HOH A 28 628 31 HOH HOH . 
E 5 HOH A 29 629 33 HOH HOH . 
E 5 HOH A 30 630 35 HOH HOH . 
E 5 HOH A 31 631 42 HOH HOH . 
E 5 HOH A 32 632 45 HOH HOH . 
E 5 HOH A 33 633 46 HOH HOH . 
E 5 HOH A 34 634 47 HOH HOH . 
E 5 HOH A 35 635 49 HOH HOH . 
E 5 HOH A 36 636 54 HOH HOH . 
E 5 HOH A 37 637 56 HOH HOH . 
E 5 HOH A 38 638 59 HOH HOH . 
E 5 HOH A 39 639 61 HOH HOH . 
E 5 HOH A 40 640 62 HOH HOH . 
E 5 HOH A 41 641 65 HOH HOH . 
E 5 HOH A 42 642 66 HOH HOH . 
E 5 HOH A 43 643 69 HOH HOH . 
E 5 HOH A 44 644 72 HOH HOH . 
E 5 HOH A 45 645 73 HOH HOH . 
E 5 HOH A 46 646 75 HOH HOH . 
E 5 HOH A 47 647 78 HOH HOH . 
E 5 HOH A 48 648 79 HOH HOH . 
E 5 HOH A 49 649 84 HOH HOH . 
E 5 HOH A 50 650 87 HOH HOH . 
E 5 HOH A 51 651 88 HOH HOH . 
E 5 HOH A 52 652 90 HOH HOH . 
E 5 HOH A 53 653 92 HOH HOH . 
E 5 HOH A 54 654 111 HOH HOH . 
E 5 HOH A 55 655 114 HOH HOH . 
E 5 HOH A 56 656 120 HOH HOH . 
E 5 HOH A 57 657 137 HOH HOH . 
E 5 HOH A 58 658 144 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               42.996 
_atom_site.Cartn_y               -17.898 
_atom_site.Cartn_z               -9.379 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#