data_4PC7 # _model_server_result.job_id 5tvpKITpJz1afg33IHyb8g _model_server_result.datetime_utc '2024-11-22 23:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4PC7 # _exptl.entry_id 4PC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 839.019 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E,14E,16Z,18S,19Z)-10,18-DIHYDROXY-12,16,19-TRIMETHYL-11,22-DIOXOOX ACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN-2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA-3,5,7-TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL-BETA-L-GALACTOPYRANOSIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PC7 _cell.length_a 122.82 _cell.length_b 122.82 _cell.length_c 173.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 26 A THR 25 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A OD2 ASP 81 A ASP 80 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc3 C O1G GNP . A GNP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 C O2G GNP . A GNP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc5 C O1B GNP . A GNP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc6 E MG MG . A MG 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? # _chem_comp.formula 'C47 H66 O13' _chem_comp.formula_weight 839.019 _chem_comp.id PUL _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E,14E,16Z,18S,19Z)-10,18-DIHYDROXY-12,16,19-TRIMETHYL-11,22-DIOXOOX ACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN-2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA-3,5,7-TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL-BETA-L-GALACTOPYRANOSIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PULVOMYCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 PUL sing 328 n n C12 C11 PUL sing 329 n n C12 O12 PUL doub 330 n n C13 C14 PUL sing 331 n n C13 O13 PUL sing 332 n n C13 H13 PUL sing 333 n n C14 C15 PUL doub 334 e n C14 H14 PUL sing 335 n n C15 C16 PUL sing 336 n n C15 H15 PUL sing 337 n n C16 C17 PUL doub 338 e n C16 H16 PUL sing 339 n n C17 C18 PUL sing 340 n n C17 H17 PUL sing 341 n n C18 C19 PUL doub 342 e n C18 H18 PUL sing 343 n n C19 C20 PUL sing 344 n n C19 H19 PUL sing 345 n n C20 C21 PUL sing 346 n n C20 H201 PUL sing 347 n n C20 H202 PUL sing 348 n n C11 C10 PUL doub 349 e n C11 C43 PUL sing 350 n n C10 C9 PUL sing 351 n n C10 H10 PUL sing 352 n n C9 C8 PUL doub 353 e n C9 H9 PUL sing 354 n n C8 C7 PUL sing 355 n n C8 H8 PUL sing 356 n n C7 C6 PUL doub 357 e n C7 C42 PUL sing 358 n n C6 C5 PUL sing 359 n n C6 H6 PUL sing 360 n n C5 C4 PUL sing 361 n n C5 O5 PUL sing 362 n n C5 H5 PUL sing 363 n n C4 C41 PUL sing 364 n n C4 C3 PUL doub 365 e n C21 O21 PUL sing 366 n n C21 C22 PUL sing 367 n n C21 H21 PUL sing 368 n n O21 C1 PUL sing 369 n n C43 H431 PUL sing 370 n n C43 H432 PUL sing 371 n n C43 H433 PUL sing 372 n n C42 H421 PUL sing 373 n n C42 H422 PUL sing 374 n n C42 H423 PUL sing 375 n n C41 H411 PUL sing 376 n n C41 H412 PUL sing 377 n n C41 H413 PUL sing 378 n n C3 C2 PUL sing 379 n n C3 H3 PUL sing 380 n n C2 C1 PUL sing 381 n n C2 H2C1 PUL sing 382 n n C2 H2C2 PUL sing 383 n n C1 O1 PUL doub 384 n n O5 HB PUL sing 385 n n O13 HA PUL sing 386 n n C22 C23 PUL sing 387 n n C22 C44 PUL sing 388 n n C22 H22 PUL sing 389 n n C23 C24 PUL sing 390 n n C23 O23 PUL sing 391 n n C23 H23 PUL sing 392 n n C24 C25 PUL sing 393 n n C24 C45 PUL sing 394 n n C24 H24 PUL sing 395 n n C25 C26 PUL sing 396 n n C25 O25 PUL doub 397 n n C26 C27 PUL doub 398 e n C26 H26 PUL sing 399 n n C27 C28 PUL sing 400 n n C27 H27 PUL sing 401 n n C28 C29 PUL doub 402 e n C28 H28 PUL sing 403 n n C29 C30 PUL sing 404 n n C29 H29 PUL sing 405 n n C30 C31 PUL doub 406 e n C30 H30 PUL sing 407 n n C31 C32 PUL sing 408 n n C31 H31 PUL sing 409 n n C44 H441 PUL sing 410 n n C44 H442 PUL sing 411 n n C44 H443 PUL sing 412 n n O23 HD PUL sing 413 n n C32 O32 PUL sing 414 n n C32 C33 PUL sing 415 n n C32 H32 PUL sing 416 n n O32 HE PUL sing 417 n n C33 O33 PUL sing 418 n n C33 C34 PUL sing 419 n n C33 H33 PUL sing 420 n n O33 C35 PUL sing 421 n n C35 O35 PUL sing 422 n n C35 C36 PUL sing 423 n n C35 H35 PUL sing 424 n n C45 H451 PUL sing 425 n n C45 H452 PUL sing 426 n n C45 H453 PUL sing 427 n n O35 C39 PUL sing 428 n n C39 C38 PUL sing 429 n n C39 C40 PUL sing 430 n n C39 H39 PUL sing 431 n n C38 C37 PUL sing 432 n n C38 O38 PUL sing 433 n n C38 H38 PUL sing 434 n n C37 C36 PUL sing 435 n n C37 O37 PUL sing 436 n n C37 H37 PUL sing 437 n n C36 O36 PUL sing 438 n n C36 H36 PUL sing 439 n n C46 O36 PUL sing 440 n n C46 H461 PUL sing 441 n n C46 H462 PUL sing 442 n n C46 H463 PUL sing 443 n n O37 HF PUL sing 444 n n O38 C47 PUL sing 445 n n C47 H471 PUL sing 446 n n C47 H472 PUL sing 447 n n C47 H473 PUL sing 448 n n C40 H401 PUL sing 449 n n C40 H402 PUL sing 450 n n C40 H403 PUL sing 451 n n C34 H341 PUL sing 452 n n C34 H342 PUL sing 453 n n C34 H343 PUL sing 454 n n # _atom_sites.entry_id 4PC7 _atom_sites.fract_transf_matrix[1][1] 0.008142 _atom_sites.fract_transf_matrix[1][2] 0.004701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 401 394 GNP GNP . D 4 PUL A 1 402 1 PUL PUL . E 5 MG A 1 403 1 MG MG . F 6 HOH A 1 501 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 PUL . . . D 4 -9.414 86.383 51.529 1 142.93 ? C12 PUL 402 A 1 HETATM 2 C C13 PUL . . . D 4 -9.542 86.389 50.026 1 143.55 ? C13 PUL 402 A 1 HETATM 3 C C14 PUL . . . D 4 -10.86 85.84 49.557 1 141.24 ? C14 PUL 402 A 1 HETATM 4 C C15 PUL . . . D 4 -11.736 86.528 48.808 1 141.47 ? C15 PUL 402 A 1 HETATM 5 C C16 PUL . . . D 4 -13.013 85.931 48.386 1 140.69 ? C16 PUL 402 A 1 HETATM 6 C C17 PUL . . . D 4 -14.139 86.625 48.155 1 140.23 ? C17 PUL 402 A 1 HETATM 7 C C18 PUL . . . D 4 -15.393 85.979 47.736 1 138.99 ? C18 PUL 402 A 1 HETATM 8 C C19 PUL . . . D 4 -16.431 86.706 47.294 1 138.73 ? C19 PUL 402 A 1 HETATM 9 C C20 PUL . . . D 4 -17.75 86.142 46.846 1 138.47 ? C20 PUL 402 A 1 HETATM 10 C C11 PUL . . . D 4 -10.435 87.044 52.418 1 141.8 ? C11 PUL 402 A 1 HETATM 11 C C10 PUL . . . D 4 -11.315 87.947 51.961 1 142.6 ? C10 PUL 402 A 1 HETATM 12 C C9 PUL . . . D 4 -12.362 88.658 52.71 1 140.69 ? C9 PUL 402 A 1 HETATM 13 C C8 PUL . . . D 4 -13.643 88.395 52.419 1 140.52 ? C8 PUL 402 A 1 HETATM 14 C C7 PUL . . . D 4 -14.768 89.081 53.134 1 140.01 ? C7 PUL 402 A 1 HETATM 15 C C6 PUL . . . D 4 -15.705 89.727 52.429 1 140.49 ? C6 PUL 402 A 1 HETATM 16 C C5 PUL . . . D 4 -16.889 90.446 53.001 1 139.76 ? C5 PUL 402 A 1 HETATM 17 C C4 PUL . . . D 4 -18.137 89.849 52.413 1 138.57 ? C4 PUL 402 A 1 HETATM 18 O O12 PUL . . . D 4 -8.47 85.837 52.037 1 144.85 ? O12 PUL 402 A 1 HETATM 19 C C21 PUL . . . D 4 -18.89 87.16 47.051 1 138.74 ? C21 PUL 402 A 1 HETATM 20 O O21 PUL . . . D 4 -19.184 87.303 48.436 1 137.78 ? O21 PUL 402 A 1 HETATM 21 C C43 PUL . . . D 4 -10.411 86.655 53.866 1 142.61 ? C43 PUL 402 A 1 HETATM 22 C C42 PUL . . . D 4 -14.846 89.046 54.629 1 139.33 ? C42 PUL 402 A 1 HETATM 23 C C41 PUL . . . D 4 -19.42 89.868 53.19 1 138.58 ? C41 PUL 402 A 1 HETATM 24 C C3 PUL . . . D 4 -18.1 89.294 51.19 1 139.48 ? C3 PUL 402 A 1 HETATM 25 C C2 PUL . . . D 4 -19.256 88.654 50.475 1 138.27 ? C2 PUL 402 A 1 HETATM 26 C C1 PUL . . . D 4 -18.986 88.595 48.998 1 139.41 ? C1 PUL 402 A 1 HETATM 27 O O1 PUL . . . D 4 -18.643 89.547 48.356 1 141.33 ? O1 PUL 402 A 1 HETATM 28 O O5 PUL . . . D 4 -16.81 91.828 52.688 1 141.17 ? O5 PUL 402 A 1 HETATM 29 O O13 PUL . . . D 4 -8.498 85.608 49.459 1 144.98 ? O13 PUL 402 A 1 HETATM 30 C C22 PUL . . . D 4 -20.197 86.845 46.295 1 138.18 ? C22 PUL 402 A 1 HETATM 31 C C23 PUL . . . D 4 -19.897 86.28 44.893 1 138.44 ? C23 PUL 402 A 1 HETATM 32 C C24 PUL . . . D 4 -21.189 85.669 44.316 1 138.5 ? C24 PUL 402 A 1 HETATM 33 C C25 PUL . . . D 4 -21.013 85.315 42.867 1 139.18 ? C25 PUL 402 A 1 HETATM 34 C C26 PUL . . . D 4 -22.128 85.59 41.902 1 139.87 ? C26 PUL 402 A 1 HETATM 35 C C27 PUL . . . D 4 -22.044 85.237 40.61 1 140.87 ? C27 PUL 402 A 1 HETATM 36 C C28 PUL . . . D 4 -23.18 85.543 39.728 1 141.96 ? C28 PUL 402 A 1 HETATM 37 C C29 PUL . . . D 4 -23.224 85.129 38.455 1 142.27 ? C29 PUL 402 A 1 HETATM 38 C C30 PUL . . . D 4 -24.345 85.418 37.55 1 143.79 ? C30 PUL 402 A 1 HETATM 39 C C31 PUL . . . D 4 -24.51 84.73 36.411 1 144.53 ? C31 PUL 402 A 1 HETATM 40 C C44 PUL . . . D 4 -21.06 88.111 46.152 1 140.41 ? C44 PUL 402 A 1 HETATM 41 O O23 PUL . . . D 4 -19.462 87.306 44.066 1 140.68 ? O23 PUL 402 A 1 HETATM 42 O O25 PUL . . . D 4 -19.993 84.814 42.483 1 139.77 ? O25 PUL 402 A 1 HETATM 43 C C32 PUL . . . D 4 -25.637 84.977 35.451 1 146.65 ? C32 PUL 402 A 1 HETATM 44 O O32 PUL . . . D 4 -26.514 83.886 35.471 1 145.27 ? O32 PUL 402 A 1 HETATM 45 C C33 PUL . . . D 4 -25.09 85.176 34.024 1 147.15 ? C33 PUL 402 A 1 HETATM 46 O O33 PUL . . . D 4 -24.36 84.026 33.614 1 146.21 ? O33 PUL 402 A 1 HETATM 47 C C35 PUL . . . D 4 -23.059 84.311 33.115 1 148.15 ? C35 PUL 402 A 1 HETATM 48 C C45 PUL . . . D 4 -21.54 84.397 45.107 1 137.31 ? C45 PUL 402 A 1 HETATM 49 O O35 PUL . . . D 4 -23.18 85.02 31.89 1 149.91 ? O35 PUL 402 A 1 HETATM 50 C C39 PUL . . . D 4 -21.907 85.381 31.373 1 152.7 ? C39 PUL 402 A 1 HETATM 51 C C38 PUL . . . D 4 -21.048 84.148 30.998 1 153.78 ? C38 PUL 402 A 1 HETATM 52 C C37 PUL . . . D 4 -20.977 83.102 32.146 1 152.48 ? C37 PUL 402 A 1 HETATM 53 C C36 PUL . . . D 4 -22.284 83.007 32.975 1 149.41 ? C36 PUL 402 A 1 HETATM 54 C C46 PUL . . . D 4 -22.333 81.179 34.55 1 148.53 ? C46 PUL 402 A 1 HETATM 55 O O36 PUL . . . D 4 -21.943 82.542 34.293 1 149.1 ? O36 PUL 402 A 1 HETATM 56 O O37 PUL . . . D 4 -20.664 81.801 31.604 1 152.4 ? O37 PUL 402 A 1 HETATM 57 O O38 PUL . . . D 4 -21.409 83.568 29.733 1 155.83 ? O38 PUL 402 A 1 HETATM 58 C C47 PUL . . . D 4 -22.695 82.982 29.54 1 155.68 ? C47 PUL 402 A 1 HETATM 59 C C40 PUL . . . D 4 -22.056 86.349 30.18 1 154.52 ? C40 PUL 402 A 1 HETATM 60 C C34 PUL . . . D 4 -26.194 85.483 32.993 1 148.21 ? C34 PUL 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 60 #